CV887346

Overview
NameCV887346
Unique NameCV887346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887346 vs. ExPASy Swiss-Prot
Match: RPS2_ARATH (Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.181e-26
Identity = 66/207 (31.88%), Postives = 113/207 (54.59%), Query Frame = 1
Query:    1 LSKEEAFNLFIDGVGSSILQVPTLNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNA---LNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCALYPEDFAIPKDELIDHWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESVEDGGCVKMHDLIRDMALRITSK----SPLFMVKVGLRLQEFPSEQEWK 600
            L K+ A+ LF   V    L   +  + +   +V +CG LPLA++T+  +M+  E   EW +A   L      ++ +N     VF  L+FSY  L+ + L+ CFLYCAL+PE+ +I  ++L+++W+ EGF+     V   Y +G+ ++  L   CLLE+ ++   VKMH+++R  AL + S+      L +V+  +   E P  + W+
Sbjct:  310 LEKKHAWELFCSKVWRKDLLESSSIRRLAEIIVSKCGGLPLALITLGGAMAHRETEEEWIHASEVLTRFPAEMKGMN----YVFALLKFSYDNLESDLLRSCFLYCALFPEEHSIEIEQLVEYWVGEGFLTSSHGVNTIY-KGYFLIGDLKAACLLETGDEKTQVKMHNVVRSFALWMASEQGTYKELILVEPSMGHTEAPKAENWR 511          
BLAST of CV887346 vs. ExPASy Swiss-Prot
Match: DRL18_ARATH (Probable disease resistance protein At1g61310 OS=Arabidopsis thaliana GN=At1g61310 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.566e-25
Identity = 71/216 (32.87%), Postives = 113/216 (52.31%), Query Frame = 1
Query:    1 LSKEEAFNLFIDGVGSSILQVPTLNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCALYPEDFAIPKDELIDHWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESVEDG-----------GCVKMHDLIRDMALRITS----KSPLFMVKVGLRLQEFPSEQEWKA 603
            L  E+A+ LF + VG + L    +   +  EV ++C  LPLA+  +  +M+ +  + EW+ A++ L       + ++ K+   L++SY  L DE ++ CFLYCAL+PED  I  + LID  I EGFI E + ++   ++G+ +L  L    LL  V               CV MHD++R+MAL I S    +   F+V+    L E P  ++W A
Sbjct:  311 LEPEDAWELFKNKVGDNTLSSDPVIVGLAREVAQKCRGLPLALNVIGETMASKTMVQEWEYAIDVLTRSAAEFSGMENKILPILKYSYDSLGDEHIKSCFLYCALFPEDGQIYTETLIDKLICEGFIGEDQVIKRARNKGYAMLGTLTRANLLTKVGTELANLLTKVSIYHCV-MHDVVREMALWIASDFGKQKENFVVQASAGLHEIPEVKDWGA 525          
BLAST of CV887346 vs. ExPASy Swiss-Prot
Match: DRL31_ARATH (Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.671e-25
Identity = 65/204 (31.86%), Postives = 114/204 (55.88%), Query Frame = 1
Query:   10 EEAFNLFIDGVGSSILQVPTLNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCALYPEDFAIPKDELIDHWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESVEDGGCVKMHDLIRDMALRITS------KSPLFMVKVGLRLQEFPSEQEWKA 603
            ++A++LF   +  ++   P +  E+   +  +C  LPLA+  +  +M+ ++ I EW +A+    G       ++  +   L+FSY  LK EK + CFL+ AL+PED+ I KD+LI++W+ +G I   K +  K   G+TI+  L    LL+  E    VKMHD++R+MAL I+S      +  + +V+   +L++ P  ++ KA
Sbjct:  314 DDAWDLFTRNMKETLESHPKI-PEVAKSIARKCNGLPLALNVIGETMARKKSIEEWHDAVGVFSG-------IEADILSILKFSYDDLKCEKTKSCFLFSALFPEDYEIGKDDLIEYWVGQGIILGSKGINYK---GYTIIGTLTRAYLLKESETKEKVKMHDVVREMALWISSGCGDQKQKNVLVVEANAQLRDIPKIEDQKA 506          
BLAST of CV887346 vs. ExPASy Swiss-Prot
Match: R13L4_ARATH (Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 6.595e-16
Identity = 50/159 (31.45%), Postives = 81/159 (50.94%), Query Frame = 1
Query:   76 KEIINEVVEECGCLPLAIVTVAASMSGEEEIY-EWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCALYPEDFAIPKDELIDHWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESVED--GGCV---KMHDLIRDMALRITSK 534
            +++  E+V +C  LPL I  V   +  ++ +Y EW+      +  LR        V   L+ SY  L    L+ C L  +LYPED  IPK +L+  WI EGF+   ++ ++  + G    + L N CL+E V+    G +   K+HD++RD+ + I  K
