CV887377

Overview
NameCV887377
Unique NameCV887377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887377 vs. ExPASy Swiss-Prot
Match: IF1A_SULIA (Translation initiation factor 1A OS=Sulfolobus islandicus (strain M.16.27) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.691e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = -2
Query:  402 RELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 641
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of CV887377 vs. ExPASy Swiss-Prot
Match: IF1A_METKA (Translation initiation factor 1A OS=Methanopyrus kandleri GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.691e-12
Identity = 34/92 (36.96%), Postives = 56/92 (60.87%), Query Frame = -2
Query:  378 DDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE 653
            D+  +++   ++G+ +  V +MLGN R +  C+DG  R+  I GKM K+VWI  GD++LV   ++Q ++ADV  +Y   +   LK  G+L E
Sbjct:    7 DETLKKIRLPKEGEIFGVVEKMLGNDRVQVRCVDGKTRVARIPGKMRKRVWIREGDVVLVKPWEFQPERADVTWRYTRVQVDWLKRKGKLDE 98          
BLAST of CV887377 vs. ExPASy Swiss-Prot
Match: IF1A_SULSO (Translation initiation factor 1A OS=Sulfolobus solfataricus GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.515e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = -2
Query:  402 RELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 641
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPRPEEGQTICVVKKMLGGDHLIVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of CV887377 vs. ExPASy Swiss-Prot
Match: IF1A_HALS3 (Translation initiation factor 1A OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.515e-12
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = -2
Query:  384 KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGEL 644
            ++ L   ED + +A+V  MLG  R +  C DG +R   I G+M K++WI   DI+LV   D+QDDKADV  +Y   +A  L+  G +
Sbjct:    8 RKNLRMPEDDEVFAEVTDMLGANRVQVRCADGEERTARIPGRMQKRIWIREDDIVLVEPWDWQDDKADVTWRYEKSDADQLREEGHI 94          
BLAST of CV887377 vs. ExPASy Swiss-Prot
Match: IF1A1_HALSA (Translation initiation factor 1A 1 OS=Halobacterium salinarium GN=eIF1A1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.515e-12
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = -2
Query:  384 KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGEL 644
            ++ L   ED + +A+V  MLG  R +  C DG +R   I G+M K++WI   DI+LV   D+QDDKADV  +Y   +A  L+  G +
Sbjct:    8 RKNLRMPEDDEVFAEVTDMLGANRVQVRCADGEERTARIPGRMQKRIWIREDDIVLVEPWDWQDDKADVTWRYEKSDADQLREEGHI 94          
BLAST of CV887377 vs. ExPASy Swiss-Prot
Match: IF1A_PICTO (Translation initiation factor 1A OS=Picrophilus torridus GN=eif1a PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.744e-11
Identity = 34/83 (40.96%), Postives = 48/83 (57.83%), Query Frame = -2
Query:  378 KEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE 626
            K+ G+ Y  V +M G  R   MC DG  R C I GKM K++WI  GD+++V   ++QD+K D+I +Y   +A  L     LPE
Sbjct:   17 KKSGEIYGIVEKMSGASRLIVMCEDGVTRNCRIPGKMKKRMWIREGDLVIVKPWEFQDEKGDIIYRYTKTQAAYLSRNHMLPE 99          
BLAST of CV887377 vs. ExPASy Swiss-Prot
Match: IF1A1_HALWD (Translation initiation factor 1A 1 OS=Haloquadratum walsbyi (strain DSM 16790) GN=eif1a1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.278e-11
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = -2
