CV887373

Overview
NameCV887373
Unique NameCV887373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length973
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_ANASK (Peptidyl-tRNA hydrolase OS=Anaeromyxobacter sp. (strain K) GN=pth PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.317e-19
Identity = 47/136 (34.56%), Postives = 72/136 (52.94%), Query Frame = -2
Query:  436 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 843
            +G   V + KPQTYMN SGE+ G    ++KL L+ ++V HDD+ L                  +KSV N   G+ E+AR+R+G+GRPP +MDP  ++L KF       +D  +++ VE  +L +  G   +    N
Sbjct:   51 LGPERVWIMKPQTYMNHSGEAVGAALRFWKLGLDDLVVVHDDLELDPYRVQLKVGGGHGGHNGVKSV-NAHVGSPEYARVRVGVGRPPPRMDPADYVLGKFAKGEDAELDLCVEQAVEATRLAVELGAARAMNQVN 185          

HSP 2 Score: 35.039 bits (79), Expect = 3.317e-19
Identity = 17/44 (38.64%), Postives = 23/44 (52.27%), Query Frame = -3
Query:  840 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 971
            GNPG++Y  TR NVGF + D  A+  G S +     A   +  L
Sbjct:    8 GNPGEEYARTRHNVGFVVADRLAQLAGASFSAKKFAAELAEARL 51          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_ANAD2 (Peptidyl-tRNA hydrolase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=pth PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.317e-19
Identity = 47/136 (34.56%), Postives = 72/136 (52.94%), Query Frame = -2
Query:  436 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 843
            +G   V + KPQTYMN SGE+ G    ++KL L+ ++V HDD+ L                  +KSV N   G+ E+AR+R+G+GRPP +MDP  ++L KF       +D  +++ VE  +L +  G   +    N
Sbjct:   51 LGPERVWIMKPQTYMNHSGEAVGAALRFWKLGLDDLVVVHDDLELDPYRVQLKVGGGHGGHNGVKSV-NAHVGSPEYARVRVGVGRPPPRMDPADYVLGKFAKGEDAELDLCVEQAVEATRLAVELGAARAMNQVN 185          

HSP 2 Score: 35.039 bits (79), Expect = 3.317e-19
Identity = 17/44 (38.64%), Postives = 23/44 (52.27%), Query Frame = -3
Query:  840 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 971
            GNPG++Y  TR NVGF + D  A+  G S +     A   +  L
Sbjct:    8 GNPGEEYARTRHNVGFVVADRLAQLAGASFSAKKFAAELAEARL 51          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_NITOC (Peptidyl-tRNA hydrolase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=pth PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.317e-19
Identity = 46/127 (36.22%), Postives = 71/127 (55.91%), Query Frame = -2
Query:  442 LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARH 822
            L KP T+MN SG++   L  YY++PL  +L+ HDD+ LP GV              L+ ++N   G R+F RLR+G+G P    D  +++L + +   R+ I+ A+  G+EVL  +L+ G  E A H
Sbjct:   63 LLKPATFMNRSGQAVLALLNYYQIPLEHLLIAHDDLDLPPGVAKLKRAGGHGGHNGLRDIINRL-GRRDFLRLRLGVGHPGSGQDVVSYVLNRPSREDRQAIEAAIGAGLEVLPEVLA-GEMEKAMH 187          

HSP 2 Score: 36.1946 bits (82), Expect = 3.317e-19
Identity = 16/29 (55.17%), Postives = 19/29 (65.52%), Query Frame = -3
Query:  885 GNPGDKYKGTRPNVGFEMIDAFAESQGIS 971
            GNPG +Y  TR N GF  +DAFA   GI+
Sbjct:   12 GNPGTEYAQTRHNAGFWWLDAFASELGIN 40          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_MYCMM (Peptidyl-tRNA hydrolase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=pth PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.319e-19
Identity = 46/123 (37.40%), Postives = 69/123 (56.10%), Query Frame = -2
Query:  460 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 828
            V+LAKP+ YMN SG    PLA +Y +P   ++V HD++ L  G               L+SV     G ++F R+RIGIGRPPG+ DP  F+L+ F++  R  + T  ++  +  +LL+  GL
Sbjct:   60 VVLAKPRCYMNESGRQVAPLAKFYSVPPADLIVIHDELDLDFGRIRLKFGGGEGGHNGLRSVAAAL-GTKDFQRVRIGIGRPPGRKDPATFVLENFSSPERPEVPTICEQAADATELLVEIGL 181          

