CV887304

Overview
NameCV887304
Unique NameCV887304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME7_ARATH (Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.304e-58
Identity = 106/176 (60.23%), Postives = 126/176 (71.59%), Query Frame = -1
Query:  252 RQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 779
            RQFYRECD+YGTVDFIFGNAAVV Q C +Y RKPM  Q N ITAQ R DPNQNTG SI +C++  A D  +S  ++ TYLGRPWK YSR VYM +Y+   ++P GW EWNGDFAL TLYY EY N+GPGS   +RV WPGY VI S T+A+ FTV+     + W+  TGV +  GL
Sbjct:  403 RQFYRECDVYGTVDFIFGNAAVVFQNCNLYPRKPMPNQFNAITAQGRSDPNQNTGTSIQNCTIKPADDLVSSNYTVKTYLGRPWKEYSRTVYMQSYIDGFVEPVGWREWNGDFALSTLYYAEYNNTGPGSNTTNRVTWPGYHVINS-TDAANFTVTGLFIEADWIWKTGVPYTSGL 577          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME47_ARATH (Probable pectinesterase/pectinesterase inhibitor 47 OS=Arabidopsis thaliana GN=PME47 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.702e-58
Identity = 105/176 (59.66%), Postives = 125/176 (71.02%), Query Frame = -1
Query:  252 RQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 779
            RQFYRECDIYGT+DFIFGNAA + Q C IYARKPMA QKN +TA  R DPNQ TGISI +C++ AAPD  A   S  T+LGRPWK YSR VY+ +Y+ D +QP GWLEWNG   LDT+ YGEY N GPG+    RV+W GY ++ +  +A  FTV  F  G +WLP T + F GGL
Sbjct:  446 RQFYRECDIYGTIDFIFGNAAAIFQNCNIYARKPMANQKNAVTAHGRTDPNQKTGISIINCTIGAAPDLAADPKSTMTFLGRPWKPYSRTVYIQSYISDVVQPVGWLEWNGTTGLDTISYGEYDNFGPGADTSKRVQWSGYSLL-NLVQAMNFTVYNFTLGDTWLPQTDIPFYGGL 620          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME21_SOLLC (Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.702e-58
Identity = 105/176 (59.66%), Postives = 125/176 (71.02%), Query Frame = -1
Query:  252 RQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 779
            RQFYR+  + GT+DFIFGNAAVV QKC + ARKP   Q+N +TAQ R DPNQ TG SI  C + A+PD +      PTYLGRPWK YSR V M +Y+G  I P GW EW+GDFAL TLYYGE+MN+GPG+    RV+WPGY VIT   EA  FTV++ I G SWL ST VA++ GL
Sbjct:  373 RQFYRDSYVTGTIDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCDIIASPDLKPVVKEFPTYLGRPWKKYSRTVVMESYLGGLIDPSGWAEWHGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAEAMSFTVAKLIQGGSWLRSTDVAYVDGL 548          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME_ACTDE (Pectinesterase OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.953e-58
Identity = 107/170 (62.94%), Postives = 120/170 (70.59%), Query Frame = -1
Query:  270 RQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGV 779
            RQFY ECD+YGT+DFIFGNAA VLQKC +YARKP   QKN  TAQ R DPNQNTGISI +C + AA D      S  TYLGRPWK YSR V++L+ M   I P GWLEW+GDFAL TLYY EY N+GPGS    RV WPGY V T+ TE  +FTV  FI GS WL S  +
Sbjct:  145 RQFYSECDVYGTIDFIFGNAAAVLQKCNLYARKPNENQKNIFTAQGRDDPNQNTGISILNCKVAAAADLIPVLSSFKTYLGRPWKEYSRTVFLLSQMESLIDPAGWLEWSGDFALTTLYYREYKNTGPGSNTTARVTWPGYAVTTNETEVIQFTVGNFIQGSQWLTSYNI 314          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME1_SOLLC (Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5)

HSP 1 Score: 224.557 bits (571), Expect = 4.953e-58
Identity = 105/176 (59.66%), Postives = 126/176 (71.59%), Query Frame = -1
