CV887373

Overview
NameCV887373
Unique NameCV887373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length973
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_MYCA1 (Peptidyl-tRNA hydrolase OS=Mycobacterium avium (strain 104) GN=pth PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.328e-23
Identity = 49/123 (39.84%), Postives = 72/123 (58.54%), Query Frame = -2
Query:  460 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 828
            V++AKP+ YMN SG   GPLA +Y +P   ++V HDD+ L  G               L+SV N   G+++F R+RIGIGRPPG+ DP AF+L+ F +  R  + T  ++  +  +LL+  GL
Sbjct:   60 VVVAKPRCYMNESGRQVGPLAKFYSVPPGDIIVIHDDLDLDFGRIRLKIGGGEGGHNGLRSVSNAL-GSKDFQRVRIGIGRPPGRKDPAAFVLENFTSTERADVPTICEQAADATELLIELGL 181          

HSP 2 Score: 33.8834 bits (76), Expect = 4.328e-23
Identity = 15/27 (55.56%), Postives = 16/27 (59.26%), Query Frame = -3
Query:  891 GNPGDKYKGTRPNVGFEMIDAFAESQG 971
            GNPGD Y  TR NVGF + D  A   G
Sbjct:   11 GNPGDNYARTRHNVGFMVADLLAARMG 37          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_CHLAD (Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pth PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.635e-23
Identity = 47/134 (35.07%), Postives = 73/134 (54.48%), Query Frame = -2
Query:  430 VLLAKPQTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTI 828
            V L KPQTYMNLSG++   L  +YK+ P   +LV +DD+ LP                 ++S++    G  EF RLRIGIG+PPGQMD   ++L +F       +   L    + +++++S+GLT +   +N +
Sbjct:   56 VALVKPQTYMNLSGQAVAALRQWYKIDPARELLVIYDDLDLPFAKLRLRERGSAGTHNGMRSIVGQL-GTTEFPRLRIGIGQPPGQMDAADYVLSRFTPEEEAVLPEVLARVADAVEVVVSEGLTAAMNRYNPL 188          

HSP 2 Score: 42.3578 bits (98), Expect = 5.635e-23
Identity = 15/44 (34.09%), Postives = 26/44 (59.09%), Query Frame = -3
Query:  840 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 971
            GNPG++Y  TR N+GF  ++  AE  G++      K+   +G++
Sbjct:    8 GNPGERYARTRHNIGFRSVETLAERHGLTFRNQRAKSEIAEGII 51          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_FRASC (Peptidyl-tRNA hydrolase OS=Frankia sp. (strain CcI3) GN=pth PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.824e-22
Identity = 46/150 (30.67%), Postives = 83/150 (55.33%), Query Frame = -2
Query:  430 HGSLQSYFRTRFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTI 879
            H S      TR  G A  +LA+P ++MNLSG       ++YK+ ++R++V HD++ +P G               L+S+ +   G R++ R+R+GIGRPPG+MDP  F+L+ F +  R  +   L+   + +++L++ GL  +   ++ +
Sbjct:   49 HRSRADVAETRLAG-ARAVLARPLSFMNLSGGPVAAARSFYKVEVSRLIVVHDELDIPFGAVRLKRGGGDNGHNGLRSISSAL-GTRDYLRVRVGIGRPPGRMDPADFVLRDFTSTERRELPLLLEHAADSVEMLIADGLEPAQNRYHAL 196          

HSP 2 Score: 34.6538 bits (78), Expect = 7.824e-22
Identity = 15/37 (40.54%), Postives = 20/37 (54.05%), Query Frame = -3
Query:  861 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKA 971
            GNPG  Y G R N GF ++D  AE  G  + +   +A
Sbjct:   17 GNPGPTYAGNRHNAGFMVVDLLAERTGSRLKSHRSRA 53          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_CARHZ (Peptidyl-tRNA hydrolase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=pth PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 7.838e-22
Identity = 49/131 (37.40%), Postives = 74/131 (56.49%), Query Frame = -2
Query:  436 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 828
            VLL KPQTYMNLSG +     ++YKLPL+R++V +DD+ LP G               + S+++   G+ E  RL+IGIGR P   D K ++LQ F    RE ++  L+   E + + L++G  ++   FN
Sbjct:   56 VLLLKPQTYMNLSGTAVQEAVSFYKLPLSRLVVVYDDLDLPLGKIRLRLKGSAGGHRGMGSIISCL-GSEEIPRLKIGIGR-PAVGDVKDYVLQPFTGAEREILEPTLKLAAEAITVALTEGFNKAMTDFN 184          

