CV887304

Overview
NameCV887304
Unique NameCV887304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME5_ARATH (Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.651e-27
Identity = 67/177 (37.85%), Postives = 94/177 (53.11%), Query Frame = -1
Query:  252 RQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQ-NRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 779
            RQFYR   + GTVDFIFG +A V+Q   I  RK    Q NT+TA  N K      GI + +C +       A +  + +YLGRPWK +S  V + + +GD I+P GW  W+G+    +  Y EY N GPG+    RV W   ++  SA E + FTV+ ++   +W+    V    GL
Sbjct:  421 RQFYRNIVVSGTVDFIFGKSATVIQNSLIVVRKGNKGQFNTVTADGNEKGLAMKIGIVLQNCRIVPDKKLAAERLIVESYLGRPWKKFSTTVIINSEIGDVIRPEGWKIWDGESFHKSCRYVEYNNRGPGAITNRRVNW--VKIARSAAEVNDFTVANWLGPINWIQEANVPVTLGL 595          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME56_ARATH (Probable pectinesterase 56 OS=Arabidopsis thaliana GN=PME56 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.429e-25
Identity = 53/106 (50.00%), Postives = 71/106 (66.98%), Query Frame = -1
Query:  462 RQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGW 779
            RQFYR+C I GTVDFIFG AA V Q C I ARKP   Q N +TAQ+R++    +G S   C++ A+ D    KG++ T+LGRPW+ +SRVV+M +++ D I   GW
Sbjct:  181 RQFYRDCYITGTVDFIFGRAAAVFQYCQIEARKPGIGQTNILTAQSREEDTATSGFSFQKCNISASSDLTPIKGTVKTFLGRPWRAFSRVVFMESFIDDVIDRAGW 286          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME_MEDSA (Pectinesterase/pectinesterase inhibitor OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.982e-24
Identity = 60/177 (33.90%), Postives = 87/177 (49.15%), Query Frame = -1
Query:  264 RQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASK-----FTVSQFIYGSSWLPSTGVAF 779
            RQFYR+C I GT+DF+FG    V Q C +  R P   Q+  +TA  R+  N  + +          P   +    + +YLGRPWK YS+VV M + +     P G++ W G    +T  Y EY N GPG+    RV+W G +V+TS   A       F +       +W+  +GV +
Sbjct:  267 RQFYRDCSISGTIDFVFGERFGVFQNCKLVCRLPAKGQQCLVTAGGREKQNSASALVFQSSHFTGEPALTSVTPKV-SYLGRPWKQYSKVVIMDSTIDAIFVPEGYMPWMGSAFKETCTYYEYNNKGPGADTNLRVKWHGVKVLTSNVAAEYYPGKFFEIVNATARDTWIVKSGVPY 442          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME53_ARATH (Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.174e-23
Identity = 63/165 (38.18%), Postives = 88/165 (53.33%), Query Frame = -1
Query:  285 RQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWL 779
            R +Y++C I G+VDFIFGNA  + + C ++A   +A +   +TAQ R    ++TG S   C +          G+   YLGR W  +SRVV+  TYM + I PRGW  W       T++YG+Y  +G G+  G RV W   R +T   EA  F    FI GS W+
Sbjct:  232 RHYYKDCYIEGSVDFIFGNALSLYEGCHVHA---IADKLGAVTAQGRSSVLEDTGFSFVKCKV---------TGTGVLYLGRAWGPFSRVVFAYTYMDNIILPRGWYNWGDPSREMTVFYGQYKCTGAGANYGGRVAWA--RELTD-EEAKPFLSLTFIDGSEWI 381          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME11_ARATH (Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.757e-22
Identity = 56/163 (34.36%), Postives = 83/163 (50.92%), Query Frame = -1