Sbjct:  345 EDVGKEIVTKCKGLPLTIKAVGGLLLCKDHVYHEWRRIAEHFQDELRGNTSETDNVMSSLQLSYDELPSH-LKSCILTLSLYPEDCVIPKQQLVHGWIGEGFV-MWRNGRSATESGEDCFSGLTNRCLIEVVDKTYSGTIITCKIHDMVRDLVIDIAKK 501          
BLAST of CV887346 vs. ExPASy Swiss-Prot
Match: RGA1_SOLBU (Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.275e-15
Identity = 54/180 (30.00%), Postives = 95/180 (52.78%), Query Frame = 1
Query:    1 LSKEEAFNLFIDGVGSSILQVPTLNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCALYPEDFAIPKDELIDHWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESVE-DGG--CVKMHDLIRDMALRITS 531
            LS E+ + LF+        ++      I  E+V++CG +PLA  T+   +  + E  EW++  +     + +L   ++ +   L  SYH L  + L+QCF+YCA++P+D  + K+ LI  W+A GF+    +++ + D G+ + N L      + +E + G    KMHDLI D+A  + S
Sbjct:  311 LSPEDCWFLFMQRAFGHQEEINPNLMAIGKEIVKKCGGVPLAAKTLGGILRFKREEREWEHVRDS---PIWNLPQDESSILPALRLSYHHLPLD-LRQCFVYCAVFPKDTKMAKENLIAFWMAHGFLLSKGNLELE-DVGNEVWNELYLRSFFQEIEVESGKTYFKMHDLIHDLATSLFS 485          
BLAST of CV887346 vs. ExPASy Swiss-Prot
Match: RGA3_SOLBU (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 9.523e-15
Identity = 56/182 (30.77%), Postives = 91/182 (50.00%), Query Frame = 1
Query:    1 LSKEEAFNLFIDGVGSSILQVPTLNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCALYPEDFAIPKDELIDHWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESVE---DGGCVKMHDLIRDMALRITSKS 537
            LS+E+ + LF         +      EI  E+V++CG +PLA  T+   +  + E  EW++  +     + +L   +  V   L  SYH L  + L+QCF YCA++P+D  I K+ LI  W+A  F+    +++ + D G+ + N L      + +E        KMHDLI D+A  + S S
Sbjct:  311 LSQEDCWLLFKQRAFCHQTETSPKLMEIGKEIVKKCGGVPLAAKTLGGLLRFKREESEWEHVRDS---EIWNLPQDENSVLPALRLSYHHLPLD-LRQCFAYCAVFPKDTKIEKEYLIALWMAHSFLLSKGNMELE-DVGNEVWNELYLRSFFQEIEVKSGKTYFKMHDLIHDLATSMFSAS 487          
BLAST of CV887346 vs. ExPASy Swiss-Prot
Match: R13L3_ARATH (Putative disease resistance RPP13-like protein 3 OS=Arabidopsis thaliana GN=RPP13L3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.244e-14
Identity = 58/178 (32.58%), Postives = 103/178 (57.87%), Query Frame = 1
Query:    1 LSKEEAFNLFIDGVGSSILQVPTLNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCALYPEDFAIPKDELIDHWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLL--ESVEDGGCV--KMHDLIRDMALR 522
            L+ EE++ LF     S+I +V    +    E+V++CG LPLAIV ++  +S  +   EW      L  RL+  +   + VF   + S+  ++ E L+ CFLY +++PED+ I  ++LI   +AEGFI+E +++  + D     ++ LV+  L+  E +E G  +  ++HDL+RD+A++
Sbjct:  327 LTFEESWTLFERKAFSNIEKVDEDLQRTGKEMVKKCGGLPLAIVVLSGLLS-RKRTNEWHEVCASLWRRLKDNSIHISTVF---DLSFKEMRHE-LKLCFLYFSVFPEDYEIKVEKLIHLLVAEGFIQEDEEMMME-DVARCYIDELVDRSLVKAERIERGKVMSCRIHDLLRDLAIK 498          
BLAST of CV887346 vs. ExPASy Swiss-Prot
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.122e-14
Identity = 48/152 (31.58%), Postives = 82/152 (53.95%), Query Frame = 1
Query:   91 EVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCALYPEDFAIPKDELIDHWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESVE---DGGCVKMHDLIRDMALRITSKS 537
            E+V++CG +PLA  T+   +  + E  EW++  +     + SL   ++ +   L  SYH L  + L+QCF YCA++P+D  + K+ LI  W+A GF+    +++ + D G+ + N L      + +E        K+HDLI D+A  + S S
Sbjct:  343 EIVKKCGGVPLAAKTLGGLLRFKREESEWEHVRDN---EIWSLPQDESSILPALRLSYHHLPLD-LRQCFAYCAVFPKDTKMIKENLITLWMAHGFLLSKGNLELE-DVGNEVWNELYLRSFFQEIEAKSGNTYFKIHDLIHDLATSLFSAS 489          
BLAST of CV887346 vs. ExPASy Swiss-Prot