Query:  384 ADDEKR---ELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGEL 656
            +DDE R   +L   +D + +A V  MLG  R    C DG +R   I G+M K++WI   D++LV   D+QD+K D+  +Y   EA  L+  G +
Sbjct:    2 SDDENRGSHDLRMPDDDEVFAVVTNMLGANRVTVRCADGNERTARIPGRMQKRIWIREDDVVLVEPWDWQDEKGDITWRYEKSEADQLREEGRI 95          
BLAST of CV887377 vs. ExPASy Swiss-Prot
Match: IF1A_METLZ (Translation initiation factor 1A OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.658e-11
Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = -2
Query:  393 QEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAY 614
            +++AQ   MLG+      C DG  RL  I+GK+ K+VWI  GDI++V   D+QDDK D+I +Y   +   L+A+
Sbjct:   29 EQFAQAELMLGSNHIRVRCSDGVTRLGRIKGKIKKRVWIREGDILIVVPWDFQDDKCDIIYRYTTPQVDWLRAH 102          
BLAST of CV887377 vs. ExPASy Swiss-Prot
Match: IF1A_DESK1 (Translation initiation factor 1A OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.658e-11
Identity = 34/82 (41.46%), Postives = 47/82 (57.32%), Query Frame = -2
Query:  378 EDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE 623
            ++G     V+R LG     A C+DG  R   I GK+ +KVWI  GDIILVGL D+  +K +V+ KY  +E   L   G +P+
Sbjct:   25 DEGTIICGVVRHLGGDYLIAKCLDGVDRKIRIPGKLRRKVWITEGDIILVGLWDFSSEKGEVVYKYGKNEVNKLVEKGVVPK 106          
The following BLAST results are available for this feature:
BLAST of CV887377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
IF1A_SULIA2.691e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]
IF1A_METKA2.691e-1236.96Translation initiation factor 1A OS=Methanopyrus k... [more]
IF1A_SULSO3.515e-1240.00Translation initiation factor 1A OS=Sulfolobus sol... [more]
IF1A_HALS33.515e-1240.23Translation initiation factor 1A OS=Halobacterium ... [more]
IF1A1_HALSA3.515e-1240.23Translation initiation factor 1A 1 OS=Halobacteriu... [more]
IF1A_PICTO1.744e-1140.96Translation initiation factor 1A OS=Picrophilus to... [more]
IF1A1_HALWD2.278e-1137.23Translation initiation factor 1A 1 OS=Haloquadratu... [more]
IF1A_METLZ8.658e-1141.89Translation initiation factor 1A OS=Methanocorpusc... [more]
IF1A_DESK18.658e-1141.46Translation initiation factor 1A OS=Desulfurococcu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030H08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887377 ID=CV887377; Name=CV887377; organism=Citrus sinensis; type=EST; length=834bp
CCTTGCCCACAATTATTATTGACATTAAAGAATTGAACCATACCAGTATA
AGATTCCATTCTAGAAATACCACTTCAAAAAAAGTGCAGAACTAAACAAA
ATTAATAAGCAAGTAATAGGCGTTACACGAAATATGACAGGCTCACCATT
AAAAATTCCAAATATATAAGCTGCAAACACATATTTTCAGCTTTTAAGTA
ACCAATACATTGGCATACTCCATTTTTGCTAAATATTGAACATAAACCCC
AGACAGAGTCGATTCTCGGAGCCTAGATCTTATCAATATCTTCGTCTTCA
AACTCGATGTAATCATTATCAGCGCCATCATCCTCTTCATCAAGACCACC
AGCAATGCCCTCATTGAGACGGGTACTCTCTGGAAGTTCACCATAAGCCT
TCAGAAGCCTTGCCTCGTCGGGCATATACTTGAGGATGACATCAGCCTTG
TCATCCTGATAATCACGTAGGCCAACAAGTATTATATCACCAGCTGCAAT
CCAAACCTTTTTGTGCATCTTCCCACGGATGTGGCAAAGACGCTTGGTTC
CATCGATGCACATAGCTTCACACCGACCATTGCCGAGCATACGAAGGACT
TGGGCATATTCCTGTCCGTCTTCCTTGAAGACAAGCTCACGCTTCTCGTC
GTCAGCTTCATTCTTTCCCCTCTTCCTGTTCTTTCCTCCCTTTCCCTTAT
TCTTCGGCATGGTTTCTGATTCTTTGGGGGAGAGGTGGAGTCGGAGAGTT
AAAAAGCAGCAAGATTGAAATCAATCTGTTTCTGAGAGGTTATAACTACG
AACCCTAGCGTTTTTGTACCGAAAAGATCAGCCT
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