CV887373 | Citrus Genome Database

Overview


Name	CV887373
Unique Name	CV887373
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	973

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library UCRCS04-UCR	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_MYCTU (Peptidyl-tRNA hydrolase OS=Mycobacterium tuberculosis GN=pth PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.856e-20
Identity = 46/123 (37.40%), Postives = 70/123 (56.91%), Query Frame = -2

Query:  460 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 828
            ++LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G               L+SV+    G ++F R+RIGIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ +G+
Sbjct:   60 LVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGM 181

HSP 2 Score: 28.8758 bits (63), Expect = 6.856e-20
Identity = 13/27 (48.15%), Postives = 15/27 (55.56%), Query Frame = -3

Query:  891 GNPGDKYKGTRPNVGFEMIDAFAESQG 971
            GNPG  Y  TR N+GF + D  A   G
Sbjct:   11 GNPGANYARTRHNLGFVVADLLAARLG 37

BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_MYCTA (Peptidyl-tRNA hydrolase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=pth PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.856e-20
Identity = 46/123 (37.40%), Postives = 70/123 (56.91%), Query Frame = -2

Query:  460 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 828
            ++LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G               L+SV+    G ++F R+RIGIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ +G+
Sbjct:   60 LVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGM 181

HSP 2 Score: 28.8758 bits (63), Expect = 6.856e-20
Identity = 13/27 (48.15%), Postives = 15/27 (55.56%), Query Frame = -3

Query:  891 GNPGDKYKGTRPNVGFEMIDAFAESQG 971
            GNPG  Y  TR N+GF + D  A   G
Sbjct:   11 GNPGANYARTRHNLGFVVADLLAARLG 37

BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_MYCBT (Peptidyl-tRNA hydrolase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=pth PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.856e-20
Identity = 46/123 (37.40%), Postives = 70/123 (56.91%), Query Frame = -2

Query:  460 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 828
            ++LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G               L+SV+    G ++F R+RIGIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ +G+
Sbjct:   60 LVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGM 181

HSP 2 Score: 28.8758 bits (63), Expect = 6.856e-20
Identity = 13/27 (48.15%), Postives = 15/27 (55.56%), Query Frame = -3

Query:  891 GNPGDKYKGTRPNVGFEMIDAFAESQG 971
            GNPG  Y  TR N+GF + D  A   G
Sbjct:   11 GNPGANYARTRHNLGFVVADLLAARLG 37

BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_MYCBP (Peptidyl-tRNA hydrolase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=pth PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.856e-20
Identity = 46/123 (37.40%), Postives = 70/123 (56.91%), Query Frame = -2

Query:  460 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 828
            ++LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G               L+SV+    G ++F R+RIGIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ +G+
Sbjct:   60 LVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGM 181

HSP 2 Score: 28.8758 bits (63), Expect = 6.856e-20
Identity = 13/27 (48.15%), Postives = 15/27 (55.56%), Query Frame = -3

Query:  891 GNPGDKYKGTRPNVGFEMIDAFAESQG 971
            GNPG  Y  TR N+GF + D  A   G
Sbjct:   11 GNPGANYARTRHNLGFVVADLLAARLG 37

BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_MYCBO (Peptidyl-tRNA hydrolase OS=Mycobacterium bovis GN=pth PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.856e-20
Identity = 46/123 (37.40%), Postives = 70/123 (56.91%), Query Frame = -2

Query:  460 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 828
            ++LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G               L+SV+    G ++F R+RIGIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ +G+
Sbjct:   60 LVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGM 181

HSP 2 Score: 28.8758 bits (63), Expect = 6.856e-20
Identity = 13/27 (48.15%), Postives = 15/27 (55.56%), Query Frame = -3

Query:  891 GNPGDKYKGTRPNVGFEMIDAFAESQG 971
            GNPG  Y  TR N+GF + D  A   G
Sbjct:   11 GNPGANYARTRHNLGFVVADLLAARLG 37

BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_BACCZ (Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain ZK / E33L) GN=pth PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.861e-20
Identity = 44/142 (30.99%), Postives = 73/142 (51.41%), Query Frame = -2