Query:  252 RQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 779
            RQFYR+  + GTVDFIFGNAAVV QKC + ARKP   Q+N +TAQ R DPNQ TG SI  C++ A+ D +      PTYLGRPWK YSR V M +Y+G  I P GW EW+GDFAL TLYYGE+MN+GPG+    RV+WPGY VIT   +A  FTV++ I G SWL STGVA++ GL
Sbjct:  369 RQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGL 544          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME22_SOLLC (Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2.2 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.469e-58
Identity = 104/176 (59.09%), Postives = 125/176 (71.02%), Query Frame = -1
Query:  252 RQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 779
            RQFYR+  + GT+DFIFGNAAVV QKC + ARKP   Q+N +TAQ R DPNQ TG SI  C++ A+ D +      PTYLGRPWK YSR V M +Y+G  I P GW EW+GDFAL TLYYGE+MN+GPG+    RV+WPGY  IT   EA  FTV++ I G SWL STGVA++ GL
Sbjct:  373 RQFYRDSYVTGTIDFIFGNAAVVFQKCKLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKKYSRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHCITDPAEAMPFTVAKLIQGGSWLRSTGVAYVDGL 548          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME1_FICAW (Pectinesterase/pectinesterase inhibitor OS=Ficus awkeotsang PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.441e-57
Identity = 105/176 (59.66%), Postives = 126/176 (71.59%), Query Frame = -1
Query:  252 RQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 779
            RQFYR+ +I GTVDFIFGNAAVV Q C +  RK M  Q+NTITAQ R DPNQNTG SI +C ++A+ D +  + +  +YLGRPWK YSR V M +Y+ D I P GWLEW+ DFAL TL+YGEY N GPGS    RV+WPGY VITS   A +FTV++ I G SWL STGV +  GL
Sbjct:  368 RQFYRDRNITGTVDFIFGNAAVVFQNCNLIPRKQMKGQENTITAQGRTDPNQNTGTSIQNCEIFASADLEPVEDTFKSYLGRPWKEYSRTVVMESYISDVIDPAGWLEWDRDFALKTLFYGEYRNGGPGSGTSERVKWPGYHVITSPEVAEQFTVAELIQGGSWLGSTGVDYTAGL 543          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME44_ARATH (Probable pectinesterase/pectinesterase inhibitor 44 OS=Arabidopsis thaliana GN=PME44 PE=2 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 7.153e-57
Identity = 104/178 (58.43%), Postives = 126/178 (70.79%), Query Frame = -1
Query:  246 RQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGLSV 779
            RQFYREC I GTVDFIFG+  VV Q C I A++ +  QKNTITAQ RKD NQ +G SI   ++ A  D      +  TYLGRPWKLYSR V++   M D ++P GWLEWN DFALDTL+YGE+MN GPGS +  RV+WPGY V  ++ +A+ FTVSQFI G+ WLPSTGV F  GL +
Sbjct:  348 RQFYRECTITGTVDFIFGDGTVVFQNCQILAKRGLPNQKNTITAQGRKDVNQPSGFSIQFSNISADADLVPYLNTTRTYLGRPWKLYSRTVFIRNNMSDVVRPEGWLEWNADFALDTLFYGEFMNYGPGSGLSSRVKWPGYHVFNNSDQANNFTVSQFIKGNLWLPSTGVTFSDGLYI 525          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME36_ARATH (Probable pectinesterase/pectinesterase inhibitor 36 OS=Arabidopsis thaliana GN=PME36 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 9.342e-57
Identity = 101/176 (57.39%), Postives = 126/176 (71.59%), Query Frame = -1
Query:  252 RQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 779
            RQFYR+  IYGT+DFIFG+AA V Q C I+ R+PM  Q N ITAQ R DP+ N+GISI    + AAP+F+A KG   +YLGRPWK YSR V++ T + + I PRGW EW+G +AL TLYYGE+MN+G G+  G RV WPG+ V+    EAS FTVS+FI G SW+P TGV F  G+
