CV887357

Overview
NameCV887357
Unique NameCV887357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length930
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887357 vs. ExPASy Swiss-Prot
Match: ERF3_SCHPO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Schizosaccharomyces pombe GN=sup35 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 9.550e-17
Identity = 55/184 (29.89%), Postives = 95/184 (51.63%), Query Frame = -1
Query:  379 IGTFPVGRVETGVLKPGMVVTFGPSGLTTEVKSVXMH-HEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 927
            +GT   G++E G +K    V   P   T EV ++     E +  ++ GD V   V+     D++ G+V +++K+ P      F +Q+ I+  P  +  GY+ V+  HT+   V F++L+ K+D+ + K  +K P F   G   + ++    P+ +E F DY  +GRF +RD   TVAVG +  +
Sbjct:  480 LGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRGDD-SDVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKS-KKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKI 660          
BLAST of CV887357 vs. ExPASy Swiss-Prot
Match: HBS1L_HUMAN (HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.379e-15
Identity = 47/186 (25.27%), Postives = 91/186 (48.92%), Query Frame = -1
Query:  373 GIGTFPVGRVETGVLKPGMVVTFGPSGLTTEVKSVXMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 930
            G G    G++E G ++ G  +   P   T  VK + +H E +  A  GD+V   +  + +  +  G +    K  P +    F ++++I N    I  G+  +L   T         L++ +++ +G+  +K+PKFL  G   +V++   +P+ +E + D+  LGRF +R    T+A GV+  +++
Sbjct:  500 GSGFCITGKIEAGYIQTGDRLLAMPPNETCTVKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPKV-PIKACTRFRARILIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKFLTKGQNALVELQTQRPIALELYKDFKELGRFMLRYGGSTIAAGVVTEIKE 684          
BLAST of CV887357 vs. ExPASy Swiss-Prot
Match: HBS1L_PONAB (HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.352e-15
Identity = 47/186 (25.27%), Postives = 91/186 (48.92%), Query Frame = -1
Query:  373 GIGTFPVGRVETGVLKPGMVVTFGPSGLTTEVKSVXMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 930
            G G    G++E G ++ G  +   P   T  VK + +H E +  A  GD+V   +  + +  +  G +    K  P +    F ++++I N    I  G+  +L   T         L++ +++ +G+  +K+PKFL  G   +V++   +P+ +E + D+  LGRF +R    T+A GV+  +++
Sbjct:  500 GSGFCITGKIEAGYIQTGDRLLAMPPNETCTVKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPKV-PIKACTRFRARILIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKFLTKGQNALVELQTQRPIALELYKDFKELGRFMLRYGGSTIAAGVVTEMKE 684          
BLAST of CV887357 vs. ExPASy Swiss-Prot
Match: HBS1L_RAT (HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.072e-15
Identity = 46/186 (24.73%), Postives = 90/186 (48.39%), Query Frame = -1
Query:  373 GIGTFPVGRVETGVLKPGMVVTFGPSGLTTEVKSVXMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 930
            G G    G++E G ++ G  +   P   T   K + +H E +  A  GD+V   +  + +  +  G +    K+ P +    F ++++I N    I  G+  +L   T         L++ +++ +G+  +K+PK L  G   +V++   +P+ +E + D+  LGRF +R    TVA GV+  +++
Sbjct:  495 GSGFCVTGKIEAGYVQTGDRLLAMPPNETCTAKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPKE-PIKACTRFRARILIFNIEVPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKELGRFMLRYGGSTVAAGVVTEIKE 679          
BLAST of CV887357 vs. ExPASy Swiss-Prot
Match: HBS1L_MOUSE (HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 3.072e-15
Identity = 45/186 (24.19%), Postives = 90/186 (48.39%), Query Frame = -1
Query:  373 GIGTFPVGRVETGVLKPGMVVTFGPSGLTTEVKSVXMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 930
            G G    G++E G ++ G  +   P   T   K + +H E +  A  GD+V   +  + +  +  G +    K+ P +    F +++++ N    I  G+  +L   T         L++ +++ +G+  +K+PK L  G   +V++   +P+ +E + D+  LGRF +R    TVA GV+  +++
Sbjct:  498 GSGFCVTGKIEAGYIQTGDRLLAMPPNETCTAKGITLHDEPVDWAAAGDHVNLTLVGMDIIKINVGCIFCGPKE-PIKACTRFRARILVFNIEVPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKELGRFMLRYGGSTVAAGVVTEIKE 682          
BLAST of CV887357 vs. ExPASy Swiss-Prot
Match: HBS1L_BOVIN (HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.939e-15
Identity = 45/185 (24.32%), Postives = 89/185 (48.11%), Query Frame = -1
Query:  376 GIGTFPVGRVETGVLKPGMVVTFGPSGLTTEVKSVXMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 930
            G G    G++E G ++ G  +   P   T   K + +H E +  A  GD+V   +  + +  +  G +    K+ P +    F ++++I N    I  G+  +L   T         L++ +++ +G+  +K+PK L  G   +V++   +P+ +E + D+  LGRF +R    T+A GV+  ++
Sbjct:  502 GSGFCVTGKIEAGYIQTGDRLLAMPPNETCTAKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCVPKE-PIKVCTRFRARILIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKELGRFMLRYSGSTIAAGVVTEIK 685          
BLAST of CV887357 vs. ExPASy Swiss-Prot
