CV887343

Overview
NameCV887343
Unique NameCV887343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887343 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.389e-43
Identity = 99/229 (43.23%), Postives = 144/229 (62.88%), Query Frame = -1
Query:  215 FDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVMTRE-KGLKQLDEAEIDAMV 889
            +DRAITVFSPDG LFQVEYA EAV++G  AVG++  D +VL V+K+ T +L ++ S+ KI  +D+HI  A +GL ADAR L++RAR+E Q +R++ ++ + VE I++ I   +Q YTQ GGVRP+G + LI G D     P L++TDPSG    +KA A G   N++ E  E +Y+E       I L + AL +  E       +EV V++ E K  ++L   E++  V
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVD--DNKPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNIDAAILLGMDALYKAAEGKFDAGTLEVGVVSLEDKKFRKLGPEEVENYV 235          
BLAST of CV887343 vs. ExPASy Swiss-Prot
Match: PSMA_SULTO (Proteasome subunit alpha OS=Sulfolobus tokodaii GN=psmA PE=3 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 5.780e-43
Identity = 93/218 (42.66%), Postives = 138/218 (63.30%), Query Frame = -1
Query:  251 FDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 889
            +DRAIT+FSPDG L+QV+YA EAV+KG   +GV+    +VL  EK+   +L D  S+ K+  LD+H+  + AGL +D R+LI+ AR +   HRL  ++P+ ++Y+T+ ++ ++Q YTQ GGVRPFG++ +I G D     P L  T+PSG F  + A A G+   +  E+ EKNY+E  + Q+TI L IRAL   ++ G K    NIEV     + G+
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTTLGVKTKAGVVLIGEKRKATQLLDVDSIEKVFILDDHVGCSFAGLASDGRILIDYARSQALQHRLIYDEPINIDYLTKLVSDVKQMYTQHGGVRPFGVALIIGGID-RGKTPKLLMTEPSGQFMPYYAVAIGQGGYTATEYFEKNYREDLNMQDTILLGIRALASTLKPGEKLAPSNIEVGFADVDSGM 226          
BLAST of CV887343 vs. ExPASy Swiss-Prot
Match: PSMA_NATPD (Proteasome subunit alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=psmA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.780e-43
Identity = 97/228 (42.54%), Postives = 142/228 (62.28%), Query Frame = -1
Query:  221 FDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQET-IKLAIRALLEVVESG----GKNIEVAVMTREKGLKQLDEAEIDA 889
            +DR IT+FSPDG L+QVEYA EAV++G A++G+R  D +VL V+K+    L +  SV KI   D+HI +A AG  ADAR LI+ AR + Q ++L  ++P+ VE +T+ +    Q+YTQ GG RPFG++ +I G +   G P LY+TDPSGT   W+A A G +   ++E+LE++Y E+   E  I LA+ AL  V +      G  +    +  + G  QL + EI+A
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGIRTEDGVVLVVDKRIRSPLMERTSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYDEPIGVETLTKAVTDHIQQYTQVGGARPFGVALIIGGIE--DGEPRLYETDPSGTPYEWQALAVGADRGDIQEYLEEHYSESLDTEAGIGLALEALASVNDDSLTPEGIGLATVTVDDDDGFSQLSDEEIEA 235          
BLAST of CV887343 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.682e-42
Identity = 99/227 (43.61%), Postives = 145/227 (63.88%), Query Frame = -1
Query:  227 ARFDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVE--SGGKNIEVAVM-TREKGLKQLDEAEI 895
            A +DRAITVFSPDG LFQVEYA EAV++G  ++GV+  + IVL V+K+ T KL + +S+ KI  +D HI  A +GL ADAR +I +AR+E Q +R+T  +P+ VE + + I  ++Q YTQ GGVRPFG + LI+G     G   L++TDPSG    +KA A G    +  E  EK Y +     + I+LA+ A+ E  E  +  +++E+AV+   +K  ++L + EI
Sbjct:    7 AGYDRAITVFSPDGRLFQVEYAREAVKRGTTSLGVKSKEGIVLVVDKRPTSKLVEPKSIEKIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMYTQHGGVRPFG-TALIIGGVNGRGC-RLFETDPSGALIEYKATAIGAGRPAAMEEFEKKYSDDMNLNQAIELALDAVYEATEGKTTPESVEIAVIEAADKKYRRLPDDEI 231          
