CV887346

Overview
NameCV887346
Unique NameCV887346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887346 vs. ExPASy Swiss-Prot
Match: RGA2_SOLBU (Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.913e-13
Identity = 52/180 (28.89%), Postives = 93/180 (51.67%), Query Frame = 1
Query:    1 LSKEEAFNLFIDGVGSSILQVPTLNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCALYPEDFAIPKDELIDHWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESVE--DGGC-VKMHDLIRDMALRITS 531
            LS+E+ + LF+        ++      I  E+V++ G +PLA  T+   +  + E   W++  +     + +L   ++ +   L  SYH+L  + L+QCF YCA++P+D  + K++LI  W+A GF+    +++ + D G  +   L      + +E  DG    KMHDLI D+A  + S
Sbjct:  312 LSQEDCWLLFMQRAFGHQEEINPNLVAIGKEIVKKSGGVPLAAKTLGGILCFKREERAWEHVRDS---PIWNLPQDESSILPALRLSYHQLPLD-LKQCFAYCAVFPKDAKMEKEKLISLWMAHGFLLSKGNMELE-DVGDEVWKELYLRSFFQEIEVKDGKTYFKMHDLIHDLATSLFS 486          
BLAST of CV887346 vs. ExPASy Swiss-Prot
Match: R13L2_ARATH (Putative disease resistance RPP13-like protein 2 OS=Arabidopsis thaliana GN=RPP13L2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.986e-12
Identity = 53/178 (29.78%), Postives = 96/178 (53.93%), Query Frame = 1
Query:    1 LSKEEAFNLFIDGVGSSILQVPTLNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCALYPEDFAIPKDELIDHWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESVEDGG----CVKMHDLIRDMALR 522
            L+ +E++NLF       IL+V    ++I  E+V++CG LP   V +A  MS ++   EW +  + LR     + D +  V    + S+  +  E L+ CFLY +++PED+ +  ++LI   +AEGFI+E +++  + D     +  LV   L+E V+         ++HDL+R+  ++
Sbjct:  322 LTFKESWNLFEKKAFRYILKVDQELQKIGKEMVQKCGGLPRTTVVLAGLMSRKKP-NEWNDVWSSLR-----VKDDNIHVSSLFDLSFKDMGHE-LKLCFLYLSVFPEDYEVDVEKLIQLLVAEGFIQEDEEMTME-DVARYYIEDLVYISLVEVVKRKKGKLMSFRIHDLVREFTIK 491          
BLAST of CV887346 vs. ExPASy Swiss-Prot
Match: RPP13_ARATH (Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.546e-12
Identity = 57/179 (31.84%), Postives = 99/179 (55.31%), Query Frame = 1
Query:    1 LSKEEAFNLFIDGVGSSILQVPTLNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLN-DVDTKVFGRLEFSYHRLKDEKLQQCFLYCALYPEDFAIPKDELIDHWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESV-EDGGCV---KMHDLIRDMALR 522
            L+ EE++ LF      +I +      +   E+V++C  LPL IV +A  +S +    EW +  N L  RL+  +  V   VF   + S+  L+ E  + CFLY +++PED+ I  ++LI   +AEGFI+  +++  + D     +  L++  LLE+V  + G V   ++HDL+RD+A++
Sbjct:  326 LTFEESWELFEQRAFRNIQRKDEDLLKTGKEMVQKCRGLPLCIVVLAGLLSRKTPS-EWNDVCNSLWRRLKDDSIHVAPIVF---DLSFKELRHES-KLCFLYLSIFPEDYEIDLEKLIHLLVAEGFIQGDEEMMME-DVARYYIEELIDRSLLEAVRRERGKVMSCRIHDLLRDVAIK 498          
BLAST of CV887346 vs. ExPASy Swiss-Prot
Match: RP8L2_ARATH (Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.546e-12
Identity = 46/152 (30.26%), Postives = 75/152 (49.34%), Query Frame = 1
Query:   91 EVVEECGCLPLAIVTVAASMSGEEEIYEWQ----NALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCALYPEDFAIPKDELIDHWIAEGFIEEVKDVQAKYDRGHTILNRLV--NCCLLESVEDGGCV---KMHDLIRDMAL 519
            E+V  CG LPLA+  +   ++ +  + EW+    N +  + G+    +D    V+  L  SY  L  + L+ CF Y A +PED+ I    L ++W+AEG I    D     D G + L  LV  N  ++E       +   +MHD++R++ L
Sbjct:  350 EMVTYCGGLPLAVKVLGGLLAKKHTVLEWKRVHSNIVTHIVGKSGLSDDNSNSVYRVLSLSYEDLPMQ-LKHCFFYLAHFPEDYKIDVKILFNYWVAEGIITPFHDGSTIQDTGESYLEELVRRNMVVVEESYLTSRIEYCQMHDMMREVCL 500          