HSP 2 Score: 30.4166 bits (67), Expect = 3.319e-19
Identity = 13/27 (48.15%), Postives = 16/27 (59.26%), Query Frame = -3
Query:  891 GNPGDKYKGTRPNVGFEMIDAFAESQG 971
            GNPG+ Y  TR N+GF + D  A   G
Sbjct:   11 GNPGENYARTRHNLGFMVADLLAARLG 37          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_RHOE4 (Peptidyl-tRNA hydrolase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=pth PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.319e-19
Identity = 41/123 (33.33%), Postives = 72/123 (58.54%), Query Frame = -2
Query:  460 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 828
            V+L KP++YMNLSG +   LA ++ +    ++V HD++ L  G               L+S+ ++    +++ R R+GIGRPPG+MDP  ++L+ F++  R+ +D   +E  + ++LLL  GL
Sbjct:   61 VILGKPRSYMNLSGGAVAGLARFFSVDAANIIVVHDELDLDFGTIRLKLGGGEGGHNGLRSISSSLT-TKDYLRTRVGIGRPPGRMDPADYVLKPFSSTERKELDLVCEEAADAVELLLELGL 182          

HSP 2 Score: 31.5722 bits (70), Expect = 3.319e-19
Identity = 17/37 (45.95%), Postives = 21/37 (56.76%), Query Frame = -3
Query:  861 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKA 971
            GNPG +Y+ TR NVGF +    A   G   N VH K+
Sbjct:   12 GNPGPQYEKTRHNVGFMVAGTLAGRMGGKFN-VHKKS 47          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_MYCUA (Peptidyl-tRNA hydrolase OS=Mycobacterium ulcerans (strain Agy99) GN=pth PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.317e-19
Identity = 46/123 (37.40%), Postives = 68/123 (55.28%), Query Frame = -2
Query:  460 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 828
            V+LAKP+ YMN SG    PLA +Y +P   ++V HD++ L  G               L+SV     G + F R+RIGIGRPPG+ DP  F+L+ F++  R  + T  ++  +  +LL+  GL
Sbjct:   60 VVLAKPRCYMNESGRQVAPLAKFYSVPPADLIVIHDELDLDFGRIRLKFGGGEGGHNGLRSVAAAL-GTKNFQRVRIGIGRPPGRKDPATFVLENFSSPERPEVPTICEQAADATELLVEVGL 181          

HSP 2 Score: 30.4166 bits (67), Expect = 4.317e-19
Identity = 13/27 (48.15%), Postives = 16/27 (59.26%), Query Frame = -3
Query:  891 GNPGDKYKGTRPNVGFEMIDAFAESQG 971
            GNPG+ Y  TR N+GF + D  A   G
Sbjct:   11 GNPGENYARTRHNLGFMVADLLAARLG 37          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_PELCD (Peptidyl-tRNA hydrolase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=pth PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.317e-19
Identity = 42/126 (33.33%), Postives = 70/126 (55.56%), Query Frame = -2
Query:  436 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 813
            PQTYMN SG S         + +  V+V HD++ LP G               L+S+++   G R+F R+R+G+GRP GQ+D   ++L +F++  + ++D  L+  V+ L++LL KG  ++   FN
Sbjct:   61 PQTYMNRSGVSVVSACKSKGIAVEDVVVIHDEIDLPFGSIRIKVGGGHGGHNGLRSIVD-LLGCRDFLRVRMGVGRPQGQVDVAKYVLGQFSSTEKSQLDNVLENSVKALEVLLQKGAQQAMNEFN 185          