Query:  433 FRTRFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 858
            F   FV    V+L KP TYMNLSGES  PL  YYK+ +   +V +DD+ +P G               +KS +++  G +EF R+R+GI RP   M    ++L +F +     ++ ++++  +  +  L+K   +    FN+
Sbjct:   46 FGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL-GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIMNTFNS 186

HSP 2 Score: 42.3578 bits (98), Expect = 6.861e-20
Identity = 20/44 (45.45%), Postives = 26/44 (59.09%), Query Frame = -3

Query:  840 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 971
            GNPG +Y+ TR N+GF  ID  A+   IS+N    K  FG G +
Sbjct:    8 GNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGVFGAGFV 51

BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_BACCR (Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=pth PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 6.861e-20
Identity = 44/142 (30.99%), Postives = 73/142 (51.41%), Query Frame = -2

Query:  433 FRTRFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 858
            F   FV    V+L KP TYMNLSGES  PL  YYK+ +   +V +DD+ +P G               +KS +++  G +EF R+R+GI RP   M    ++L +F +     ++ ++++  +  +  L+K   +    FN+
Sbjct:   46 FGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVEDFVVMYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL-GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIMNTFNS 186

HSP 2 Score: 42.3578 bits (98), Expect = 6.861e-20
Identity = 20/44 (45.45%), Postives = 26/44 (59.09%), Query Frame = -3

Query:  840 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 971
            GNPG +Y+ TR N+GF  ID  A+   IS+N    K  FG G +
Sbjct:    8 GNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGVFGAGFV 51

BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_BACCQ (Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain Q1) GN=pth PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.861e-20
Identity = 44/142 (30.99%), Postives = 73/142 (51.41%), Query Frame = -2

Query:  433 FRTRFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 858
            F   FV    V+L KP TYMNLSGES  PL  YYK+ +   +V +DD+ +P G               +KS +++  G +EF R+R+GI RP   M    ++L +F +     ++ ++++  +  +  L+K   +    FN+
Sbjct:   46 FGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL-GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIMNTFNS 186

HSP 2 Score: 42.3578 bits (98), Expect = 6.861e-20
Identity = 20/44 (45.45%), Postives = 26/44 (59.09%), Query Frame = -3

Query:  840 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 971
            GNPG +Y+ TR N+GF  ID  A+   IS+N    K  FG G +
Sbjct:    8 GNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGVFGAGFV 51

BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_BACC1 (Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain ATCC 10987) GN=pth PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 6.861e-20
Identity = 44/142 (30.99%), Postives = 73/142 (51.41%), Query Frame = -2

Query:  433 FRTRFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 858
            F   FV    V+L KP TYMNLSGES  PL  YYK+ +   +V +DD+ +P G               +KS +++  G +EF R+R+GI RP   M    ++L +F +     ++ ++++  +  +  L+K   +    FN+
Sbjct:   46 FGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL-GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPGVNHSIEKAADACEEWLNKPFLQIMNTFNS 186

HSP 2 Score: 42.3578 bits (98), Expect = 6.861e-20
Identity = 20/44 (45.45%), Postives = 26/44 (59.09%), Query Frame = -3

Query:  840 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 971
            GNPG +Y+ TR N+GF  ID  A+   IS+N    K  FG G +
Sbjct:    8 GNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGVFGAGFV 51

BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_HERA2 (Peptidyl-tRNA hydrolase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=pth PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.892e-20
Identity = 49/132 (37.12%), Postives = 71/132 (53.79%), Query Frame = -2

Query:  436 VLLAKPQTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 828
            V LA+PQT+MN SG+S   L  +YK+ P + +LV +DD+ LP G               + S++    G ++FARLR GIGRPP   +   F+L  +NA  RE +       VE  +L LS G+T++    N
Sbjct:   56 VALARPQTFMNDSGKSVVGLVNWYKIDPASELLVVYDDLDLPFGTIKLRNQGSSGGQRGMNSIIQ-LLGTQKFARLRFGIGRPPEGWEVINFVLGNWNAAERETLPKLYDRAVEACELCLSDGVTKAMNAVN 186