BLAST of CV887346 vs. ExPASy Swiss-Prot
Match: ADR1_ARATH (Disease resistance protein ADR1 OS=Arabidopsis thaliana GN=ADR1 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.287e-11
Identity = 52/181 (28.73%), Postives = 83/181 (45.86%), Query Frame = 1
Query:    1 LSKEEAFNLFIDGVGSSILQVPTLNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCALYPEDFAIPKDELIDHWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESVEDG---GCVKMHDLIRDMALRITSK 534
            L K+EA +L               NK ++ +VV+EC  LPL++  + AS+  + E Y W+  +  L     +    +++VF  +E S   L D K++ CFL    +PED  IP D L   W+    I+E              L  +VN      V  G     V  HD++RD+AL ++++
Sbjct:  295 LKKDEAMSLLCLCAFEQKSPPSPFNKYLVKQVVDECKGLPLSLKVLGASLKNKPERY-WEGVVKRLLRGEAADETHESRVFAHMEESLENL-DPKIRDCFLDMGAFPEDKKIPLDLLTSVWVERHDIDEETAFSFVLRLADKNLLTIVNNPRFGDVHIGYYDVFVTQHDVLRDLALHMSNR 473          
BLAST of CV887346 vs. ExPASy Swiss-Prot
Match: DRL30_ARATH (Probable disease resistance protein At5g04720 OS=Arabidopsis thaliana GN=At5g04720 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.891e-11
Identity = 54/188 (28.72%), Postives = 92/188 (48.94%), Query Frame = 1
Query:    1 LSKEEAFNLFIDGVGSSILQVPTLNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCALYPEDFAIPKDELIDHWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESVEDGG-----------CVKMHDLIRDMALRITS 531
            L++ EA  LF   V +  L     ++ ++ +VV EC  LPL++  + AS+    E Y W+ A+  L     +    +++VF ++E +   L D K + CFL    +PED  IP D LI+  +    + +++D  A       ++  L N  LL  V+D              V  HD++RD+ALR+++
Sbjct:  318 LNEHEATALFCLSVFNQKLVPSGFSQSLVKQVVGECKGLPLSLKVIGASLKERPEKY-WEGAVERLSRGEPADETHESRVFAQIEATLENL-DPKTRDCFLVLGAFPEDKKIPLDVLINVLVE---LHDLEDATA-----FAVIVDLANRNLLTLVKDPRFGHMYTSYYDIFVTQHDVLRDVALRLSN 495          
The following BLAST results are available for this feature:
BLAST of CV887346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RGA2_SOLBU8.913e-1328.89Disease resistance protein RGA2 OS=Solanum bulboca... [more]
R13L2_ARATH1.986e-1229.78Putative disease resistance RPP13-like protein 2 O... [more]
RPP13_ARATH7.546e-1231.84Disease resistance protein RPP13 OS=Arabidopsis th... [more]
RP8L2_ARATH7.546e-1230.26Probable disease resistance RPP8-like protein 2 OS... [more]
ADR1_ARATH1.287e-1128.73Disease resistance protein ADR1 OS=Arabidopsis tha... [more]
DRL30_ARATH4.891e-1128.72Probable disease resistance protein At5g04720 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030G04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887346 ID=CV887346; Name=CV887346; organism=Citrus sinensis; type=EST; length=605bp
CTTTCTAAAGAGGAGGCATTTAATTTGTTCATAGACGGAGTTGGTAGTAG
CATTTTGCAAGTTCCAACTTTGAATAAAGAAATCATAAACGAAGTTGTTG
AGGAATGTGGTTGTTTACCGCTGGCAATTGTAACTGTAGCTGCTTCCATG
AGCGGCGAAGAAGAAATTTATGAATGGCAAAATGCGCTCAATGAATTGCG
TGGACGGCTGAGAAGTTTGAATGACGTAGATACTAAAGTGTTTGGGCGAT
TAGAATTCAGTTACCATCGCTTGAAAGATGAAAAGCTCCAACAGTGCTTC
TTGTATTGTGCATTGTATCCTGAAGACTTTGCCATTCCAAAGGATGAGCT
GATAGATCATTGGATTGCAGAAGGGTTTATCGAAGAAGTGAAGGATGTCC
AAGCAAAATATGATAGAGGGCATACTATATTGAACAGGCTTGTAAATTGC
TGCTTATTGGAAAGCGTCGAAGATGGAGGTTGTGTGAAGATGCATGATCT
TATAAGAGACATGGCGTTACGCATTACAAGCAAGAGTCCTTTATTCATGG
TGAAAGTTGGCCTACGTTTGCAAGAATTTCCCAGTGAACAAGAATGGAAA
GCGAA
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