HSP 2 Score: 37.7354 bits (86), Expect = 4.317e-19
Identity = 16/42 (38.10%), Postives = 23/42 (54.76%), Query Frame = -3
Query:  846 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQG 971
            GNPG +Y  TR N+GF +   FA+  G+S+     +   G G
Sbjct:    8 GNPGPEYAATRHNIGFLVAQKFAQQMGVSLKRQAYQGIVGTG 49          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_MYCA9 (Peptidyl-tRNA hydrolase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=pth PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.608e-19
Identity = 43/128 (33.59%), Postives = 71/128 (55.47%), Query Frame = -2
Query:  460 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 843
            +G   V LAKP+T+MN SG     LA ++ +P   V+V HD++ L  G               L+SV  +  G +++ R+R+G+GRPPG+ DP AF+L+ F     +++    ++G +  +LL+  GL
Sbjct:   59 LGGRAVNLAKPRTFMNTSGPQVAALAKFFSVPPANVIVMHDELDLDFGTVRLKLGGGEGGHNGLRSVSQSL-GTKDYLRVRLGVGRPPGRKDPAAFVLENFAKAETDQVPLLCEQGADAAELLIRLGL 185          

HSP 2 Score: 30.4166 bits (67), Expect = 5.608e-19
Identity = 13/27 (48.15%), Postives = 15/27 (55.56%), Query Frame = -3
Query:  891 GNPGDKYKGTRPNVGFEMIDAFAESQG 971
            GNPG  Y  TR N+GF + D  A   G
Sbjct:   15 GNPGPNYAKTRHNLGFMVADLLAAKDG 41          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_CLOBK (Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Okra / Type B1) GN=pth PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.615e-19
Identity = 41/139 (29.50%), Postives = 72/139 (51.80%), Query Frame = -2
Query:  427 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQ 843
            +G+  ++L KP TYMNLSGES    A +YK+    ++V +DDM +  G               +K+++ +   +  F R+R+GIG+P   +    ++L KF+   RE ID  L    +    ++  G+TE+   +N ++
Sbjct:   51 IGNEKIILLKPSTYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHLNSD-IFPRVRVGIGQPDENV--VNYVLGKFSKDQREIIDKVLAMSAKACISIVEDGVTEAMNKYNGVK 186          

HSP 2 Score: 43.5134 bits (101), Expect = 5.615e-19
Identity = 18/42 (42.86%), Postives = 27/42 (64.29%), Query Frame = -3
Query:  846 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQG 971
            GN G +YK TR N+GF+++D  AE   I +N    K ++G+G
Sbjct:    8 GNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEG 49          
BLAST of CV887373 vs. ExPASy Swiss-Prot
Match: PTH_CLOK5 (Peptidyl-tRNA hydrolase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=pth PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.619e-19
Identity = 44/137 (32.12%), Postives = 73/137 (53.28%), Query Frame = -2
Query:  436 FVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 846
            F+G   V+L KP TYMNLSGES      +YK+  +R+++ +DD+ +  G               +K+++ N  G   F R++IGIG P   +D  +++L KF+   R  I+  L+  VE L+ ++  G+  +   FN
Sbjct:   50 FIGQNKVILLKPGTYMNLSGESVREAVNFYKIENDRMIIIYDDIDIDIGRFRIRHRGSAGGHNGIKNIILNL-GTDVFPRIKIGIGHP--NVDLVSYVLGKFSEDDRINIEKVLKTSVEALECIMDFGIEVAMNKFN 183          