Query:  285 FYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWL 773
            +++ C I G  DFI G+A+ + ++C +++  P      +ITAQ R    + +G +   C L          GS  T+LGRPW  YSRVV+  ++  + + P+GW +W      +T+YYGEY   GPG+    RV W       S  EA+ F    FI G  WL
Sbjct:  185 YFKNCYIEGATDFICGSASSLYERCHLHSLSP---NNGSITAQMRTSATEKSGFTFLGCKL---------TGSGSTFLGRPWGAYSRVVFAYSFFSNVVAPQGWNQWGDSTKENTVYYGEYKCYGPGADREQRVEWSKQ---LSDEEATVFLSKDFIGGKDWL 332          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME15_ARATH (Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.133e-20
Identity = 61/172 (35.47%), Postives = 85/172 (49.42%), Query Frame = -1
Query:  270 RQFYRECDIYGTVDFIFGNAAVVLQKCAI--YARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGV 779
            R F++EC I G++DFIFGN   + Q C I   A+   +    +ITAQ R+  ++ +G S  +C +          GS    LGR W  Y+ VV+  TYM   I P GW  W       T+ +GE+   GPG+    RV + G ++  S  EAS F    FI G  WL  T +
Sbjct:  231 RHFFKECFIQGSIDFIFGNGRSLYQDCTINSIAKGNTSGVTGSITAQGRQSEDEQSGFSFVNCKI---------DGSGEILLGRAWGAYATVVFSNTYMSGIITPEGWNNWGDSTKEKTVTFGEHKCYGPGADYKERVLF-GKQLTDS--EASSFIDVSFIDGDEWLRHTNI 390          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME8_ARATH (Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.193e-19
Identity = 58/170 (34.12%), Postives = 88/170 (51.76%), Query Frame = -1
Query:  285 RQFYRECDIYGTVDFIFGNAAVVLQKCAIYAR----KPMAMQKN-TITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWL 779
            R ++++C I G++DFIFGNA  + Q C I +      P +   N  +TA  R   ++N+G S  +C++          G+   +LGR W+ YSRVV++ T M D I P GW  +N      T++YGEY  SGPG+ +  R     Y    + T+ +    + FI G  WL
Sbjct:  231 RHYFKDCYIQGSIDFIFGNAKSLYQDCRIISMANQLSPGSKAVNGAVTANGRSSKDENSGFSFVNCTI---------GGTGHVWLGRAWRPYSRVVFVSTTMTDVIAPEGWNNFNDPSRDATIFYGEYNCSGPGADMSKRA---PYVQKLNETQVALLINTSFIDGDQWL 388          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME62_ARATH (Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.920e-19
Identity = 57/163 (34.97%), Postives = 79/163 (48.47%), Query Frame = -1
Query:  285 FYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWL 773
            ++ +C I G VDFIFGNA  + Q C I++    A +   I A +R    ++TG S  +C +          G+   YLGR W  YSR VY   ++ D I P GW +W        + +GEY   G G+  G RV W   + +T   E   F   +FIYG  WL
Sbjct:  231 YFYQCYIQGNVDFIFGNAKSLYQDCDIHST---AKRYGAIAAHHRDSETEDTGFSFVNCDI---------SGTGQIYLGRAWGNYSRTVYSNCFIADIITPVGWSDWKHPERQRKVMFGEYNCRGRGAERGGRVPWS--KTLT-RDEVKPFLGREFIYGDQWL 378          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME67_ARATH (Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.722e-18
Identity = 55/167 (32.93%), Postives = 79/167 (47.31%), Query Frame = -1
Query:  282 RQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQK-NTITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLP 779
