CV887370

Overview
NameCV887370
Unique NameCV887370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887370 vs. ExPASy Swiss-Prot
Match: RKF1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.115e-13
Identity = 55/180 (30.56%), Postives = 87/180 (48.33%), Query Frame = 1
Query:  301 LTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHN 840
            LT LDL +N  +G IP ++G L  L+ L L  NKL   +PA +  L+ +T   ++     G IP  I N  +L  L +  + LTG IP  + +L N  +L + +  + G ++     + +              +G +P  L++L  LE L LS NK+ G IP + A    L ++ L  N
Sbjct:  171 LTYLDLESNAFSGTIPQELGNLVHLKKLLLSSNKLTGTLPASLARLQNMTDFRINDLQLSGTIPSYIQNWKQLERLEMIASGLTGPIPSVISVLSNLVNLRISD--IRGPVQPFPSLK-NVTGLTKIILKNCNISGQIPTYLSHLKELETLDLSFNKLVGGIP-SFAQAENLRFIILAGN 346          
BLAST of CV887370 vs. ExPASy Swiss-Prot
Match: Y2242_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g24230 OS=Arabidopsis thaliana GN=At2g24230 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.456e-13
Identity = 55/201 (27.36%), Postives = 95/201 (47.26%), Query Frame = 1
Query:  187 WSGVTCSTQGDYRVVTELEVYAVSIVGPFPI-AVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTI 786
            W G+ C ++ ++ ++  L    +S+ G  P   +  L  L  LDL NNK++  +P     L  L+ LNL +NK+     + +G   +L  L +S+NNF G IP+ + +L  LR L L  N     IP  L    +   +D+ +N L G++ +   F  +FP              G     A++ ++  L +S N+  G++
Sbjct:   57 WQGLFCDSKNEHVIM--LIASGMSLSGQIPDNTIGKLSKLQSLDLSNNKISA-LPSDFWSLNTLKNLNLSFNKISGSFSSNVGNFGQLELLDISYNNFSGAIPEAVDSLVSLRVLKLDHNGFQMSIPRGLLGCQSLVSIDLSSNQLEGSLPD--GFGSAFP-KLETLSLAGNKIHGRDTDFADMKSISFLNISGNQFDGSV 251          

HSP 2 Score: 67.781 bits (164), Expect = 8.834e-11
Identity = 44/116 (37.93%), Postives = 62/116 (53.45%), Query Frame = 1
Query:  286 TNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTI 633
            +N   L  LDL  N+L+G I   +  LK+L+ LNL WN+    +   I  L  L +L+LS  N  G IP+EI+ L +L  L +  N L G IP  +  + N   +DV  N+L G I
Sbjct:  279 SNWFSLVYLDLSENELSGVIK-NLTLLKKLKHLNLAWNRFNRGMFPRIEMLSGLEYLNLSNTNLSGHIPREISKLSDLSTLDVSGNHLAGHIP--ILSIKNLVAIDVSRNNLTGEI 391          
BLAST of CV887370 vs. ExPASy Swiss-Prot
Match: LRC40_XENTR (Leucine-rich repeat-containing protein 40 OS=Xenopus tropicalis GN=lrrc40 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.902e-13
Identity = 62/189 (32.80%), Postives = 93/189 (49.21%), Query Frame = 1
Query:  274 PIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHN 840
            P ++ +L  L  LD+ NN L   I   +G+L  L   NL  NKL   +P EIG++K L  L  + +N    +P  +A +  L  LYL++N+LT    PEL  L   + L VGNN +     E ++   S  V              +P +++ L  LE L LS+N + G++P  L  +P L  L L+ N
