CV887322

Overview
NameCV887322
Unique NameCV887322
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887322 vs. ExPASy Swiss-Prot
Match: CAN_HAEIN (Carbonic anhydrase 2 OS=Haemophilus influenzae GN=can PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.924e-12
Identity = 57/168 (33.93%), Postives = 80/168 (47.62%), Query Frame = -2
Query:  231 QSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNT------LALKGAHYDFVNG 716
            Q+P +L   CSDSRV    + N +PGE F+ RN+AN V   D    S     ++YAV  LK+E+I++ GH+ CGGI   M+  D G      I  W+        K       LS E++     K  +NV+      Y   R S+VK+       L+L G  YD  +G
Sbjct:   33 QTPHYLWIGCSDSRVPAEKLTNLEPGELFVHRNVANQVIHTDFNCLS----VVQYAVDVLKIEHIIICGHTNCGGIHAAMADKDLG-----LINNWLLHIRDIWFKHGHLLGKLSPEKRADMLTK--INVA---EQVYNLGRTSIVKSAWERGQKLSLHGWVYDVNDG 186          
BLAST of CV887322 vs. ExPASy Swiss-Prot
Match: CAN_SHIFL (Carbonic anhydrase 2 OS=Shigella flexneri GN=can PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = -2
Query:  459 QSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNG 716
            Q P+FL   CSDSRV    +   +PGE F+ RN+AN+V   D    S     ++YAV  L+VE+I++ GH  CGG++  +  P+ G
Sbjct:   33 QKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLS----VVQYAVDVLEVEHIIICGHYGCGGVQAAVENPELG 114          
BLAST of CV887322 vs. ExPASy Swiss-Prot
Match: CAN_ECOLI (Carbonic anhydrase 2 OS=Escherichia coli (strain K12) GN=can PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = -2
Query:  459 QSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNG 716
            Q P+FL   CSDSRV    +   +PGE F+ RN+AN+V   D    S     ++YAV  L+VE+I++ GH  CGG++  +  P+ G
Sbjct:   33 QKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLS----VVQYAVDVLEVEHIIICGHYGCGGVQAAVENPELG 114          
The following BLAST results are available for this feature:
BLAST of CV887322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CAN_HAEIN7.924e-1233.93Carbonic anhydrase 2 OS=Haemophilus influenzae GN=... [more]
CAN_SHIFL5.136e-1140.70Carbonic anhydrase 2 OS=Shigella flexneri GN=can P... [more]
CAN_ECOLI5.136e-1140.70Carbonic anhydrase 2 OS=Escherichia coli (strain K... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_030F02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887322 ID=CV887322; Name=CV887322; organism=Citrus sinensis; type=EST; length=720bp
ATTTCATTACAACTGGAATAAAGGAAAACACGGTACAATATTTGAGCCAA
ATACAAGAAGCTAAAATGCTTATTTGTTTCTTGAGGACATGTACAAGTAC
AAACGCACAATACAATATGAGCTTTAATGTGAAATATCATCGAAGCTAGG
GCAACCGGGTATTATGCATCAGGAGCTCAGACAGATACAGAAGGTAAAAT
GTTGAAGTCAAGATCCCAAAGCTCAAATTTTCCATTGACGAAATCATAAT
GTGCTCCCTTCAGCGCCAGGGTGTTCTTCACCACGCTCTCTCTCACAAAT
GGGTATGTCAATAGGTTTCCAAGGGACACATTCACAGCCTCCTTTTCACA
GTTCTTGCATTGCTCCTCAAAACTCAAATCATTGCATTCTTTTTTCACCT
TGGACTTGGCAGATGAACAGATTTTGACCCACTCTTCTATGAAATCACTC
GCAGTGGTCCCATTATCAGGGATAGACATGAGCCCCTTTATACCACCACA
GCAACTGTGTCCAATGACTACAATATTCTCCACCTTCAGATGTAGCACCG
CATATTCAATGGCTGCACCTGCTCCAGAGTATTTTTTCTGGTCATATGGA
GGGACCATATTGGCAATGTTTCGAACCATAAACGCCTCTCCTGGTTGAAA
ATTGAGGATATGGGATGGACATACTCGAGAGTCTGAGCATGCAAATACCA
GAAACTTGGGGCTTTGGCCT
back to top