CV887371

Overview
NameCV887371
Unique NameCV887371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887371 vs. ExPASy Swiss-Prot
Match: LRC40_DANRE (Leucine-rich repeat-containing protein 40 OS=Danio rerio GN=lrrc40 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.363e-11
Identity = 49/143 (34.27%), Postives = 72/143 (50.35%), Query Frame = -2
Query:  397 IPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQ 825
            +P  IG+L++L  L LS N    E+P  +  L  LR L+LQ+N L  +IP +LG L N   LD+ NNHL+     L   +    +              +P  ++ + NL +L  S N+M  +IP  LA +  L  LYL HN+
Sbjct:  118 LPDSIGDLEQLQKLILSHNKLT-ELPSGVWRLTNLRCLHLQQN-LIEQIPRDLGQLVNLDELDLSNNHLIDIPESLANLQNLVKLDLSCNKLK-----SLPPAISQMKNLRMLDCSRNQME-SIPPVLAQMESLEQLYLRHNK 252          
BLAST of CV887371 vs. ExPASy Swiss-Prot
Match: Y4372_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.036e-11
Identity = 53/175 (30.29%), Postives = 74/175 (42.29%), Query Frame = -2
Query:  379 NKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXLTGGVPAQLANLTNLEILYLSHNKMSGTIP--------------LALAHIP------KLTYLYLDHNQFSGRIP 843
            ++L   IP+++G L  L  L LS N+F G +P    N  ELR+L L  N ++G IP  +G L N   L++ +N L G +                           P  LA+L NL ++ L +N  SG IP              L    +P       L YL +  NQ SG IP
Sbjct:   76 SQLLGSIPSDLGSLLTLQSLDLSNNSFNGPLPVSFFNARELRFLDLSSNMISGEIPSAIGDLHNLLTLNLSDNALAGKL---------------------------PTNLASLRNLTVVSLENNYFSGEIPGGWRVVEFLDLSSNLINGSLPPDFGGYSLQYLNVSFNQISGEIP 223          
BLAST of CV887371 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.036e-11
Identity = 43/122 (35.25%), Postives = 57/122 (46.72%), Query Frame = -2
Query:  451 EIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXLTGGVPAQLANLTNLEILYLSHNKMSGTIP 816
            E+G LK L +L L  NN  G IP  + NL  L  L L  N  +G IP  LG L   R L + NN L                           TG +P  L N+T L++L LS+N++SG++P
Sbjct:   88 ELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRLNNNSL---------------------------TGSIPMSLTNITTLQVLDLSNNRLSGSVP 182          
BLAST of CV887371 vs. ExPASy Swiss-Prot
Match: PGIP_VITVI (Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.179e-11
Identity = 55/180 (30.56%), Postives = 78/180 (43.33%), Query Frame = -2
Query:  376 NKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELI-RFEGSFPVXXXXXXXXXXLTGGVPAQLANLTNLEILYLSHNKMSGTI----------------------PLALAHIPK-LTYLYLDHNQFSGRIPD 843
            + L   IP  I +LK L  + LS+ N  G +P   + L  L YL L  N L+G IP  L +LPN   L +  NHL G I +   +F GS P           L+G +P       +  ++ LS NK+ G +                       L+    PK LT L L HN+ +G +P+
Sbjct:  108 SNLTGQIPPAIAKLKHLKMVRLSWTNLSGPVPAFFSELKNLTYLDLSFNNLSGPIPGSLSLLPNLGALHLDRNHLTGPIPDSFGKFAGSTP---GLHLSHNQLSGKIPYSFRGF-DPNVMDLSRNKLEGDLSIFFNANKSTQIVDFSRNLFQFDLSRVEFPKSLTSLDLSHNKIAGSLPE 283          
BLAST of CV887371 vs. ExPASy Swiss-Prot
Match: SERK5_ARATH (Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.764e-11
