CV998074

Overview
NameCV998074
Unique NameCV998074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length939
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:195..1133. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV998074 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 1.415e-76
Identity = 130/242 (53.72%), Postives = 172/242 (71.07%), Query Frame = -2
Query:  207 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGY-VGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 929
            +G II+R MFE +L +R D  C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF QT HETTGGW  AP G +AWGYC + +++P+                YYGRGPIQLT   NY   G+ALG+DL+NNPDL+++DPV++F++AIWFWMTAQ PKPSCH+VI ++W PS +D ++GRLPGYG+ TNIINGG ECG     D  ++R+G++  +C  F +  GDN+ C +Q+PYG
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSDPP-------------YYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIACRDQKPYG 254          
BLAST of CV998074 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 4.118e-76
Identity = 132/241 (54.77%), Postives = 170/241 (70.54%), Query Frame = -2
Query:  210 GKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGV--DLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 926
            G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FPGFG +G++T RK+EIAAFF QT HET GG      G +  GYC++RQ+  +               +YYGRGPIQLT   NY R G+ +GV  DL+NNPDL+ATDP++SF++AIWFWMTAQ  KPSCH VII +W PS  D  A R+PGYG+ TNIINGG+EC    N AV +RIGF+  +CG   +  G+NLDC+NQ+ +
Sbjct:   28 GSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD--------------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of CV998074 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 3.486e-75
Identity = 133/241 (55.19%), Postives = 168/241 (69.71%), Query Frame = -2
Query:  207 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 929
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FPGFG +G++T R++EIAAFF QT HETTGG   A    +  GYC++RQ   +               +YYGRGPIQLT   NY + G A+G +L+NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA D  A R+PGYG+ TNIINGGIECG   NDAV +RIG++  +CG   + PG+NLDC NQR +G
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD--------------RYYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          
BLAST of CV998074 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 3.486e-75
Identity = 134/241 (55.60%), Postives = 170/241 (70.54%), Query Frame = -2
Query:  210 ELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 932
            ++G I++ ++F ++L  RND RCPA+GFYTYDAFI AA +FPGFG +G++T RK+EIAAFF QT HETTGG   A G  +A GYC++R+ +   S              +YGRGPIQLT   NY   G+A+G DL+NNPDL+ATD  +SFK+AIWFWMTAQ  KPSCH+VI  +W PSA D +A R PGYG+ TNIINGGIECG   N  V +RIGF+  +C    + PGDNLDC +QR +
Sbjct:   18 DVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSADG-PFAGGYCFVREGNQMGSG-------------FYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNF 244          
BLAST of CV998074 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 5.947e-75
Identity = 131/248 (52.82%), Postives = 167/248 (67.34%), Query Frame = -2
Query:  207 GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNET-MRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXP---LPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 938
            G  +  I+SR +F+ +L +RNDA CPA  FYTYDAF+ AA AFPGF  +G +    KRE+AAF AQT HETTGGW  AP G YAWGYC+  +   A+                 +YYGRGPIQL++N NY   G+A+G DLL +PDL+A+D  +SF +A WFWMT Q PKPSCH V   +W PSA+D  AGR+PGYG+ TNIINGG+ECG+  +D V +RIGF+  +C   G+    NLDC +QRP+G
Sbjct:   78 GSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNYGPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDCYSQRPFG 325          
BLAST of CV998074 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.730e-74
Identity = 129/241 (53.53%), Postives = 167/241 (69.29%), Query Frame = -2
Query:  210 GKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGV--DLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 926
            G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FPGFG +G++T RK+EIAAFF QT HET GG      G +  GYC+++Q+  +               +YYGRGPIQLT   NY R G+ +GV  +L+NNPDL+ATDP++SFK+AIWFWMT Q  KPSCH VII +W PS  D  A R+PGYG+ TNIING  ECG   N A  +RIGF+  +CG   +  G+NLDC+NQ+ +
Sbjct:   28 GSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD--------------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of CV998074 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 3.263e-73
Identity = 132/240 (55.00%), Postives = 164/240 (68.33%), Query Frame = -2
Query:  210 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 929
