CV887373
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_MYCA1 (Peptidyl-tRNA hydrolase OS=Mycobacterium avium (strain 104) GN=pth PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 4.328e-23 Identity = 49/123 (39.84%), Postives = 72/123 (58.54%), Query Frame = -2 Query: 460 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 828 V++AKP+ YMN SG GPLA +Y +P ++V HDD+ L G L+SV N G+++F R+RIGIGRPPG+ DP AF+L+ F + R + T ++ + +LL+ GL Sbjct: 60 VVVAKPRCYMNESGRQVGPLAKFYSVPPGDIIVIHDDLDLDFGRIRLKIGGGEGGHNGLRSVSNAL-GSKDFQRVRIGIGRPPGRKDPAAFVLENFTSTERADVPTICEQAADATELLIELGL 181 HSP 2 Score: 33.8834 bits (76), Expect = 4.328e-23 Identity = 15/27 (55.56%), Postives = 16/27 (59.26%), Query Frame = -3 Query: 891 GNPGDKYKGTRPNVGFEMIDAFAESQG 971 GNPGD Y TR NVGF + D A G Sbjct: 11 GNPGDNYARTRHNVGFMVADLLAARMG 37
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_CHLAD (Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pth PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 5.635e-23 Identity = 47/134 (35.07%), Postives = 73/134 (54.48%), Query Frame = -2 Query: 430 VLLAKPQTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTI 828 V L KPQTYMNLSG++ L +YK+ P +LV +DD+ LP ++S++ G EF RLRIGIG+PPGQMD ++L +F + L + +++++S+GLT + +N + Sbjct: 56 VALVKPQTYMNLSGQAVAALRQWYKIDPARELLVIYDDLDLPFAKLRLRERGSAGTHNGMRSIVGQL-GTTEFPRLRIGIGQPPGQMDAADYVLSRFTPEEEAVLPEVLARVADAVEVVVSEGLTAAMNRYNPL 188 HSP 2 Score: 42.3578 bits (98), Expect = 5.635e-23 Identity = 15/44 (34.09%), Postives = 26/44 (59.09%), Query Frame = -3 Query: 840 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 971 GNPG++Y TR N+GF ++ AE G++ K+ +G++ Sbjct: 8 GNPGERYARTRHNIGFRSVETLAERHGLTFRNQRAKSEIAEGII 51
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_FRASC (Peptidyl-tRNA hydrolase OS=Frankia sp. (strain CcI3) GN=pth PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.824e-22 Identity = 46/150 (30.67%), Postives = 83/150 (55.33%), Query Frame = -2 Query: 430 HGSLQSYFRTRFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTI 879 H S TR G A +LA+P ++MNLSG ++YK+ ++R++V HD++ +P G L+S+ + G R++ R+R+GIGRPPG+MDP F+L+ F + R + L+ + +++L++ GL + ++ + Sbjct: 49 HRSRADVAETRLAG-ARAVLARPLSFMNLSGGPVAAARSFYKVEVSRLIVVHDELDIPFGAVRLKRGGGDNGHNGLRSISSAL-GTRDYLRVRVGIGRPPGRMDPADFVLRDFTSTERRELPLLLEHAADSVEMLIADGLEPAQNRYHAL 196 HSP 2 Score: 34.6538 bits (78), Expect = 7.824e-22 Identity = 15/37 (40.54%), Postives = 20/37 (54.05%), Query Frame = -3 Query: 861 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKA 971 GNPG Y G R N GF ++D AE G + + +A Sbjct: 17 GNPGPTYAGNRHNAGFMVVDLLAERTGSRLKSHRSRA 53
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_CARHZ (Peptidyl-tRNA hydrolase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=pth PE=3 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 7.838e-22 Identity = 49/131 (37.40%), Postives = 74/131 (56.49%), Query Frame = -2 Query: 436 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 828 VLL KPQTYMNLSG + ++YKLPL+R++V +DD+ LP G + S+++ G+ E RL+IGIGR P D K ++LQ F RE ++ L+ E + + L++G ++ FN Sbjct: 56 VLLLKPQTYMNLSGTAVQEAVSFYKLPLSRLVVVYDDLDLPLGKIRLRLKGSAGGHRGMGSIISCL-GSEEIPRLKIGIGR-PAVGDVKDYVLQPFTGAEREILEPTLKLAAEAITVALTEGFNKAMTDFN 184 HSP 2 Score: 40.0466 bits (92), Expect = 7.838e-22 Identity = 17/42 (40.48%), Postives = 25/42 (59.52%), Query Frame = -3 Query: 846 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQG 971 GNPG +Y+ TR N GF ++D A+ GI + K+ G+G Sbjct: 8 GNPGQEYENTRHNAGFMVVDELAKKHGILITKRKFKSLVGEG 49
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_CLOD6 (Peptidyl-tRNA hydrolase OS=Clostridium difficile (strain 630) GN=pth PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 7.838e-22 Identity = 42/136 (30.88%), Postives = 71/136 (52.21%), Query Frame = -2 Query: 436 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 843 VG VLL KPQTYMNLSGE+ + YYK+ L+ ++V +DD+ L G +KS+ G+ +F R+R+G+ +P D F+L +F + I+ AL++ + + ++ + + S +N Sbjct: 51 VGTEKVLLVKPQTYMNLSGETLIDIYKYYKVDLSNIVVVYDDIDLEVGKIRIRKKGSGGTHNGMKSI-TKCLGSNDFPRVRVGVSKPEAGQDLADFVLSRFRKEESDNINEALEKAADAIDSIIRENIDMSMNKYN 185 HSP 2 Score: 46.9802 bits (110), Expect = 7.838e-22 Identity = 21/42 (50.00%), Postives = 28/42 (66.67%), Query Frame = -3 Query: 846 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQG 971 GNPG KY+ TR NVGF++ID A+ IS+ + KA G+G Sbjct: 8 GNPGKKYEKTRHNVGFDVIDILAKEYNISVTKIKHKALIGEG 49
