EL492528

Overview
NameEL492528
Unique NameEL492528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492528 vs. ExPASy Swiss-Prot
Match: RL10_SULTO (50S ribosomal protein L10e OS=Sulfolobus tokodaii GN=rpl10e PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.795e-16
Identity = 50/122 (40.98%), Postives = 72/122 (59.02%), Query Frame = 2
Query:   14 FPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKI 373
            + + + LV+ EK  +   ALEAAR+   K +    G D  F L V  +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+  +G +++  + K  +   A++A   A  K P + KI
Sbjct:   43 YDYELRLVALEKGQIRHNALEAARVLALKQLTNKTGSDQNFALIVLKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARIERLGDIIMIAKVKKEHLEIAKKAFEAAASKIPLKTKI 164          
BLAST of EL492528 vs. ExPASy Swiss-Prot
Match: RL10_SULIY (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.795e-16
Identity = 50/123 (40.65%), Postives = 75/123 (60.98%), Query Frame = 2
Query:   11 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKI 373
            ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:   42 DYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of EL492528 vs. ExPASy Swiss-Prot
Match: RL10_SULIN (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.795e-16
Identity = 50/123 (40.65%), Postives = 75/123 (60.98%), Query Frame = 2
Query:   11 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKI 373
            ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:   42 DYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of EL492528 vs. ExPASy Swiss-Prot
Match: RL10_SULIM (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.795e-16
Identity = 50/123 (40.65%), Postives = 75/123 (60.98%), Query Frame = 2
Query:   11 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKI 373
            ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:   42 DYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of EL492528 vs. ExPASy Swiss-Prot
Match: RL10_SULIL (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.795e-16
Identity = 50/123 (40.65%), Postives = 75/123 (60.98%), Query Frame = 2
Query:   11 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKI 373
            ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:   42 DYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of EL492528 vs. ExPASy Swiss-Prot
Match: RL10_SULIK (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.795e-16
Identity = 50/123 (40.65%), Postives = 75/123 (60.98%), Query Frame = 2
Query:   11 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKI 373
            ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:   42 DYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of EL492528 vs. ExPASy Swiss-Prot
Match: RL10_SULIA (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.16.27) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.795e-16
Identity = 50/123 (40.65%), Postives = 75/123 (60.98%), Query Frame = 2
Query:   11 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKI 373
            ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:   42 DYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of EL492528 vs. ExPASy Swiss-Prot
Match: RL10_SULSO (50S ribosomal protein L10e OS=Sulfolobus solfataricus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.767e-16
Identity = 49/123 (39.84%), Postives = 75/123 (60.98%), Query Frame = 2
Query:   11 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKI 373
            ++ + V L++ E   +   ALEA R    K ++K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G+ L+ ++ K  +   A+EAL+ A  K P R +I
Sbjct:   42 DYDYEVRLITTEIGQIRHNALEAVRTLTLKTLSKKTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGETLIVIKVKKEHLEFAKEALKIASKKLPLRTRI 164          
BLAST of EL492528 vs. ExPASy Swiss-Prot
Match: RL10_HALWD (50S ribosomal protein L10e OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.812e-15
Identity = 48/135 (35.56%), Postives = 78/135 (57.78%), Query Frame = 2
Query:    2 GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRA--KFKFPGR------QKIIVS 382
            G  ++P  + L   E+  +   +LE+AR++ N+ M K  G+D + + +R  P  +LR NK  + AGADR+  GMR AFGKP GT AR+   + + ++ C+  ++  A++ LRRA  K   P R      QK+++S
Sbjct:   42 GPQDYPVQISLRIEEECQIRHGSLESARLSANRTMLKQVGQDNYKMVLRKFPHQILRENKQATGAGADRVSDGMRQAFGKPVGTAARIQQNERVFTIYCEVDDASVAKDGLRRAYNKMSPPCRIDVEKGQKLLIS 176          
BLAST of EL492528 vs. ExPASy Swiss-Prot
Match: RL10_HALLT (50S ribosomal protein L10e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.534e-14
Identity = 43/126 (34.13%), Postives = 70/126 (55.56%), Query Frame = 2
Query:    8 DEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR 385
            D++P  + L   E+  +   +LE++R++ N+++ K  G+  + + +R  P  V+R NK  + AGADR+  GMR AFGKP GT AR+    ++ +  C    +   +EA RRA  K     +I V R
Sbjct:   44 DDYPVQISLRVEEELQIRHGSLESSRLSANRHLIKELGEGNYKMTLRKFPHQVIRENKQATGAGADRVSDGMRQAFGKPVGTAARLNKDDIVFTAYCDVEQASVVKEAFRRAYNKLSPPCRITVDR 169          
The following BLAST results are available for this feature:
BLAST of EL492528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL10_SULTO2.795e-1640.9850S ribosomal protein L10e OS=Sulfolobus tokodaii ... [more]
RL10_SULIY2.795e-1640.6550S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIN2.795e-1640.6550S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIM2.795e-1640.6550S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIL2.795e-1640.6550S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIK2.795e-1640.6550S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIA2.795e-1640.6550S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULSO4.767e-1639.8450S ribosomal protein L10e OS=Sulfolobus solfatari... [more]
RL10_HALWD1.812e-1535.5650S ribosomal protein L10e OS=Haloquadratum walsby... [more]
RL10_HALLT1.534e-1434.1350S ribosomal protein L10e OS=Halorubrum lacusprof... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC2430 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2430, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492528 ID=EL492528; Name=EL492528; organism=Citrus sinensis; type=EST; length=469bp
AGGGGTTGATGAATTCCCTTTCTGTGTGCACTTGGTGTCTTGGGAAAAGG
AGAACGTATCTAGTGAAGCTCTTGAGGCTGCTCGAATTGCTTGCAACAAA
TATATGGCCAAGTTTGCCGGGAAAGATGCTTTCCATTTGCGAGTCCGTGT
TCACCCATTCCATGTCTTGCGTATCAACAAAATGCTTTCATGTGCTGGAG
CTGATAGGCTTCAAACTGGTATGAGGGGTGCTTTCGGTAAACCACAGGGC
ACTTGTGCTAGAGTTGCCATTGGACAGGTCCTCCTGTCAGTTCGCTGCAA
GGATAGCAATAGTCTTCATGCTCAAGAGGCTCTTCGTCGTGCAAAGTTCA
AGTTTCCTGGTCGCCAAAAAATCATTGTCAGCAGAAAGTGGGGTTTCACC
AAGTTTAGCCGCAGTGATTATTTGAGGTTCAAGTCAGAGAACCGTATTGT
GCCCGATGGTGTTACTAGA
back to top