BLAST of CV887343 vs. ExPASy Swiss-Prot
Match: PSMA_HALWD (Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=psmA PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.347e-42
Identity = 102/231 (44.16%), Postives = 142/231 (61.47%), Query Frame = -1
Query:  215 FDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNY-KETSGQETIKLAIRALL-----EVVESGGKNIEVAVMTREKGLKQLDEAEIDAMV 889
            +DR IT+FSPDG L+QVEYA EAV++G A+VG+R  D IVL  +K+S   L +  SV KI   D+H+ +A AG  ADAR LI+ AR + Q +RL   +PV +E +T+ +    Q+YTQ GG RPFG++ LI G +   G P LY+TDPSGT   WKA + G + + ++E LE+NY +E S  E + LA+R +      E+  +G     VA  T E    +L   EI A +
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGIRTPDGIVLAADKRSRSPLMEPTSVEKIHKTDDHVGIASAGHVADARQLIDFARRQAQVNRLRYGEPVGIETLTKNVTDNIQQYTQVGGARPFGVALLIGGIE--DGSPRLYETDPSGTPYEWKAVSIGADRSDLQEHLEENYTEELSLDEGVGLALRTIAISNDDELTAAGVDVATVASDTEE--FIELTNDEISAYI 236          
BLAST of CV887343 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSJ (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. japonica GN=Os06g0167600 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.347e-42
Identity = 85/200 (42.50%), Postives = 133/200 (66.50%), Query Frame = -1
Query:  299 RFDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES 892
            R+D   T+FSP+G L+QVEYA+EA+    +A+GV   D +VL  EKK T KL Q SRS  K+  +D+H+A A AG+ +DA +L+N AR+  Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+++Y++  + +E + LA++ L + ++S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDS 202          
BLAST of CV887343 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSI (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. indica GN=OsI_021067 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.347e-42
Identity = 85/200 (42.50%), Postives = 133/200 (66.50%), Query Frame = -1
Query:  299 RFDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES 892
            R+D   T+FSP+G L+QVEYA+EA+    +A+GV   D +VL  EKK T KL Q SRS  K+  +D+H+A A AG+ +DA +L+N AR+  Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+++Y++  + +E + LA++ L + ++S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDS 202          
BLAST of CV887343 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSJ (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. japonica GN=PAC1 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.347e-42
Identity = 85/200 (42.50%), Postives = 133/200 (66.50%), Query Frame = -1
Query:  299 RFDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES 892
            R+D   T+FSP+G L+QVEYA+EA+    +A+GV   D +VL  EKK T KL Q SRS  K+  +D+H+A A AG+ +DA +L+N AR+  Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+++Y++  + +E + LA++ L + ++S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDS 202          
BLAST of CV887343 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSI (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. indica GN=OsI_021120 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 8.347e-42
Identity = 85/200 (42.50%), Postives = 133/200 (66.50%), Query Frame = -1
Query:  299 RFDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES 892