Sbjct:  167 PDSIGHLSILEELDVSNNCLRS-ISSSVGQLTGLVKFNLSSNKLT-ALPTEIGKMKNLKQLDCT-SNLLENVPASVAGMESLEQLYLRQNKLT--YLPELPFLTKLKELHVGNNQIQTLGPEHLQNLSSLSVLELRYNKLKV----LPEEISLLNGLERLDLSNNDL-GSLPCTLGSLPNLKSLQLEGN 345          
BLAST of CV887370 vs. ExPASy Swiss-Prot
Match: RLK90_ARATH (Probable inactive receptor kinase RLK902 OS=Arabidopsis thaliana GN=RLK902 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.484e-13
Identity = 66/214 (30.84%), Postives = 100/214 (46.73%), Query Frame = 1
Query:   28 SLICIFSLILTAAQSKT---LKRDVKALNEIKASLGWRVVYAWVXXXXXXXXXXXXWSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVT-NLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTI-RELIRFE 654
            +L   FS++L +    +   L  D  AL   ++++G R +  W             W+GV C    D   VT L +   ++ G  P  +  NL  L  L L  N LTG +P  +G    LR L L+ N+    IP  +  L  L  L+L+ N F GEI     NL  L+ LYL+ N+L+G +   L +  +    +V NN L G+I + L +F+
Sbjct:   11 NLSIFFSILLLSLPLPSIGDLAADKSALLSFRSAVGGRTLL-W----DVKQTSPCNWTGVLC----DGGRVTALRLPGETLSGHIPEGIFGNLTQLRTLSLRLNGLTGSLPLDLGSCSDLRRLYLQGNRFSGEIPEVLFSLSNLVRLNLAENEFSGEISSGFKNLTRLKTLYLENNKLSGSL---LDLDLSLDQFNVSNNLLNGSIPKSLQKFD 212          
BLAST of CV887370 vs. ExPASy Swiss-Prot
Match: Y5815_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g58150 OS=Arabidopsis thaliana GN=At5g58150 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.244e-13
Identity = 64/225 (28.44%), Postives = 97/225 (43.11%), Query Frame = 1
Query:  187 WSGVTCSTQGDYRVVTELEVYAVSIVGPFPI-AVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSG----TIPLALAHIPKLTYLYLDHNQF 846
            W GV      +   V  +    + + G  P   +  +  L  LDL  NK+T  +P  +  L  L  LNL  N++ + +P+ IG    L  L LSFN+  G+IP  I+NL  L  L L  N     +PPEL    +   +D+ +N L  ++   + F  +FP+            G +   L    N+E + LS N+  G     IP    +   L +L L  N F
Sbjct:   55 WPGVVVCDSSEN--VLHISASGLDLSGSIPDNTIGKMSKLQTLDLSGNKITS-LPSDLWSLSLLESLNLSSNRISEPLPSNIGNFMSLHTLDLSFNSISGKIPAAISNLVNLTTLKLHNNDFQFGVPPELVHCRSLLSIDLSSNRLNESLP--VGFGSAFPLLKSLNLSRNLFQGSLIGVLHE--NVETVDLSENRFDGHILQLIPGHKHNWSSLIHLDLSDNSF 272          
BLAST of CV887370 vs. ExPASy Swiss-Prot
Match: LRC40_XENLA (Leucine-rich repeat-containing protein 40 OS=Xenopus laevis GN=lrrc40 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.244e-13
Identity = 62/189 (32.80%), Postives = 93/189 (49.21%), Query Frame = 1
Query:  274 PIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHN 840
            P ++ +L  L  LD+ NN L   +   +G+L  L   NL  NKL   +P EIG++K L  L  + +N    +P  +A +  L  LYL++N+LT    PEL  L   + L VGNN +     E ++   S  V              +P +++ L  LE L LS+N + G++P  L  +P L  L LD N
Sbjct:  167 PDSIGHLSILEELDVSNNCLRS-VSSSVGQLTGLVKFNLSSNKLT-ALPTEIGKMKNLRQLDCT-SNLLENVPASVAGMESLEQLYLRQNKLT--YLPELPFLTKLKELHVGNNQIQTLGPEHLQNLSSLSVLELRYNKLKV----LPKEISLLKGLERLDLSNNDI-GSLPDTLGSLPNLKSLQLDGN 345          
