CV887343

Overview
NameCV887343
Unique NameCV887343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887343 vs. ExPASy Swiss-Prot
Match: PSMA_ARCFU (Proteasome subunit alpha OS=Archaeoglobus fulgidus GN=psmA PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.920e-46
Identity = 104/229 (45.41%), Postives = 149/229 (65.07%), Query Frame = -1
Query:  215 FDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGQETIKLAIRALLEVVESG--GKNIEVA-VMTREKGLKQLDEAEIDAMV 889
            +DRAITVFSPDG LFQVEYA EAV++G  A+G++  + ++L  +K+   KL ++ ++ KI  +D HI  A +GL ADARVLI+RARIE Q +RLT ++P+TV+ + + I   +Q+YTQ GGVRPFG+S LI G D    VP LY+TDPSG    +KA A G   N++ EF EK Y+ + S  + + L + A+   +ES    +NIEV  V   ++  K++   E+   V
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDE---VPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYV 233          
BLAST of CV887343 vs. ExPASy Swiss-Prot
Match: PSMA_METJA (Proteasome subunit alpha OS=Methanocaldococcus jannaschii GN=psmA PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 9.528e-46
Identity = 101/228 (44.30%), Postives = 149/228 (65.35%), Query Frame = -1
Query:  215 FDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGQETIKLAIRALLEVVES-GGKNIEVAVMT-REKGLKQLDEAEIDAMV 889
            +DRAITVFSP+G L+QVEYA EAVR+G  A+G+   D +VL V+++ T KL   RS+ KI  +D+H+A A +GL ADARVLI+RAR+E Q +RLT  + +++E + + I  ++Q YTQ GGVRPFG+S LI G D       L++TDPSG    +KA A G     + E LEK Y+ + +  E ++LAI AL +  E    +N++V ++T ++   K++   EI  ++
Sbjct:    9 YDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGID--KNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANEDIKPENVDVCIITVKDAQFKKIPVEEIKKLI 234          
BLAST of CV887343 vs. ExPASy Swiss-Prot
Match: PSMA_METS5 (Proteasome subunit alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=psmA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.772e-45
Identity = 94/221 (42.53%), Postives = 146/221 (66.06%), Query Frame = -1
Query:  242 FDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGLKQL 889
            +DRAIT+FSPDG L+QV+YA EAV+KG   +GV+  + +V+  EKK   +L D  S+ K+  LD+H+  + AGL +D R+LI+ AR     HRL  ++P++++Y+T+ I+ ++Q YTQ GGVRPFG++ ++ G D   GV  L+ T+PSG F  ++A A G+   +  ++LEKNYKE  S +ETI LA+ AL   ++ G K    N+E+   T+E   +++
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTTLGVKTKNAVVILGEKKKASQLLDVDSIEKVFLLDDHVGCSFAGLASDGRILIDYARNSSLQHRLVYDEPISIDYLTKLISDVKQMYTQHGGVRPFGVALIVGGVD--RGVTKLFMTEPSGQFMPYQAVAIGQGGYNATDYLEKNYKEDLSVEETILLALNALKVTLKPGEKLGPGNVEIGFATKEGQFRKM 228          
BLAST of CV887343 vs. ExPASy Swiss-Prot
Match: PSMA_SULSO (Proteasome subunit alpha OS=Sulfolobus solfataricus GN=psmA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.621e-45
Identity = 93/218 (42.66%), Postives = 143/218 (65.60%), Query Frame = -1
Query:  251 FDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 889
            +DRAIT+FSPDG L+QV+YA EAV+KG  A+G++   ++V+  EK+    L D  S+ K+  +D+H+  + AGL +D RVLI+ AR     HRL  ++PV+++Y+T+ +A ++Q YTQ GGVRPFG++ +I G D    VP L+ T+PSG +  ++A A G+   +  EFLEKNYKE  + +ETI LA++AL   ++   K     +E+   + + GL
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSSVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLFMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLNVEETILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225          
BLAST of CV887343 vs. ExPASy Swiss-Prot
Match: PSMA_METS3 (Proteasome subunit alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=psmA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.621e-45
Identity = 97/231 (41.99%), Postives = 148/231 (64.07%), Query Frame = -1
Query:  215 ARFDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVV--ESGGKNIEVAVM-TREKGLKQLDEAEIDAMV 895
            A +DRAITVFSPDG LFQVEYA EAV++G  ++G++ ++ IVL V+K++T  L ++ S+ KI  +D HI  A +GL ADAR L+ RAR+E Q +++T  +P+ V+ +++ +  + Q YTQ+GGVRPFG S LI+G   Y G+  L++TDPSG    +KA A G   ++  +  E  YK+     E I LA+ A+ E    E+   N+E+AV+   E+   +L + E+   +
Sbjct:    7 AGYDRAITVFSPDGRLFQVEYAREAVKRGTTSIGIKCSEGIVLAVDKRTTSNLVEATSIEKIFKIDEHIGAATSGLVADARALVERARVEAQINKITYSEPIRVDSLSKKLCDMLQMYTQNGGVRPFG-SALIIG-GVYDGICKLFETDPSGALIEYKATAIGSGRSAAMDIFEDQYKDDMNLNEAINLALTAINEATEHETTANNVEIAVIKCGEEVYTKLSQEEVQTFI 235          
BLAST of CV887343 vs. ExPASy Swiss-Prot
Match: PSMA_SULIY (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 8.066e-45
Identity = 93/218 (42.66%), Postives = 142/218 (65.14%), Query Frame = -1
Query:  251 FDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 889
            +DRAIT+FSPDG L+QV+YA EAV+KG  A+G++    +V+  EK+    L D  S+ K+  +D+H+  + AGL +D RVLI+ AR     HRL  ++PV+++Y+T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLEKNYKE  + ++TI LA++AL   ++   K     +E+   + + GL