HSP 2 Score: 40.0466 bits (92), Expect = 5.619e-19
Identity = 17/44 (38.64%), Postives = 26/44 (59.09%), Query Frame = -3
Query:  840 GNPGDKYKGTRPNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 971
            GN G KY  TR N+GF+ ID  ++   I++N    K  +G+G +
Sbjct:    8 GNIGVKYHRTRHNIGFDFIDLVSKKYNITLNREKFKGNYGEGFI 51          
The following BLAST results are available for this feature:
BLAST of CV887373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_ANASK3.317e-1934.56Peptidyl-tRNA hydrolase OS=Anaeromyxobacter sp. (s... [more]
PTH_ANAD23.317e-1934.56Peptidyl-tRNA hydrolase OS=Anaeromyxobacter dehalo... [more]
PTH_NITOC3.317e-1936.22Peptidyl-tRNA hydrolase OS=Nitrosococcus oceani (s... [more]
PTH_MYCMM3.319e-1937.40Peptidyl-tRNA hydrolase OS=Mycobacterium marinum (... [more]
PTH_RHOE43.319e-1933.33Peptidyl-tRNA hydrolase OS=Rhodococcus erythropoli... [more]
PTH_MYCUA4.317e-1937.40Peptidyl-tRNA hydrolase OS=Mycobacterium ulcerans ... [more]
PTH_PELCD4.317e-1933.33Peptidyl-tRNA hydrolase OS=Pelobacter carbinolicus... [more]
PTH_MYCA95.608e-1933.59Peptidyl-tRNA hydrolase OS=Mycobacterium abscessus... [more]
PTH_CLOBK5.615e-1929.50Peptidyl-tRNA hydrolase OS=Clostridium botulinum (... [more]
PTH_CLOK55.619e-1932.12Peptidyl-tRNA hydrolase OS=Clostridium kluyveri (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_030H06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887373 ID=CV887373; Name=CV887373; organism=Citrus sinensis; type=EST; length=973bp
TGCAATATACATAATATAATAAAGTACACCAAATTGCACAAAACATGATA
TTTATAGGCCAGCAACGAAAGCTATATCATAAATTCCTAGAGGATTGACT
GTTTTGCTTTCATAATGGTCAGACCTTCAGTTGGCTACGACCATGACACT
GGGAAAAGTCTCCAAATTTGAGAAGTGCTGATTTGCTGCAAAATGAACAG
ACAAAGCAATTCAGTTTGCTAATTGGGCTAAGCCATTCACTTACGTCGTT
AGAAGTATTCTCTCATTGGGATGGGTGGTTTCGCCTCCTCTCTCCTCGGT
GATTTTAAATATTTGTATGTATTATACAAATGCGGCCATGAAGAACCATT
CGGTGCTTTTGTGGTTGTCATCGAAGGTACCAATAGCTCATGCTGGCATG
TTTTGCAATCTTATGTGCTTGTATTTTTGTATGGTGTTGAAATGTCTAGC
ACTCTCTGTCAAGCCTTTAGATAAAAGCAGCTTCAGAACCTCAACCCCTT
CTTGCAAAGCAGTATCAATTCGCTCTCGAGCTATTGCATTAAACTTCTGC
AGCAAGAAAGCTTTAGGATCCATTTGACCAGGAGGCCTCCCAATACCAAT
TCTTAGCCGAGCAAATTCTCGGTTACCTCGAAAGTTGTTCATCACACTCT
TCAGCCCATTGTGGCCTCCATGACCTCCATTGTGGCGCAGACGAAGCACT
CCACAAGGTAAGCCCATGTCATCATGAAACACAAGAACACGATTAAGAGG
TAACTTATAATAAGCTGCAAGTGGTCCAGTAGATTCACCGCTCAGATTCA
TGTAAGTCTGTGGCTTTGCAAGGAGTACAGGGGCATCACCAACAAACCTT
GTCCGAAAGTAGCTTTGCAATGAACCGTGTTCATAGAAATCCCTTGTGAT
TCAGCAAATGCGTCGATCATCTCAAACCCCACATTGGGTCTAGTTCCTTT
GTATTTATCTCCCGGGTTACCCA
back to top