BLAST of CV887370 vs. ExPASy Swiss-Prot
Match: Y5830_ARATH (Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.533e-13
Identity = 62/213 (29.11%), Postives = 90/213 (42.25%), Query Frame = 1
Query:  187 WSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQ-IGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTY 822
            W GVTC++ G         V+A+ + G                     L GPIPP  +G+L+ LRIL+LR N L   +P +I  L  L ++ L  NNF GE+P  ++   +L  L L  N  TG+IP     L     L + NN L G +  L                             +  +L  L LS+N ++G+IP AL   P  ++
Sbjct:   77 WVGVTCTSDGT-------SVHALRLPGI-------------------GLLGPIPPNTLGKLESLRILSLRSNLLSGNLPPDIHSLPSLDYIYLQHNNFSGEVPSFVSR--QLNILDLSFNSFTGKIPATFQNLKQLTGLSLQNNKLSGPVPNL-----------------------------DTVSLRRLNLSNNHLNGSIPSALGGFPSSSF 232          
BLAST of CV887370 vs. ExPASy Swiss-Prot
Match: Y5020_ARATH (Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 7.227e-13
Identity = 60/222 (27.03%), Postives = 93/222 (41.89%), Query Frame = 1
Query:  187 WSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGG---VPAQLANLTNLEILYLSHNKMSGTIPLALAHIPKLTYLYLDHNQ 843
            W G++C  +    +   L+   +S    F   ++ L  L  L L  N  +G + P +G +  L+ L+L  N     IP  I EL  L HL+LS N F+G  P    NL +LR L L +N + G +      L N   +D+  N   G +   +    S                G       + +  NLEI+ L +N+++G +P      P L  L L  N+
Sbjct:   64 WPGISCDPETGSIIAINLDRRGLSGELKFS-TLSGLTRLRNLSLSGNSFSGRVVPSLGGISSLQHLDLSDNGFYGPIPGRISELWSLNHLNLSSNKFEGGFPSGFRNLQQLRSLDLHKNEIWGDVGEIFTELKNVEFVDLSCNRFNGGLSLPMENISSISNTLRHLNLSHNALNGKFFSEESIGSFKNLEIVDLENNQINGELP-HFGSQPSLRILKLARNE 283          
BLAST of CV887370 vs. ExPASy Swiss-Prot
Match: RPKL_ARATH (Receptor protein kinase-like protein At4g34220 OS=Arabidopsis thaliana GN=At4g34220 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.610e-12
Identity = 55/200 (27.50%), Postives = 79/200 (39.50%), Query Frame = 1
Query:  187 WSGVTCSTQGDYRVVTELEVYAVSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIANLPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKMSGTI 786
            W+GVTC+  G                        ++  +T L L N  L G I P +  +  LRIL+L  N     +P  +     L  +SL  NN  G++PK + ++  L+ L L  N  TG IP  + +L N   + +  N   G I         F              G +P  L    +L  L LSHNK+ G I
Sbjct:   62 WTGVTCTELGKPNT-------------------PDMFRVTSLVLPNKHLLGSITPDLFSIPYLRILDLSSNFFNGSLPDSVFNATELQSISLGSNNLSGDLPKSVNSVTNLQLLNLSANAFTGEIPLNISLLKNLTVVSLSKNTFSGDI------PSGFEAAQILDLSSNLLNGSLPKDLGG-KSLHYLNLSHNKVLGEI 235          
BLAST of CV887370 vs. ExPASy Swiss-Prot
Match: GEFL_DICDI (Ras guanine nucleotide exchange factor L OS=Dictyostelium discoideum GN=gefL PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.746e-12
