CV887372

Overview
NameCV887372
Unique NameCV887372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_HAEI8 (Peptidyl-tRNA hydrolase OS=Haemophilus influenzae (strain 86-028NP) GN=pth PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.109e-19
Identity = 38/128 (29.69%), Postives = 63/128 (49.22%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            V    V L  P T+MNLSG++ G LA++Y++    +LV HD++ LP G                K ++     N  F RLRIGIG P  +     ++L K +   R+ ++  L E  + ++++   G+
Sbjct:   55 VNGKEVRLLVPTTFMNLSGKAVGALASFYRIKPEEILVIHDELDLPAGTAKLKQGGGHGGHNGLKDIVAQLGNNNNFYRLRIGIGHPGHRDLVAGYVLNKPSPADRDALEKVLDEATDCVEIIFKDGM 182          

HSP 2 Score: 43.5134 bits (101), Expect = 2.109e-19
Identity = 19/36 (52.78%), Postives = 24/36 (66.67%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMN 437
            L VGLGNPG+KY  TRHN G  +I+  A    +S+N
Sbjct:    6 LIVGLGNPGEKYADTRHNAGEWLIERLARRFNVSLN 41          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_HAEIN (Peptidyl-tRNA hydrolase OS=Haemophilus influenzae GN=pth PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.109e-19
Identity = 38/128 (29.69%), Postives = 63/128 (49.22%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            V    V L  P T+MNLSG++ G LA++Y++    +LV HD++ LP G                K ++     N  F RLRIGIG P  +     ++L K +   R+ ++  L E  + ++++   G+
Sbjct:   55 VNGKEVRLLVPTTFMNLSGKAVGALASFYRIKPEEILVIHDELDLPPGTAKLKQGGGHGGHNGLKDIVAQLGNNNNFYRLRIGIGHPGHRDLVAGYVLNKPSPADRDALEKVLDEATDCVEMIFRDGM 182          

HSP 2 Score: 45.0542 bits (105), Expect = 2.109e-19
Identity = 20/36 (55.56%), Postives = 24/36 (66.67%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMN 437
            L VGLGNPGDKY  TRHN G  +I+  A    +S+N
Sbjct:    6 LIVGLGNPGDKYTDTRHNAGEWLIERLARRFNVSLN 41          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_GEOSL (Peptidyl-tRNA hydrolase OS=Geobacter sulfurreducens GN=pth PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 2.110e-19
Identity = 42/123 (34.15%), Postives = 62/123 (50.41%), Query Frame = 2
Query:  488 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            +LL KPQTYMNLSG S      ++KLPL   +V HDD+ +P G                +S++    G   F R+R+GIGRP    D   ++L  F+      +   L   +++L+ LL+ GL
Sbjct:   58 LLLLKPQTYMNLSGRSVAEALRFHKLPLCDTIVIHDDLDIPFGRVKVKEGGGHGGHNGLRSLVQEL-GGAGFVRVRVGIGRPV-HGDVVNYVLTNFSQDEMADLAHLLDGTLDLLESLLTAGL 178          

HSP 2 Score: 50.0618 bits (118), Expect = 2.110e-19
Identity = 23/47 (48.94%), Postives = 28/47 (59.57%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG 470
            L VGLGNPG KY  TRHN GF ++D  A + G S+        FG+G
Sbjct:    5 LIVGLGNPGPKYLWTRHNAGFMVLDRLAHAIGASVTRKSFSGVFGEG 51          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_CLOBM (Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=pth PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 2.111e-19
Identity = 36/113 (31.86%), Postives = 59/113 (52.21%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 811
            +G+  ++L KP TYMNLSGES    A +YK+    ++V +DDM +  G                K+++ +   +  F R+R+GIG+P   +    ++L KF+   RE I+  L
Sbjct:   51 IGNEKIILLKPSTYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHLNSD-IFPRVRVGIGQPDENV--VNYVLGKFSKDQREVIEKVL 160          

HSP 2 Score: 54.299 bits (129), Expect = 2.111e-19
Identity = 23/48 (47.92%), Postives = 33/48 (68.75%), Query Frame = 3
Query:  327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG 470
            +L VGLGN G +YK TRHN+GF+++D  AE   I +N    K ++G+G
Sbjct:    2 YLVVGLGNIGKEYKKTRHNIGFDVVDIVAEKYNIEINRQKFKGSYGEG 49          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_BACHD (Peptidyl-tRNA hydrolase OS=Bacillus halodurans GN=pth PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.113e-19
Identity = 35/121 (28.93%), Postives = 56/121 (46.28%), Query Frame = 2
Query:  488 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSK 850
            + L KPQT+MN SGES  P   YY + +  +LV +DD+ LP G                KS++ +  G  +F R+R+G+ RP         +L ++    ++ I  A+    E  +    K
Sbjct:   56 IFLLKPQTFMNRSGESVRPFLEYYNMEVEDLLVIYDDLDLPVGKIRLRQKGSAGGHNGMKSLIAHL-GTSDFKRIRVGVDRPAPGETVVQHVLGRYRPEEKDAISEAIDLSAEAAEAFTKK 175          