HSP 2 Score: 38.1206 bits (87), Expect = 8.892e-20
Identity = 17/44 (38.64%), Postives = 24/44 (54.55%), Query Frame = -3

Query:  840 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 971
            GNPG+KY   R NVGF+ +  FA    +S +     A   +GL+
Sbjct:    8 GNPGEKYLNNRHNVGFQCVAEFARRHHLSFDGKRSDARIAEGLV 51

The following BLAST results are available for this feature:

BLAST of CV887373 vs. ExPASy Swiss-Prot

BLAST of CV887373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
PTH_MYCTU	6.856e-20	37.40	Peptidyl-tRNA hydrolase OS=Mycobacterium tuberculo...	[more]
PTH_MYCTA	6.856e-20	37.40	Peptidyl-tRNA hydrolase OS=Mycobacterium tuberculo...	[more]
PTH_MYCBT	6.856e-20	37.40	Peptidyl-tRNA hydrolase OS=Mycobacterium bovis (st...	[more]
PTH_MYCBP	6.856e-20	37.40	Peptidyl-tRNA hydrolase OS=Mycobacterium bovis (st...	[more]
PTH_MYCBO	6.856e-20	37.40	Peptidyl-tRNA hydrolase OS=Mycobacterium bovis GN=...	[more]
PTH_BACCZ	6.861e-20	30.99	Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain...	[more]
PTH_BACCR	6.861e-20	30.99	Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain...	[more]
PTH_BACCQ	6.861e-20	30.99	Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain...	[more]
PTH_BACC1	6.861e-20	30.99	Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain...	[more]
PTH_HERA2	8.892e-20	37.12	Peptidyl-tRNA hydrolase OS=Herpetosiphon aurantiac...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS04_2_030H06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_H06, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV887373 ID=CV887373; Name=CV887373; organism=Citrus sinensis; type=EST; length=973bp
TGCAATATACATAATATAATAAAGTACACCAAATTGCACAAAACATGATA
TTTATAGGCCAGCAACGAAAGCTATATCATAAATTCCTAGAGGATTGACT
GTTTTGCTTTCATAATGGTCAGACCTTCAGTTGGCTACGACCATGACACT
GGGAAAAGTCTCCAAATTTGAGAAGTGCTGATTTGCTGCAAAATGAACAG
ACAAAGCAATTCAGTTTGCTAATTGGGCTAAGCCATTCACTTACGTCGTT
AGAAGTATTCTCTCATTGGGATGGGTGGTTTCGCCTCCTCTCTCCTCGGT
GATTTTAAATATTTGTATGTATTATACAAATGCGGCCATGAAGAACCATT
CGGTGCTTTTGTGGTTGTCATCGAAGGTACCAATAGCTCATGCTGGCATG
TTTTGCAATCTTATGTGCTTGTATTTTTGTATGGTGTTGAAATGTCTAGC
ACTCTCTGTCAAGCCTTTAGATAAAAGCAGCTTCAGAACCTCAACCCCTT
CTTGCAAAGCAGTATCAATTCGCTCTCGAGCTATTGCATTAAACTTCTGC
AGCAAGAAAGCTTTAGGATCCATTTGACCAGGAGGCCTCCCAATACCAAT
TCTTAGCCGAGCAAATTCTCGGTTACCTCGAAAGTTGTTCATCACACTCT
TCAGCCCATTGTGGCCTCCATGACCTCCATTGTGGCGCAGACGAAGCACT
CCACAAGGTAAGCCCATGTCATCATGAAACACAAGAACACGATTAAGAGG
TAACTTATAATAAGCTGCAAGTGGTCCAGTAGATTCACCGCTCAGATTCA
TGTAAGTCTGTGGCTTTGCAAGGAGTACAGGGGCATCACCAACAAACCTT
GTCCGAAAGTAGCTTTGCAATGAACCGTGTTCATAGAAATCCCTTGTGAT
TCAGCAAATGCGTCGATCATCTCAAACCCCACATTGGGTCTAGTTCCTTT
GTATTTATCTCCCGGGTTACCCA