Identity = 58/169 (34.32%), Postives = 83/169 (49.11%), Query Frame = 1
Query:  271 FPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPAEIGELKRLTHLSLSFNNFKGEIPKEIAN-LPELRYLYLQENRLTGRIPPELGILPNFRHLDVGNNHLVGTIRELIRFEGSFPVXXXXXXXXXXXTGGVPAQLANLTNLEILYLSHNKM 774
            FP  +  L  LT L   NN L   IP QIG++  L+ L L  N+++  IP EI  LK LTHL  S +N    IP E+ N L +L +L+LQ N+L   IP E+G   +   L + NN +    + +   E                   +P++L N  +L+ LYL  NK+
Sbjct:  154 FPSHLCELQKLTTLGFSNNLLKS-IPTQIGQMIGLKKLILSGNQMES-IPMEISNLKSLTHLDCS-SNILSSIPNELGNKLSQLSFLFLQHNKLRS-IPDEIGQCQSLVSLRLNNNSITLLPQSIGELEN-----LQELYLQENRLNTLPSELGNCCSLKKLYLEFNKL 313          
The following BLAST results are available for this feature:
BLAST of CV887370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
RKF1_ARATH1.115e-1330.56Probable LRR receptor-like serine/threonine-protei... [more]
Y2242_ARATH1.456e-1327.36Probable LRR receptor-like serine/threonine-protei... [more]
LRC40_XENTR1.902e-1332.80Leucine-rich repeat-containing protein 40 OS=Xenop... [more]
RLK90_ARATH2.484e-1330.84Probable inactive receptor kinase RLK902 OS=Arabid... [more]
Y5815_ARATH3.244e-1328.44Probably inactive leucine-rich repeat receptor-lik... [more]
LRC40_XENLA3.244e-1332.80Leucine-rich repeat-containing protein 40 OS=Xenop... [more]
Y5830_ARATH5.533e-1329.11Probable inactive receptor kinase At5g58300 OS=Ara... [more]
Y5020_ARATH7.227e-1327.03Probable inactive receptor kinase At5g10020 OS=Ara... [more]
RPKL_ARATH1.610e-1227.50Receptor protein kinase-like protein At4g34220 OS=... [more]
GEFL_DICDI2.746e-1234.32Ras guanine nucleotide exchange factor L OS=Dictyo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030H05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887370 ID=CV887370; Name=CV887370; organism=Citrus sinensis; type=EST; length=846bp
CTGAAAATGGCGTGTCAGCGGACACTCTCTTTGATCTGCATTTTCTCTCT
GATACTCACTGCCGCTCAATCCAAAACGCTAAAGCGAGATGTGAAAGCTT
TAAATGAGATTAAAGCGTCGCTTGGATGGAGAGTGGTCTATGCATGGGTT
GGAGATGATCCCTGTGGAGATGGTGATCTACCGCCATGGTCTGGGGTCAC
ATGCTCCACTCAGGGAGACTACAGAGTGGTTACTGAACTGGAAGTTTATG
CAGTATCAATTGTTGGGCCTTTTCCAATTGCTGTTACCAATTTGTTGGAC
TTAACAAGACTGGATCTCCATAATAACAAGTTGACTGGGCCTATCCCTCC
TCAAATTGGAAGGCTAAAACGGCTGAGAATATTAAATTTGAGGTGGAATA
AACTACAAGATGTCATTCCTGCAGAGATTGGAGAATTAAAGAGACTGACG
CATTTGTCTCTGAGCTTCAACAATTTTAAGGGTGAAATTCCTAAGGAGAT
TGCTAATCTACCCGAGCTTCGCTACCTCTACCTTCAAGAAAACCGTTTAA
CTGGGCGTATTCCACCCGAATTAGGGATTTTACCTAACTTCCGGCATTTG
GATGTTGGTAACAATCACTTGGTTGGTACCATTAGGGAACTCATCCGATT
TGAAGGAAGCTTTCCAGTTCTGCGCAACCTGTACTTGAATAACAACTATT
TGACTGGAGGAGTTCCTGCCCAGCTTGCAAATTTGACTAATTTGGAAATA
TTGTATTTATCCCACAACAAAATGTCTGGAACAATACCATTAGCACTTGC
CCATATTCCTAAATTGACTTACCTGTACTTGGATCATAATCAATTT
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