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225          
BLAST of CV887343 vs. ExPASy Swiss-Prot
Match: PSMA_SULIN (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=psmA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 8.066e-45
Identity = 93/218 (42.66%), Postives = 142/218 (65.14%), Query Frame = -1
Query:  251 FDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 889
            +DRAIT+FSPDG L+QV+YA EAV+KG  A+G++    +V+  EK+    L D  S+ K+  +D+H+  + AGL +D RVLI+ AR     HRL  ++PV+++Y+T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLEKNYKE  + ++TI LA++AL   ++   K     +E+   + + GL
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225          
BLAST of CV887343 vs. ExPASy Swiss-Prot
Match: PSMA_SULIM (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 8.066e-45
Identity = 93/218 (42.66%), Postives = 142/218 (65.14%), Query Frame = -1
Query:  251 FDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 889
            +DRAIT+FSPDG L+QV+YA EAV+KG  A+G++    +V+  EK+    L D  S+ K+  +D+H+  + AGL +D RVLI+ AR     HRL  ++PV+++Y+T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLEKNYKE  + ++TI LA++AL   ++   K     +E+   + + GL
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225          
BLAST of CV887343 vs. ExPASy Swiss-Prot
Match: PSMA_SULIL (Proteasome subunit alpha OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 8.066e-45
Identity = 93/218 (42.66%), Postives = 142/218 (65.14%), Query Frame = -1
Query:  251 FDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 889
            +DRAIT+FSPDG L+QV+YA EAV+KG  A+G++    +V+  EK+    L D  S+ K+  +D+H+  + AGL +D RVLI+ AR     HRL  ++PV+++Y+T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLEKNYKE  + ++TI LA++AL   ++   K     +E+   + + GL
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225          
BLAST of CV887343 vs. ExPASy Swiss-Prot
Match: PSMA_SULIK (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=psmA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 8.066e-45
Identity = 93/218 (42.66%), Postives = 142/218 (65.14%), Query Frame = -1
Query:  251 FDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 889
            +DRAIT+FSPDG L+QV+YA EAV+KG  A+G++    +V+  EK+    L D  S+ K+  +D+H+  + AGL +D RVLI+ AR     HRL  ++PV+++Y+T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLEKNYKE  + ++TI LA++AL   ++   K     +E+   + + GL
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225          
The following BLAST results are available for this feature:
BLAST of CV887343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSMA_ARCFU1.920e-4645.41Proteasome subunit alpha OS=Archaeoglobus fulgidus... [more]
PSMA_METJA9.528e-4644.30Proteasome subunit alpha OS=Methanocaldococcus jan... [more]
PSMA_METS52.772e-4542.53Proteasome subunit alpha OS=Metallosphaera sedula ... [more]
PSMA_SULSO3.621e-4542.66Proteasome subunit alpha OS=Sulfolobus solfataricu... [more]
PSMA_METS33.621e-4541.99Proteasome subunit alpha OS=Methanobrevibacter smi... [more]
PSMA_SULIY8.066e-4542.66Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIN8.066e-4542.66Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIM8.066e-4542.66Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIL8.066e-4542.66Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIK8.066e-4542.66Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030G02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887343 ID=CV887343; Name=CV887343; organism=Citrus sinensis; type=EST; length=910bp
TTTTTAGCTGGCATAATCTGGTGCTCTGTCATATCTTTTGAATGCAAATC
TAAAAGCATATAAAACTTAACCACAAAAAAAGCATACTAAAATTCTGAAA
GGTGAAAAACAACAGGCAATGGAAAAAACAGAAGCCAGAACTAAAAACTC
ATGTTTCCTTGGGAGGTCCCTTCTTTGCAGCCTCAGCGGCGGCCTTCTCT
GCTTCAATCTCGGCTACCATGGCATCAATTTCAGCTTCATCAAGCTGCTT
CAGACCCTTCTCCCTTGTCATCACAGCAACTTCTATGTTTTTGCCCCCAC
TCTCAACAACCTCAAGTAATGCCCGAATTGCAAGCTTTATAGTTTCTTGC
CCGGAAGTTTCCTTATAGTTTTTCTCCAGAAACTCCCTCATTGAATTAGA
GTTTCTCCCAGTTGCATTAGCTTTCCAGGCAGAAAATGTCCCAGAAGGAT
CTGTCTGATATAGTGACGGCACGCCAGTGTATGGATCAAAGCCCACAATC
AGAGTAGAAAGACCAAATGGTCTCACACCACCGCTTTGTGTGTACTTCTG
CTGGAGACCTGCAATGTATCGAGTGATGTACTCAACAGTTACTGGGTCCT
CAACAGTCAGCCTGTGGCTCTGACATTCTATTCGAGCCCTGTTTATCAGG
ACACGAGCATCTGCTTTAAGTCCAGCACAGGCCAATGCAATATGATTATC
CAAGCTGACAATCTTCCTCACTGATCTAGAATCCTGAAGCTTGACAGTGG
ATTTCTTTTCGACGCCAAGAACGATGGTGTCGGTGCCGCGCACGCCGACG
GCGGCGTTGCCTTTGCGTACGGCCTCTAGTGCGTATTCCACTTGGAACAG
GTGGCCATCCGGTGAAAATACAGTGATTGCTCGATCGAATCTCGCCATGT
CAAATCTCTC
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