HSP 2 Score: 55.0694 bits (131), Expect = 2.113e-19
Identity = 24/47 (51.06%), Postives = 30/47 (63.83%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG 470
            L VGLGNPG KY GTRHNVGF+++DA A    I +        +G+G
Sbjct:    3 LIVGLGNPGAKYDGTRHNVGFDVVDAVARRLNIEIKQSKANGLYGEG 49          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_HAES2 (Peptidyl-tRNA hydrolase OS=Haemophilus somnus (strain 2336) GN=pth PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.743e-19
Identity = 37/118 (31.36%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  503 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            P T+MNLSG++   LA +Y++P  ++LV HD++ LP G+               K ++     N+ F RLRIGIG P  +    +++L K +    + ID  L E  + +++L+ +G+
Sbjct:   65 PTTFMNLSGKAVSALANFYRIPPEQILVLHDELDLPPGIAKLKQGGGHGGHNGLKDIIAQLANNKNFYRLRIGIGHPGDKNLVASYVLNKPSPTDWQLIDRTLDEATDCIEILMKEGI 182          

HSP 2 Score: 40.817 bits (94), Expect = 2.743e-19
Identity = 18/28 (64.29%), Postives = 20/28 (71.43%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFA 413
            L VGLGNPGDKY  TRHN G  +I+  A
Sbjct:    6 LIVGLGNPGDKYADTRHNAGEWLIERLA 33          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_CLOPS (Peptidyl-tRNA hydrolase OS=Clostridium perfringens (strain SM101 / Type A) GN=pth PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 2.746e-19
Identity = 37/114 (32.46%), Postives = 60/114 (52.63%), Query Frame = 2
Query:  470 FVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 811
            F+ +  V+L KP TYMNLSGES      +YKL  + ++V +DD+ L  G                KS++ N  G++ F R+++G+G+P   +     +L KF+   RE I+  +
Sbjct:   50 FIENKKVILLKPLTYMNLSGESIREFVNFYKLEDDEIIVVYDDISLDIGRLRIREKGSAGGHNGIKSIIQNLGGDK-FPRVKVGVGQPKDNL--VNHVLGKFSKEDREHIEKVI 160          

HSP 2 Score: 52.7582 bits (125), Expect = 2.746e-19
Identity = 23/49 (46.94%), Postives = 31/49 (63.27%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476
            L VGLGNPG +Y+ TRHN+GF++ID  A    I +N    K   G+G +
Sbjct:    3 LIVGLGNPGKQYEKTRHNIGFDVIDYMANKYNIDVNREKFKGICGEGFI 51          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_HAES1 (Peptidyl-tRNA hydrolase OS=Haemophilus somnus (strain 129Pt) GN=pth PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.567e-19
Identity = 36/118 (30.51%), Postives = 65/118 (55.08%), Query Frame = 2
Query:  503 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            P T+MNLSG++   LA +Y++P  ++LV HD++    G+               K ++     N+ F RLRIGIG P  +    +++L K +   R+ ID +L+E  + +++L+ +G+
Sbjct:   65 PTTFMNLSGKAVSALANFYRIPPEQILVLHDELDFSPGIAKIKQGGGHGGHNGLKDIIAQLANNKNFYRLRIGIGHPGDKNLVASYVLNKPSPTDRQLIDRSLEEATDCIEILMKEGI 182          

HSP 2 Score: 40.817 bits (94), Expect = 3.567e-19
Identity = 18/28 (64.29%), Postives = 20/28 (71.43%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFA 413
            L VGLGNPGDKY  TRHN G  +I+  A
Sbjct:    6 LIVGLGNPGDKYADTRHNAGEWLIERLA 33          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_HAEIG (Peptidyl-tRNA hydrolase OS=Haemophilus influenzae (strain PittGG) GN=pth PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.567e-19
Identity = 38/128 (29.69%), Postives = 62/128 (48.44%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            V    V L  P T+MNLSG++ G LA++Y++    +LV HD++ LP G                K ++     N  F RLRIGIG P  +     ++L K +   R  ++  L E  + ++++   G+
Sbjct:   55 VNGKEVRLLVPTTFMNLSGKAVGALASFYRIKPEEILVIHDELDLPAGTAKLKQGGGHGGHNGLKDIVAQLGNNNNFYRLRIGIGHPGHRDLVAGYVLNKPSPADRNALEKVLDEATDCVEMIFKDGM 182          