Sbjct:  344 RQFYRDRHIYGTIDFIFGDAAAVFQNCDIFVRRPMDHQGNMITAQGRDDPHTNSGISIQHSRIRAAPEFEAVKGRFKSYLGRPWKKYSRTVFLKTDIDELIDPRGWREWSGSYALSTLYYGEFMNTGAGAGTGRRVNWPGFHVLRGEEEASPFTVSRFIQGDSWIPITGVPFSAGV 519          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME22_ARATH (Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana GN=PME22 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 9.342e-57
Identity = 107/177 (60.45%), Postives = 122/177 (68.93%), Query Frame = -1
Query:  249 RQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGLS 779
            RQFYR+C+IYGT+DFIFGN A VLQ C IY R P+ +QK TITAQ RK PNQNTG  I +  + A           PTYLGRPWKLYSR VYM TYM   +QPRGWLEW G+FALDTL+YGEY N GPG     RV+WPGY ++   T A  FTV  FI G  WLP+TGV F  GL+
Sbjct:  376 RQFYRDCEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPNQNTGFVIQNSYVLATQ---------PTYLGRPWKLYSRTVYMNTYMSQLVQPRGWLEWFGNFALDTLWYGEYNNIGPGWRSSGRVKWPGYHIMDKRT-ALSFTVGSFIDGRRWLPATGVTFTAGLA 542          
The following BLAST results are available for this feature:
BLAST of CV887304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PME7_ARATH1.304e-5860.23Probable pectinesterase/pectinesterase inhibitor 7... [more]
PME47_ARATH1.702e-5859.66Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME21_SOLLC1.702e-5859.66Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2... [more]
PME_ACTDE4.953e-5862.94Pectinesterase OS=Actinidia deliciosa PE=1 SV=1[more]
PME1_SOLLC4.953e-5859.66Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9... [more]
PME22_SOLLC6.469e-5859.09Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2... [more]
PME1_FICAW1.441e-5759.66Pectinesterase/pectinesterase inhibitor OS=Ficus a... [more]
PME44_ARATH7.153e-5758.43Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME36_ARATH9.342e-5757.39Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME22_ARATH9.342e-5760.45Putative pectinesterase/pectinesterase inhibitor 2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030E03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887304 ID=CV887304; Name=CV887304; organism=Citrus sinensis; type=EST; length=782bp
TTTTTTTTTTTTTTTTTCCATTTTAAAGACCGGTCACAAATATTATTACT
TTATTACAACATCAAGCACGAAAAAAATGAAACCAGAAAATTATACAATT
GCGAAAGAAATATTTAGAATTTAACCTCCCCGTGTGTGTGTGTGCATGCA
GTAAGTAAAATTCCATTTGATCCTTCCAACACTCATGAGACCCACCTATA
TATAATAAGTATACGTACTAAAAAGTTAAATTAAAATTCACTTTAAACCG
AAAGCCCACCCAAGAAAGCCACCCCAGTCGACGGCAGCCACGACGACCCG
TAAATAAACTGCGACACAGTGAATTTACTTGCCTCCGTCGCCGACGTTAT
AACCCGGTAACCCGGCCACCTCACCCGGTGCCCCACGGCCGAACCCGGGC
CGGAGTTCATGTACTCGCCGTAGTATAAAGTATCCAGTGCAAAGTCTCCA
TTCCATTCAAGCCAGCCTCTGGGTTGGATGTGGTCACCCATGTACGTTAA
CATGTACACAACCCTCGAGTAGAGCTTCCACGGCCGGCCTAGGTACGTGG
GGATGCTGCCTTTCGAGGCCTGAAAATCGGGGGCGGCGTAAAGGCTGCAG
TCGTGGATTGAGATGCCCGTGTTCTGATTAGGGTCTTTCCTGTTCTGCGC
CGTGATGGTGTTCTTCTGCATGGCCATCGGCTTGCGAGCGTAGATGGCGC
ACTTCTGTAAGACCACGGCGGCGTTCCCGAAGATGAAGTCCACGGTGCCG
TAGATGTCGCACTCGCGGTAGAACTGCCGGTT
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