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_MYCVP (Peptidyl-tRNA hydrolase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=pth PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.019e-21 Identity = 46/124 (37.10%), Postives = 74/124 (59.68%), Query Frame = -2 Query: 460 PVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 831 PV+LAKP+ YMN SG GPLA +Y + V++ HD++ + G L+SV + GN +F R+R+GIGRPPG +F+L+ FN++ R+ + T L++ + +LL+++GL Sbjct: 59 PVVLAKPRVYMNESGRQVGPLAKFYSVAPADVVIVHDELDIDFGRIRLKAGGGVAGHNGLRSVASALGGN-DFQRVRVGIGRPPGHKSGASFVLENFNSVERKEVPTILEQAADATELLVAQGL 181 HSP 2 Score: 32.7278 bits (73), Expect = 1.019e-21 Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = -3 Query: 891 GNPGDKYKGTRPNVGFEMIDAFAESQG 971 GNPG +Y TR N GF ++D A+ G Sbjct: 11 GNPGPQYATTRHNAGFMVVDILADRMG 37
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_MYCS2 (Peptidyl-tRNA hydrolase OS=Mycobacterium smegmatis GN=pth PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.019e-21 Identity = 47/123 (38.21%), Postives = 74/123 (60.16%), Query Frame = -2 Query: 460 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 828 V+LAKP+ YMN SG GPLA +Y +P +++V HD++ + G L+SV + G + F R+RIG+GRPPG+ DP AF+L+ F A R + T +++ + +LL+++GL Sbjct: 60 VVLAKPRCYMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLRSVASAL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTAAERAEVPTIVEQAADATELLIAQGL 181 HSP 2 Score: 29.261 bits (64), Expect = 1.019e-21 Identity = 17/37 (45.95%), Postives = 20/37 (54.05%), Query Frame = -3 Query: 861 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKA 971 GNPG Y TR N+GF + D A G S VH K+ Sbjct: 11 GNPGPTYAKTRHNLGFMVADVLAGRIG-SAFKVHKKS 46
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_CHLSY (Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=pth PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 2.246e-21 Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = -2 Query: 430 VLLAKPQTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTI 828 V+LAKPQTYMNLSG++ L +YK+ P +LV +DD+ LP ++S++ G EF RLR+GIG+PPG+MD ++L +F + L + ++++L +GLT + +N + Sbjct: 56 VVLAKPQTYMNLSGQAVVALCNWYKIDPARELLVIYDDLDLPFAKLRIRERGSAGTHNGMRSIVAQL-GTTEFPRLRVGIGQPPGKMDAADYVLGRFTPDEEAALPDLLGRIADAVEVILREGLTTAMNRYNPL 188 HSP 2 Score: 40.0466 bits (92), Expect = 2.246e-21 Identity = 15/42 (35.71%), Postives = 23/42 (54.76%), Query Frame = -3 Query: 846 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQG 971 GNPG++Y TR N+GF +D AE G++ + +G Sbjct: 8 GNPGERYARTRHNIGFRSVDTLAERHGLTFRPQRANSQLAEG 49
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_CHLAA (Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=pth PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 2.246e-21 Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = -2 Query: 430 VLLAKPQTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTI 828 V+LAKPQTYMNLSG++ L +YK+ P +LV +DD+ LP ++S++ G EF RLR+GIG+PPG+MD ++L +F + L + ++++L +GLT + +N + Sbjct: 56 VVLAKPQTYMNLSGQAVVALCNWYKIDPARELLVIYDDLDLPFAKLRIRERGSAGTHNGMRSIVAQL-GTTEFPRLRVGIGQPPGKMDAADYVLGRFTPDEEAALPDLLGRIADAVEVILREGLTTAMNRYNPL 188 HSP 2 Score: 40.0466 bits (92), Expect = 2.246e-21 Identity = 15/42 (35.71%), Postives = 23/42 (54.76%), Query Frame = -3 Query: 846 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQG 971 GNPG++Y TR N+GF +D AE G++ + +G Sbjct: 8 GNPGERYARTRHNIGFRSVDTLAERHGLTFRPQRANSQLAEG 49
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_NOCFA (Peptidyl-tRNA hydrolase OS=Nocardia farcinica GN=pth PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 3.796e-21 Identity = 45/123 (36.59%), Postives = 71/123 (57.72%), Query Frame = -2 Query: 460 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 828 VL+AKP++YMNLSG LA ++ +P V+V HD++ LP G L+S+ + +++ R RIGIGRPPG+ DP F+L+ F A R+ + +++ + ++LLL GL Sbjct: 64 VLIAKPRSYMNLSGRPVAALARFFSVPPTEVIVVHDELDLPFGAVRLKRGGGEGGHNGLRSISSALT-TKDYLRTRIGIGRPPGRQDPADFVLKPFAAAERKEVPVIVEQAADAVELLLRVGL 185 HSP 2 Score: 34.2686 bits (77), Expect = 3.796e-21 Identity = 15/27 (55.56%), Postives = 18/27 (66.67%), Query Frame = -3 Query: 891 GNPGDKYKGTRPNVGFEMIDAFAESQG 971 GNPG +Y+ TR NVGF + D AE G Sbjct: 15 GNPGSEYERTRHNVGFLVADVLAERVG 41 The following BLAST results are available for this feature:
BLAST of CV887373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CV887373 ID=CV887373; Name=CV887373; organism=Citrus sinensis; type=EST; length=973bpback to top |