HSP 2 Score: 40.0466 bits (92), Expect = 7.838e-22
Identity = 17/42 (40.48%), Postives = 25/42 (59.52%), Query Frame = -3
Query:  846 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQG 971
            GNPG +Y+ TR N GF ++D  A+  GI +     K+  G+G
Sbjct:    8 GNPGQEYENTRHNAGFMVVDELAKKHGILITKRKFKSLVGEG 49          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_CLOD6 (Peptidyl-tRNA hydrolase OS=Clostridium difficile (strain 630) GN=pth PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.838e-22
Identity = 42/136 (30.88%), Postives = 71/136 (52.21%), Query Frame = -2
Query:  436 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 843
            VG   VLL KPQTYMNLSGE+   +  YYK+ L+ ++V +DD+ L  G               +KS+     G+ +F R+R+G+ +P    D   F+L +F     + I+ AL++  + +  ++ + +  S   +N
Sbjct:   51 VGTEKVLLVKPQTYMNLSGETLIDIYKYYKVDLSNIVVVYDDIDLEVGKIRIRKKGSGGTHNGMKSI-TKCLGSNDFPRVRVGVSKPEAGQDLADFVLSRFRKEESDNINEALEKAADAIDSIIRENIDMSMNKYN 185          

HSP 2 Score: 46.9802 bits (110), Expect = 7.838e-22
Identity = 21/42 (50.00%), Postives = 28/42 (66.67%), Query Frame = -3
Query:  846 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQG 971
            GNPG KY+ TR NVGF++ID  A+   IS+  +  KA  G+G
Sbjct:    8 GNPGKKYEKTRHNVGFDVIDILAKEYNISVTKIKHKALIGEG 49          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_MYCVP (Peptidyl-tRNA hydrolase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=pth PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.019e-21
Identity = 46/124 (37.10%), Postives = 74/124 (59.68%), Query Frame = -2
Query:  460 PVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 831
            PV+LAKP+ YMN SG   GPLA +Y +    V++ HD++ +  G               L+SV +   GN +F R+R+GIGRPPG     +F+L+ FN++ R+ + T L++  +  +LL+++GL
Sbjct:   59 PVVLAKPRVYMNESGRQVGPLAKFYSVAPADVVIVHDELDIDFGRIRLKAGGGVAGHNGLRSVASALGGN-DFQRVRVGIGRPPGHKSGASFVLENFNSVERKEVPTILEQAADATELLVAQGL 181          

HSP 2 Score: 32.7278 bits (73), Expect = 1.019e-21
Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = -3
Query:  891 GNPGDKYKGTRPNVGFEMIDAFAESQG 971
            GNPG +Y  TR N GF ++D  A+  G
Sbjct:   11 GNPGPQYATTRHNAGFMVVDILADRMG 37          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_MYCS2 (Peptidyl-tRNA hydrolase OS=Mycobacterium smegmatis GN=pth PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.019e-21
Identity = 47/123 (38.21%), Postives = 74/123 (60.16%), Query Frame = -2
Query:  460 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 828
            V+LAKP+ YMN SG   GPLA +Y +P  +++V HD++ +  G               L+SV +   G + F R+RIG+GRPPG+ DP AF+L+ F A  R  + T +++  +  +LL+++GL
Sbjct:   60 VVLAKPRCYMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLRSVASAL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTAAERAEVPTIVEQAADATELLIAQGL 181          

HSP 2 Score: 29.261 bits (64), Expect = 1.019e-21
Identity = 17/37 (45.95%), Postives = 20/37 (54.05%), Query Frame = -3
Query:  861 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKA 971
            GNPG  Y  TR N+GF + D  A   G S   VH K+
Sbjct:   11 GNPGPTYAKTRHNLGFMVADVLAGRIG-SAFKVHKKS 46          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_CHLSY (Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=pth PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.246e-21
Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = -2
Query:  430 VLLAKPQTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTI 828
            V+LAKPQTYMNLSG++   L  +YK+ P   +LV +DD+ LP                 ++S++    G  EF RLR+GIG+PPG+MD   ++L +F       +   L    + ++++L +GLT +   +N +
Sbjct:   56 VVLAKPQTYMNLSGQAVVALCNWYKIDPARELLVIYDDLDLPFAKLRIRERGSAGTHNGMRSIVAQL-GTTEFPRLRVGIGQPPGKMDAADYVLGRFTPDEEAALPDLLGRIADAVEVILREGLTTAMNRYNPL 188          

HSP 2 Score: 40.0466 bits (92), Expect = 2.246e-21
Identity = 15/42 (35.71%), Postives = 23/42 (54.76%), Query Frame = -3
Query:  846 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQG 971
            GNPG++Y  TR N+GF  +D  AE  G++       +   +G
Sbjct:    8 GNPGERYARTRHNIGFRSVDTLAERHGLTFRPQRANSQLAEG 49          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_CHLAA (Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=pth PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.246e-21
Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = -2
Query:  430 VLLAKPQTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTI 828
            V+LAKPQTYMNLSG++   L  +YK+ P   +LV +DD+ LP                 ++S++    G  EF RLR+GIG+PPG+MD   ++L +F       +   L    + ++++L +GLT +   +N +
Sbjct:   56 VVLAKPQTYMNLSGQAVVALCNWYKIDPARELLVIYDDLDLPFAKLRIRERGSAGTHNGMRSIVAQL-GTTEFPRLRVGIGQPPGKMDAADYVLGRFTPDEEAALPDLLGRIADAVEVILREGLTTAMNRYNPL 188          