Match: RPM1_ARATH (Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.771e-14
Identity = 56/183 (30.60%), Postives = 100/183 (54.64%), Query Frame = 1
Query:    1 LSKEEAFNLFID-GVGSSILQVPTLNKE-IINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCALYPEDFAIPKDELIDHWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESV-----EDGGCVKMHDLIRDMALRIT 528
            L ++EA+ LF +    +S+ Q  T N E I  ++VE C  LPLAI ++ + MS ++   EW+   + L   L   N+ + K+   + F         L++CFLYC+L+P ++ + +  LI  W+A+ F+E ++ V+A+ +   + LN LV   +L+ +           KMHD+I ++AL ++
Sbjct:  336 LKEDEAWVLFSNKAFPASLEQCRTQNLEPIARKLVERCQGLPLAIASLGSMMSTKKFESEWKKVYSTLNWELN--NNHELKIVRSIMFLSFNDLPYPLKRCFLYCSLFPVNYRMKRKRLIRMWMAQRFVEPIRGVKAE-EVADSYLNELVYRNMLQVILWNPFGRPKAFKMHDVIWEIALSVS 515          
BLAST of CV887346 vs. ExPASy Swiss-Prot
Match: R13L1_ARATH (Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.619e-14
Identity = 51/175 (29.14%), Postives = 93/175 (53.14%), Query Frame = 1
Query:    1 LSKEEAFNLFIDGVGSSILQVPTLNKEI---INEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCALYPEDFAIPKDELIDHWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESVEDGGCVKMHDLIRDMA 516
            LS  + ++LF+  V  +  Q P LN+EI      +V +C  LPLA+ T+   +  E ++ EW+  L+    R+  L    + +   L  SY+ L    L++CF YC+++P+  A  KD+++  W+AEGF+++ +  +   + G+   + L +  LL+  +      MHD I ++A
Sbjct:  334 LSDGDCWSLFMKTVFGN--QEPCLNREIGDLAERIVHKCRGLPLAVKTLGGVLRFEGKVIEWERVLSS---RIWDLPADKSNLLPVLRVSYYYLPAH-LKRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQQTRSSKNLEELGNEYFSELESRSLLQKTKTR--YIMHDFINELA 500          
The following BLAST results are available for this feature:
BLAST of CV887346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RPS2_ARATH9.181e-2631.88Disease resistance protein RPS2 OS=Arabidopsis tha... [more]
DRL18_ARATH1.566e-2532.87Probable disease resistance protein At1g61310 OS=A... [more]
DRL31_ARATH2.671e-2531.86Putative disease resistance protein At5g05400 OS=A... [more]
R13L4_ARATH6.595e-1631.45Disease resistance RPP13-like protein 4 OS=Arabido... [more]
RGA1_SOLBU4.275e-1530.00Putative disease resistance protein RGA1 OS=Solanu... [more]
RGA3_SOLBU9.523e-1530.77Putative disease resistance protein RGA3 OS=Solanu... [more]
R13L3_ARATH1.244e-1432.58Putative disease resistance RPP13-like protein 3 O... [more]
RGA4_SOLBU2.122e-1431.58Putative disease resistance protein RGA4 OS=Solanu... [more]
RPM1_ARATH2.771e-1430.60Disease resistance protein RPM1 OS=Arabidopsis tha... [more]
R13L1_ARATH3.619e-1429.14Putative disease resistance RPP13-like protein 1 O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030G04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887346 ID=CV887346; Name=CV887346; organism=Citrus sinensis; type=EST; length=605bp
CTTTCTAAAGAGGAGGCATTTAATTTGTTCATAGACGGAGTTGGTAGTAG
CATTTTGCAAGTTCCAACTTTGAATAAAGAAATCATAAACGAAGTTGTTG
AGGAATGTGGTTGTTTACCGCTGGCAATTGTAACTGTAGCTGCTTCCATG
AGCGGCGAAGAAGAAATTTATGAATGGCAAAATGCGCTCAATGAATTGCG
TGGACGGCTGAGAAGTTTGAATGACGTAGATACTAAAGTGTTTGGGCGAT
TAGAATTCAGTTACCATCGCTTGAAAGATGAAAAGCTCCAACAGTGCTTC
TTGTATTGTGCATTGTATCCTGAAGACTTTGCCATTCCAAAGGATGAGCT
GATAGATCATTGGATTGCAGAAGGGTTTATCGAAGAAGTGAAGGATGTCC
AAGCAAAATATGATAGAGGGCATACTATATTGAACAGGCTTGTAAATTGC
TGCTTATTGGAAAGCGTCGAAGATGGAGGTTGTGTGAAGATGCATGATCT
TATAAGAGACATGGCGTTACGCATTACAAGCAAGAGTCCTTTATTCATGG
TGAAAGTTGGCCTACGTTTGCAAGAATTTCCCAGTGAACAAGAATGGAAA
GCGAA
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