Identity = 46/139 (33.09%), Postives = 65/139 (46.76%), Query Frame = -2
Query:  379 LTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIP 795
            +T L L   N  GE+  ++A LP L+YL L  N +TG IP ELG L     LD+  N++                           +G +P+ L  L  L  L L +N +SG IP +L  +P L  L + +N+ SG IP
Sbjct:   72 VTRLDLGSANLSGELVPQLAQLPNLQYLELFNNNITGEIPEELGDLMELVSLDLFANNI---------------------------SGPIPSSLGKLGKLRFLRLYNNSLSGEIPRSLTALP-LDVLDISNNRLSGDIP 182          
BLAST of CV887371 vs. ExPASy Swiss-Prot
Match: Y5332_ARATH (Probable inactive receptor kinase At5g53320 OS=Arabidopsis thaliana GN=At5g53320 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.834e-11
Identity = 50/158 (31.65%), Postives = 67/158 (42.41%), Query Frame = -2
Query:  358 DVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXLTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQFSGRIPDAFYKHP 831
            D+  + I  L  L  L LS NN  G  P  +  L  L  L L  N  +G +P +L      + LD+ NN          RF GS                 +P+ +  LT L  L L++NK SG IP    HIP L  L L HN  +G +P +  + P
Sbjct:   80 DIELSIIARLSNLRFLILSSNNISGTFPTTLQALKNLTELKLDFNEFSGPLPSDLSSWERLQVLDLSNN----------RFNGS-----------------IPSSIGKLTLLHSLNLAYNKFSGEIPDL--HIPGLKLLNLAHNNLTGTVPQSLQRFP 208          
The following BLAST results are available for this feature:
BLAST of CV887371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
LRC40_DANRE1.363e-1134.27Leucine-rich repeat-containing protein 40 OS=Danio... [more]
Y4372_ARATH3.036e-1130.29Probable LRR receptor-like serine/threonine-protei... [more]
SERK1_ARATH3.036e-1135.25Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
PGIP_VITVI5.179e-1130.56Polygalacturonase inhibitor OS=Vitis vinifera GN=p... [more]
SERK5_ARATH6.764e-1133.09Somatic embryogenesis receptor kinase 5 OS=Arabido... [more]
Y5332_ARATH8.834e-1131.65Probable inactive receptor kinase At5g53320 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030H05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887371 ID=CV887371; Name=CV887371; organism=Citrus sinensis; type=EST; length=847bp
TTTTTTTTACTTTAACATACGGTATTGTATAATGCAAGACAATTACAAGA
CAGCATCTCTGTTACAGAACAAATCATTTAAAAAGCAAATGACATTCATG
ATAATGGCAAAAATATGTGCTAAATCAAAACGATCTACTTACCTAGACAA
TTGAATTATAAACATCCCCAGCCTTGACTTCCTTTGAAGATACAAGGTGA
TCAAATTGATATTTTTGGCATATAATTAAGAGAAACTATGCATCATTTTC
GACTAAACTAGAAATTCCGTGTCAGTAAGCTCAAGCACCTTGTGGATTCC
GATGGGATTTACACCCGGCCGGAATGCATTACCTTCAATGTACATTTCTT
TCAAGAAAGGATGCTTATAGAATGCATCTGGGATCCTCCCTGAAAATTGA
TTATGATCCAAGTACAGGTAAGTCAATTTAGGAATATGGGCAAGTGCTAA
TGGTATTGTTCCAGACATTTTGTTGTGGGATAAATACAATATTTCCAAAT
TAGTCAAATTTGCAAGCTGGGCAGGAACTCCTCCAGTCAAATAGTTGTTA
TTCAAGTACAGGTTGCGCAGAACTGGAAAGCTTCCTTCAAATCGGATGAG
TTCCCTAATGGTACCAACCAAGTGATTGTTACCAACATCCAAATGCCGGA
AGTTAGGTAAAATCCCTAATTCGGGTGGAATACGCCCAGTTAAACGGTTT
TCTTGAAGGTAGAGGTAGCGAAGCTCGGGTAGATTAGCAATCTCCTTAGG
AATTTCACCCTTAAAATTGTTGAAGCTCAGAGACAAATGCGTCAGTCTCT
TTAATTCTCCAATCTCTGCAGGAATGACATCTTGTAGTTTATTCCAC
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