Match: EF1A_ENCCU (Elongation factor 1-alpha OS=Encephalitozoon cuniculi GN=TEF1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.991e-14
Identity = 46/191 (24.08%), Postives = 94/191 (49.21%), Query Frame = -1
Query:  367 GIGTFPVGRVETGVLKPGMVVTFGPSGLTTEVKSVXMHHEALQEALPGDNVGFNVKNVAVKDLKR---GFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 930
            G+G    GRVE G + P + +T  P+G+  E +SV +H++       G+N G  +K   + ++ +   G V S + ++ A        + I++  P  +  GY P ++    H   + +++++K+    GKE+ + P+ + NG+     ++  KP+V++    +  L +FA+ D    V +G +     +D
Sbjct:  292 GVGKIFTGRVEYGTITPNLKITIQPAGVVGETRSVEIHNKPRSMIPCGENCGVALKGGVIGEIDKVDAGHVISANDENKAVAYPGAKIRTIVVGRPKGLSPGYTPQINFGNCHSPGRIAKILSKV---VGKEVHENPENVANGENFTGIVVFQKPLVIDKMERFQNLAKFALMDSNGVVGIGNVMEPLTRD 479          
BLAST of CV887357 vs. ExPASy Swiss-Prot
Match: ERF3_DICDI (Eukaryotic peptide chain release factor GTP-binding subunit OS=Dictyostelium discoideum GN=erf3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.686e-13
Identity = 47/184 (25.54%), Postives = 88/184 (47.83%), Query Frame = -1
Query:  370 VGRVETGVLKPGMVVTFGPSGLTTEVKSVXMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQ---IGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 912
            +G+VE+G +  G  +   P     EV S+     + + A PG+N+   +K +   D  R        + P    +   + V I++ P +       ++ +   HT+   V    L+  ID ++  E++++P F K GDA   +++  + + +E F+  P L RF +RD  +T+A G + N+ KK
Sbjct:  363 IGKVESGTISVGQSIHIMPGKTKVEVISLTGDICSFKTARPGENITIALKGIEGDDSIRPGSILAEINRPVPVVSEIEAIVYILDMPEERRLFTPSFSAIFHAHTAVEDVTVKSLIATIDTKTSTEIKQKPTFCKVGDAVKCRLVLGRAVCLEEFTTNPQLARFTIRDSTKTIAFGKVINIGKK 546          
BLAST of CV887357 vs. ExPASy Swiss-Prot
Match: EFTU_BIGNA (Elongation factor Tu, chloroplastic OS=Bigelowiella natans GN=tufA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.831e-11
Identity = 54/188 (28.72%), Postives = 89/188 (47.34%), Query Frame = -1
Query:  379 GIGTFPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVXMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 930
            G GT   GRVE G +K G VV     GL    +T V  + M  + LQE++ GDNVG  ++ +   D++RG V   ++        +F +QV I+    + G  + P    +     V+ +++  KI+     E   E + +  GD   + +   +P+ +E         RFA+R+  +TV  GV+ NV
Sbjct:  233 GRGTVATGRVERGGVKIGDVVEI--VGLRETRSTTVTGLEMFQKMLQESIAGDNVGMLLRGIQKADIQRGMVV--AQPGSITPHVSFDAQVYILTK--EEGGRHTPFFKGYRPQFYVRTTDVTGKIESLKSDEDNTEMRMVVPGDRVTMSVELVQPIAIEKGM------RFAIREGGRTVGAGVVSNV 408          
The following BLAST results are available for this feature:
BLAST of CV887357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
ERF3_SCHPO9.550e-1729.89Eukaryotic peptide chain release factor GTP-bindin... [more]
HBS1L_HUMAN1.379e-1525.27HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV... [more]
HBS1L_PONAB2.352e-1525.27HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV... [more]
HBS1L_RAT3.072e-1524.73HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE... [more]
HBS1L_MOUSE3.072e-1524.19HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV... [more]
HBS1L_BOVIN8.939e-1524.32HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1[more]
EF1A_ENCCU1.991e-1424.08Elongation factor 1-alpha OS=Encephalitozoon cunic... [more]
ERF3_DICDI1.686e-1325.54Eukaryotic peptide chain release factor GTP-bindin... [more]
EFTU_BIGNA7.831e-1128.72Elongation factor Tu, chloroplastic OS=Bigelowiell... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030G09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887357 ID=CV887357; Name=CV887357; organism=Citrus sinensis; type=EST; length=930bp
CGAAAGTAGATATCAATTCCGCAGAAACAACACAATGACAAAACTTCTGA
GCCGATTCAGATGAAACCGAACCACCTCAAGTATCAATACAAACAAAGAC
CATAACTATTAATAAAATTGAGACTCCAGGTTAGAGCTGCGCCACCGCCT
GTCAAGCACCCAATTCTGGGAATCGGTACCCGACACCAAAGGCAACAAAC
TAAAACCTAAAAAGGAAAGCATGCATCGAACTATAACAGTACCAAAAATA
ACCAAGTTTGTATAACTACAATTATTAAAATAGACTCCATCTGCGGATAA
AGCAACATTAACCAACCCGATTCACTTCTTCTTGGCTGCAGACTTGGTGA
CCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAACA
GCAACAGTCTGACGCATGTCCCTAACGGCAAAACGACCAAGAGGTGGGTA
GTCAGAGAAGGTTTCAACAACCATGGGCTTGGTGGGAATCATCTTAACCA
TTCCAGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTG
CCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAACTTGACGGCAAT
GTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTGGC
CAGGGTGGTTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCCTG
GCCGGATCATCCTTCGAGTTGGAAGCAACAAAACCACGCTTGAGATCCTT
GACAGCAACGTTCTTCACGTTGAAGCCAACATTGTCACCCGGAAGGGCCT
CCTGCAGAGCTTCGTGGTGCATCTNCACAGACTTAACCTCAGTTGTCAAT
CCAGAGGGGCCAAATGTCACCACCATACCAGGCTTGAGGACACCGGTCTC
AACGCGACCCACTGGGAACGTTCCAATGCC
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