HSP 2 Score: 40.0466 bits (92), Expect = 2.246e-21
Identity = 15/42 (35.71%), Postives = 23/42 (54.76%), Query Frame = -3
Query:  846 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQG 971
            GNPG++Y  TR N+GF  +D  AE  G++       +   +G
Sbjct:    8 GNPGERYARTRHNIGFRSVDTLAERHGLTFRPQRANSQLAEG 49          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_NOCFA (Peptidyl-tRNA hydrolase OS=Nocardia farcinica GN=pth PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.796e-21
Identity = 45/123 (36.59%), Postives = 71/123 (57.72%), Query Frame = -2
Query:  460 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 828
            VL+AKP++YMNLSG     LA ++ +P   V+V HD++ LP G               L+S+ +     +++ R RIGIGRPPG+ DP  F+L+ F A  R+ +   +++  + ++LLL  GL
Sbjct:   64 VLIAKPRSYMNLSGRPVAALARFFSVPPTEVIVVHDELDLPFGAVRLKRGGGEGGHNGLRSISSALT-TKDYLRTRIGIGRPPGRQDPADFVLKPFAAAERKEVPVIVEQAADAVELLLRVGL 185          

HSP 2 Score: 34.2686 bits (77), Expect = 3.796e-21
Identity = 15/27 (55.56%), Postives = 18/27 (66.67%), Query Frame = -3
Query:  891 GNPGDKYKGTRPNVGFEMIDAFAESQG 971
            GNPG +Y+ TR NVGF + D  AE  G
Sbjct:   15 GNPGSEYERTRHNVGFLVADVLAERVG 41          
The following BLAST results are available for this feature:
BLAST of CV887373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_MYCA14.328e-2339.84Peptidyl-tRNA hydrolase OS=Mycobacterium avium (st... [more]
PTH_CHLAD5.635e-2335.07Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans ... [more]
PTH_FRASC7.824e-2230.67Peptidyl-tRNA hydrolase OS=Frankia sp. (strain CcI... [more]
PTH_CARHZ7.838e-2237.40Peptidyl-tRNA hydrolase OS=Carboxydothermus hydrog... [more]
PTH_CLOD67.838e-2230.88Peptidyl-tRNA hydrolase OS=Clostridium difficile (... [more]
PTH_MYCVP1.019e-2137.10Peptidyl-tRNA hydrolase OS=Mycobacterium vanbaalen... [more]
PTH_MYCS21.019e-2138.21Peptidyl-tRNA hydrolase OS=Mycobacterium smegmatis... [more]
PTH_CHLSY2.246e-2134.33Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacu... [more]
PTH_CHLAA2.246e-2134.33Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacu... [more]
PTH_NOCFA3.796e-2136.59Peptidyl-tRNA hydrolase OS=Nocardia farcinica GN=p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030H06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887373 ID=CV887373; Name=CV887373; organism=Citrus sinensis; type=EST; length=973bp
TGCAATATACATAATATAATAAAGTACACCAAATTGCACAAAACATGATA
TTTATAGGCCAGCAACGAAAGCTATATCATAAATTCCTAGAGGATTGACT
GTTTTGCTTTCATAATGGTCAGACCTTCAGTTGGCTACGACCATGACACT
GGGAAAAGTCTCCAAATTTGAGAAGTGCTGATTTGCTGCAAAATGAACAG
ACAAAGCAATTCAGTTTGCTAATTGGGCTAAGCCATTCACTTACGTCGTT
AGAAGTATTCTCTCATTGGGATGGGTGGTTTCGCCTCCTCTCTCCTCGGT
GATTTTAAATATTTGTATGTATTATACAAATGCGGCCATGAAGAACCATT
CGGTGCTTTTGTGGTTGTCATCGAAGGTACCAATAGCTCATGCTGGCATG
TTTTGCAATCTTATGTGCTTGTATTTTTGTATGGTGTTGAAATGTCTAGC
ACTCTCTGTCAAGCCTTTAGATAAAAGCAGCTTCAGAACCTCAACCCCTT
CTTGCAAAGCAGTATCAATTCGCTCTCGAGCTATTGCATTAAACTTCTGC
AGCAAGAAAGCTTTAGGATCCATTTGACCAGGAGGCCTCCCAATACCAAT
TCTTAGCCGAGCAAATTCTCGGTTACCTCGAAAGTTGTTCATCACACTCT
TCAGCCCATTGTGGCCTCCATGACCTCCATTGTGGCGCAGACGAAGCACT
CCACAAGGTAAGCCCATGTCATCATGAAACACAAGAACACGATTAAGAGG
TAACTTATAATAAGCTGCAAGTGGTCCAGTAGATTCACCGCTCAGATTCA
TGTAAGTCTGTGGCTTTGCAAGGAGTACAGGGGCATCACCAACAAACCTT
GTCCGAAAGTAGCTTTGCAATGAACCGTGTTCATAGAAATCCCTTGTGAT
TCAGCAAATGCGTCGATCATCTCAAACCCCACATTGGGTCTAGTTCCTTT
GTATTTATCTCCCGGGTTACCCA
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