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FPGFG SG++T R++EIAAFF QT HETTGG   A    +  GYC++RQ   +               +YYGRGPIQLT   NY + G A+  DL+NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA D +A R PG G+ TNIINGGIECG   N AV +RIG++  +CG   + PGDNLDC NQR +
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD--------------RYYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQRNF 250          
BLAST of CV998074 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.240e-72
Identity = 131/241 (54.36%), Postives = 167/241 (69.29%), Query Frame = -2
Query:  210 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNET-MRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 929
            +G +I++ +F  +LP R++++CPARGFYTYDAFI AA +FP FG SG    + +RE+AAFF QT HETTGG T     ++ WGYC+  +++ A+S              YYGRGPIQLT   NY   G ALG+DL+ NPDL++TD V+SFK+AIWFWMTAQ  KPSCH+VI+  W PSA D  AGR+PGYG+ TNIINGGIECG   NDA  +RIG++  +C   G   G NLDC NQR +
Sbjct:   32 VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGG-TRGSSDQFQWGYCFKEEINKATSPP------------YYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDCYNQRNF 259          
BLAST of CV998074 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.790e-71
Identity = 132/240 (55.00%), Postives = 165/240 (68.75%), Query Frame = -2
Query:  210 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 929
            +G I++ ++F+ +L  RNDARC A  FYTYDAFI AA +FPGFG +G++T RK+EIAAFF QT HETTGG T +P G YA GYC++R+ +   +              YYGRGPIQLT   NY   G+A+  DL+NNPDL+ATD  +SFK+AIWFWMT Q  KPSCH+VI   W PSA D +A R+PGYG+ TNIINGGIECG   N  V +RIG++        + PGDNLDC NQR +
Sbjct:   26 VGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGG-TLSPDGPYAGGYCFLREGNQMGNG-------------YYGRGPIQLTGQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYNQRNF 251          
BLAST of CV998074 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 264.233 bits (674), Expect = 7.522e-70
Identity = 128/248 (51.61%), Postives = 155/248 (62.50%), Query Frame = -2
Query:  195 GELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLM 935
            G L  II   MF+D+L YRND +CPA GFYTY+AFI AA+ FP FGN+G++ MRKREIAAF  QT HET G W  A G +Y WGYC++                                 N NY  CG+ L + LL  P+L+ TDP ++FK+A+WFWMT Q PKPSCH VI + W PSA D  AGR+PGYG+ TNIINGGIECG  G N+A  NRIGF+ T+C   G   G NLDC  QRP+G  L+
Sbjct:   83 GYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM---------------------------------NYNYGLCGDDLNLPLLQEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
The following BLAST results are available for this feature:
BLAST of CV998074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI11_ORYSJ1.415e-7653.72Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLCI4.118e-7654.77Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIQ_TOBAC3.486e-7555.19Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIB_SOLLC3.486e-7555.60Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI12_ORYSJ5.947e-7552.82Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLLC1.730e-7453.53Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIP_TOBAC3.263e-7355.00Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI8_ORYSJ1.240e-7254.36Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_PETHY1.790e-7155.00Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIB_POPTR7.522e-7051.61Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_CTMN-3_T7 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC33_A05_047, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998074 ID=CV998074; Name=CV998074; organism=Citrus sinensis; type=EST; length=939bp
TTTTTTTTTTTTTTTTTGGAGAGACTCATTGATCCATGTTGGATCAGTCT
TATTTAATTTACTTACAATAAGAGCGTAACAAACTAACAATTTAGTTGTC
CACCTACAAGTGTGACATCTAAAGTTTTTATTAAGTAGCTTTTATTAAGC
TTATTTTACTAAAACGTTGATCATGATGATCACATAGATTGTGCCATCAG
ATTAAGGCCATAAGGCCGTTGGTTGGAGCAATCAAGATTGTCACCAGGCT
GAATCCCAAACTTGCCACAGAAAGTGGTAAAGAACCCAATACGGTTACGT
ACAGCGTCATTCCCAACGTAGCCACATTCAATTCCACCGTTGATTATATT
TGTGGTTAGACCGTATCCCGGAAGCCGGCCGGCGTTTACGTCATTTGCTG
ATGGTTTCCATTCGTCGATAATGACTTCGTGGCACGATGGCTTTGGTGGC
TGTGCAGTCATCCAGAACCAGATTGCTGACTTGAATGATAGTACTGGATC
AGTGGCAAGTAGGTCTGGATTGTTCAACAAGTCCACCCCCAAGGCTTCTC
CGCACCTTAAGTAATTGCAATTCCAAGTGAGTTGAATTGGACCTCGGCCA
TAGTATTGCCCTGGCAAGGGACATGGACAGTAAGGATAACAGTAGTCGGA
CGACGCAGGGCTAACTTGCCTAATATAGCAATATCCCCAAGCATATTCTC
CACCAGGTGCATCGGTCCATCCCCCAGTAGTTTCATGGCCAGTTTGGGCA
AAAAAGGCAGCAATTTCTCTTTTACGCATGGTTTCATTTCCAGAGTTACC
AAAGCCTGGAAAAGCTTGGGCTGCCTCTATAAAAGCATCATAAGTGTAGA
AGCCTCTGGCAGGGCATCGGGCATCATTTCTATACGGAAGCAAGTCTTCA
AACATCTCCCTTGAGATGATCTTGCCCAGTTCACCGCCA
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