FC871916

Overview
NameFC871916
Unique NameFC871916
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12086 contig Csv1_Contig12086:26..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC871916 vs. ExPASy Swiss-Prot
Match: RL23_METKA (50S ribosomal protein L23P OS=Methanopyrus kandleri GN=rpl23p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.508e-11
Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 2 
Query:  242 DHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 496
            D + +L YP+ TE AM+ +E  N L F                 ++D++ +KVNTLI P G KKAYV+L P+  A DVA  +GI+
Sbjct:   11 DPHDVLLYPVATEKAMRLMEAENKLTFIVRRDANKPLIKKAVEELFDVEVEKVNTLITPTGEKKAYVKLKPEYRAEDVAVDLGIL 95
The following BLAST results are available for this feature:
BLAST of FC871916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RL23_METKA9.508e-1140.0050S ribosomal protein L23P OS=Methanopyrus kandler... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3CF03FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3CF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871916 ID=FC871916; Name=FC871916; organism=Citrus sinensis; type=EST; length=646bp
TGCCCACTTACACGTAAGTTCTCATCATCGCCGGCGAACAATGGCTCCTC
CAAAAGGTGAGACAAAAAAGGCTGATCCAAAGGTTCAGGCCTTGAAGACT
GCGAAAGCAGTGAAGTCTGGCCGTACCTTTAAGAAGGCCAAGAAGATCCG
GACTTCAGTTACATTTCACCGTCCAAAGACATTGAAGAAGGACCGGAATC
CCAAGTACCCTCGCATCAGTGCTCCACCTAGGAACAAGCTTGACCATTAT
CAGATTCTCAAGTACCCACTCACCACTGAATCAGCAATGAAGAAAATTGA
AGACAACAATACTCTGGTTTTCATTGTTGACATACGGGCTGATAAGAAAA
AGATAAAGGATGCAGTTAAGAAGATGTATGATATCCAGGCTAAGAAAGTG
AATACCTTGATCAGGCCCGATGGCACAAAGAAGGCGTATGTCAGGTTGAC
ACCAGACTCTGATGCTTTGGACGTAGCAAACAAGATTGGAATCATTTAAA
CAATTGATCTTTCATTCACATTTTTGTGTATTTTTTAATCCAAAAAGTTA
GTTATGTTAAGACCTCAAACAAAGATTTGCAAATTTGTTCCTGTTAACAT
TTGTTACTGCTGATTAATATTTTCCTAAAAAAAAAAAAAAAAAAAA
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