            R+D   T+FSP+G L+QVEYA+EA+    +A+GV   D +VL  EKK T KL Q SRS  K+  +D+H+A A AG+ +DA +L+N AR+  Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+++Y++  + +E + LA++ L + ++S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDS 202          
BLAST of CV887343 vs. ExPASy Swiss-Prot
Match: PSMA2_HALMA (Proteasome subunit alpha 2 OS=Haloarcula marismortui GN=psmA2 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.090e-41
Identity = 95/223 (42.60%), Postives = 140/223 (62.78%), Query Frame = -1
Query:  224 FDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQE-TIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLDEAEID 889
            +DR IT+FSPDG L+QVEYA EAV++G A+VGVR  D +V+  ++ +   L +  S+ KI  +D+H+ +A AG  ADAR LI+ AR + Q +RL  ++P +VE +T+ I    Q+YTQ+GG RPFG++ L+ G +   G P L++TDPSGT   W+A A G +   ++ FLE+ Y E    E  I+LA+RAL  V E G     V + T +   +Q ++   D
Sbjct:    9 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGVRTEDGVVIAADRHARSPLIERDSIEKIHEIDSHVGVASAGHVADARQLIDVARRQSQVNRLRYDEPASVESLTKEITDYIQQYTQTGGARPFGVALLVAGIE--DGEPRLFETDPSGTPYEWQAVAIGGSREDIQTFLEEEYAEGMDLEGGIELALRALASVNEDGLDATGVDIATIDVESEQFEKLAED 229          
The following BLAST results are available for this feature:
BLAST of CV887343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSMA_METMA3.389e-4343.23Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSMA_SULTO5.780e-4342.66Proteasome subunit alpha OS=Sulfolobus tokodaii GN... [more]
PSMA_NATPD5.780e-4342.54Proteasome subunit alpha OS=Natronomonas pharaonis... [more]
PSMA_METTH1.682e-4243.61Proteasome subunit alpha OS=Methanobacterium therm... [more]
PSMA_HALWD8.347e-4244.16Proteasome subunit alpha OS=Haloquadratum walsbyi ... [more]
PSA4B_ORYSJ8.347e-4242.50Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4B_ORYSI8.347e-4242.50Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4A_ORYSJ8.347e-4242.50Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSA4A_ORYSI8.347e-4242.50Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSMA2_HALMA1.090e-4142.60Proteasome subunit alpha 2 OS=Haloarcula marismort... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030G02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887343 ID=CV887343; Name=CV887343; organism=Citrus sinensis; type=EST; length=910bp
TTTTTAGCTGGCATAATCTGGTGCTCTGTCATATCTTTTGAATGCAAATC
TAAAAGCATATAAAACTTAACCACAAAAAAAGCATACTAAAATTCTGAAA
GGTGAAAAACAACAGGCAATGGAAAAAACAGAAGCCAGAACTAAAAACTC
ATGTTTCCTTGGGAGGTCCCTTCTTTGCAGCCTCAGCGGCGGCCTTCTCT
GCTTCAATCTCGGCTACCATGGCATCAATTTCAGCTTCATCAAGCTGCTT
CAGACCCTTCTCCCTTGTCATCACAGCAACTTCTATGTTTTTGCCCCCAC
TCTCAACAACCTCAAGTAATGCCCGAATTGCAAGCTTTATAGTTTCTTGC
CCGGAAGTTTCCTTATAGTTTTTCTCCAGAAACTCCCTCATTGAATTAGA
GTTTCTCCCAGTTGCATTAGCTTTCCAGGCAGAAAATGTCCCAGAAGGAT
CTGTCTGATATAGTGACGGCACGCCAGTGTATGGATCAAAGCCCACAATC
AGAGTAGAAAGACCAAATGGTCTCACACCACCGCTTTGTGTGTACTTCTG
CTGGAGACCTGCAATGTATCGAGTGATGTACTCAACAGTTACTGGGTCCT
CAACAGTCAGCCTGTGGCTCTGACATTCTATTCGAGCCCTGTTTATCAGG
ACACGAGCATCTGCTTTAAGTCCAGCACAGGCCAATGCAATATGATTATC
CAAGCTGACAATCTTCCTCACTGATCTAGAATCCTGAAGCTTGACAGTGG
ATTTCTTTTCGACGCCAAGAACGATGGTGTCGGTGCCGCGCACGCCGACG
GCGGCGTTGCCTTTGCGTACGGCCTCTAGTGCGTATTCCACTTGGAACAG
GTGGCCATCCGGTGAAAATACAGTGATTGCTCGATCGAATCTCGCCATGT
CAAATCTCTC
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