HSP 2 Score: 43.5134 bits (101), Expect = 3.567e-19
Identity = 19/36 (52.78%), Postives = 24/36 (66.67%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMN 437
            L VGLGNPG+KY  TRHN G  +I+  A    +S+N
Sbjct:    6 LIVGLGNPGEKYADTRHNAGEWLIERLARRFNVSLN 41          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_PELPD (Peptidyl-tRNA hydrolase OS=Pelobacter propionicus (strain DSM 2379) GN=pth PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.569e-19
Identity = 45/122 (36.89%), Postives = 64/122 (52.46%), Query Frame = 2
Query:  491 LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            +L KPQT+MNLSG S      +YKLPL++ +V HDD+ LP G                +S+M    G  +F RLR+GIGRP    D   ++L        E +   L   +E+L++LL +GL
Sbjct:   59 ILLKPQTFMNLSGRSVMQALQFYKLPLSQAIVVHDDLDLPFGTVRLKQGGGHGGHNGLRSIMEQL-GKGDFIRLRVGIGRPL-HGDTVNYVLGSMPPEQMELLPRILDGGLEMLEMLLDQGL 178          

HSP 2 Score: 40.817 bits (94), Expect = 3.569e-19
Identity = 16/35 (45.71%), Postives = 22/35 (62.86%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISM 434
            +  GLGNPG  Y+ TRHN GF  +D  A  + +S+
Sbjct:    5 IIAGLGNPGSHYQWTRHNAGFLFLDRLAHLENVSI 39          
The following BLAST results are available for this feature:
BLAST of CV887372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_HAEI82.109e-1929.69Peptidyl-tRNA hydrolase OS=Haemophilus influenzae ... [more]
PTH_HAEIN2.109e-1929.69Peptidyl-tRNA hydrolase OS=Haemophilus influenzae ... [more]
PTH_GEOSL2.110e-1934.15Peptidyl-tRNA hydrolase OS=Geobacter sulfurreducen... [more]
PTH_CLOBM2.111e-1931.86Peptidyl-tRNA hydrolase OS=Clostridium botulinum (... [more]
PTH_BACHD2.113e-1928.93Peptidyl-tRNA hydrolase OS=Bacillus halodurans GN=... [more]
PTH_HAES22.743e-1931.36Peptidyl-tRNA hydrolase OS=Haemophilus somnus (str... [more]
PTH_CLOPS2.746e-1932.46Peptidyl-tRNA hydrolase OS=Clostridium perfringens... [more]
PTH_HAES13.567e-1930.51Peptidyl-tRNA hydrolase OS=Haemophilus somnus (str... [more]
PTH_HAEIG3.567e-1929.69Peptidyl-tRNA hydrolase OS=Haemophilus influenzae ... [more]
PTH_PELPD3.569e-1936.89Peptidyl-tRNA hydrolase OS=Pelobacter propionicus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030H06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887372 ID=CV887372; Name=CV887372; organism=Citrus sinensis; type=EST; length=857bp
AGAGAACGACACATTCACTCACACACGTCCTCTCTGCAGCCACAGCCGCC
GCTTACAAACGCCCCTCTAACCCTAAGCTGACAAACGCCCACGCCCACGC
CCACGCTGCCGGCGCTGTCACTTTGGTTCAAGTGTGCCGACGCTGCAGCT
TCTAGCCGTTCTCGATTTGCTTCCTCGTTCCAGCTGCTGCGCTGCCTCCG
GCTTCGTTCGCCGTCGTCAGCCGTCGTCAGCCGCACAAGTGAAGTGGAAG
GAAACTGAGAACATTTGAGGAGATGCTTATTAACAGGTTTCTGAGGCGTG
GTTTCTGCACTGCTGTTGCTCGGCCATGGCTTTTTGTGGGGTTGGGTAAC
CCGGGAGATAAATACAAAGGAACTAGACACAATGTGGGGTTTGAGATGAT
CGACGCATTTGCTGAATCACAAGGGATTTCTATGAACACGGTTCATTGCA
AAGCTACTTTCGGACAAGGTTTGTTGGTGATGCCCCTGTACTCCTTGCAA
AGCCACAGACTTACATGAATCTGAGCGGTGAATCTACTGGACCACTTGCA
GCTTATTATAAGTTACCTCTTAATCGTGTTCTTGTGTTTCATGATGACAT
GGGCTTACCTTGTGGAGTGCTTCGTCTGCGCCACAATGGAGGTCATGGAG
GCCACAATGGGCTGAAGAGTGTGATGAACAACTTTCGAGGTAACCGAGAA
TTTGCTCGGCTAAGAATTGGTATTGGGAGGCCTCCTGGTCAAATGGATCC
TAAAGCTTTCTTGCTGCAGAAGTTTAATGCAATAGCTCGAGAGCGAATTG
ATACTGCTTTGCAAGAAAGGGTTGAGGTTCTGAAGCTGCTTTTATCTAAA
GGCTTGA
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