            R +Y EC I G++DFIFG A  +   C I+      ++   +ITA +R+   + TG       +Y   +          YLGR    YSRV++  TY+   + P GW  W+   +   LY+GEY   GPG+    R  W   + +T   E   F    FI G+SWLP
Sbjct:  183 RHYYHECYIQGSIDFIFGRATSIFNNCEIFVISDKRVKPYGSITAHHRESAEEKTGYVFIRGKVYGIDE---------VYLGRAKGPYSRVIFAKTYLSKTVVPDGWTNWSYHGSTQNLYHGEYKCHGPGAERQKRSDWA--KDLTK-QEVESFLSIDFIDGTSWLP 337          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME14_ARATH (Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.904e-17
Identity = 55/168 (32.74%), Postives = 81/168 (48.21%), Query Frame = -1
Query:  285 RQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTI---TAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWL 779
            R F++ C I G++DFIFGN   + + C +++      ++NTI   TA  +      TG    +C +          GS   +LGR W+ Y+RV++  TYM   +   GW +        T+YYGE+   GPG+    RV    Y  + S  EA+ FT   FI G  WL
Sbjct:  182 RHFFKGCFIEGSIDFIFGNGRSLYEDCTLHS----IAKENTIGCITANGKDTLKDRTGFVFVNCKI---------TGSARVWLGRAWRPYARVIFSKTYMSRVVSLDGWNDMGDPKTQRTVYYGEHRCYGPGANHSKRVT---YAKLLSDVEAAPFTNISFIDGEEWL 333          
The following BLAST results are available for this feature:
BLAST of CV887304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PME5_ARATH2.651e-2737.85Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 P... [more]
PME56_ARATH9.429e-2550.00Probable pectinesterase 56 OS=Arabidopsis thaliana... [more]
PME_MEDSA7.982e-2433.90Pectinesterase/pectinesterase inhibitor OS=Medicag... [more]
PME53_ARATH5.174e-2338.18Probable pectinesterase 53 OS=Arabidopsis thaliana... [more]
PME11_ARATH9.757e-2234.36Putative pectinesterase 11 OS=Arabidopsis thaliana... [more]
PME15_ARATH9.133e-2035.47Probable pectinesterase 15 OS=Arabidopsis thaliana... [more]
PME8_ARATH1.193e-1934.12Probable pectinesterase 8 OS=Arabidopsis thaliana ... [more]
PME62_ARATH5.920e-1934.97Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT... [more]
PME67_ARATH1.722e-1832.93Probable pectinesterase 67 OS=Arabidopsis thaliana... [more]
PME14_ARATH1.904e-1732.74Putative pectinesterase 14 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030E03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887304 ID=CV887304; Name=CV887304; organism=Citrus sinensis; type=EST; length=782bp
TTTTTTTTTTTTTTTTTCCATTTTAAAGACCGGTCACAAATATTATTACT
TTATTACAACATCAAGCACGAAAAAAATGAAACCAGAAAATTATACAATT
GCGAAAGAAATATTTAGAATTTAACCTCCCCGTGTGTGTGTGTGCATGCA
GTAAGTAAAATTCCATTTGATCCTTCCAACACTCATGAGACCCACCTATA
TATAATAAGTATACGTACTAAAAAGTTAAATTAAAATTCACTTTAAACCG
AAAGCCCACCCAAGAAAGCCACCCCAGTCGACGGCAGCCACGACGACCCG
TAAATAAACTGCGACACAGTGAATTTACTTGCCTCCGTCGCCGACGTTAT
AACCCGGTAACCCGGCCACCTCACCCGGTGCCCCACGGCCGAACCCGGGC
CGGAGTTCATGTACTCGCCGTAGTATAAAGTATCCAGTGCAAAGTCTCCA
TTCCATTCAAGCCAGCCTCTGGGTTGGATGTGGTCACCCATGTACGTTAA
CATGTACACAACCCTCGAGTAGAGCTTCCACGGCCGGCCTAGGTACGTGG
GGATGCTGCCTTTCGAGGCCTGAAAATCGGGGGCGGCGTAAAGGCTGCAG
TCGTGGATTGAGATGCCCGTGTTCTGATTAGGGTCTTTCCTGTTCTGCGC
CGTGATGGTGTTCTTCTGCATGGCCATCGGCTTGCGAGCGTAGATGGCGC
ACTTCTGTAAGACCACGGCGGCGTTCCCGAAGATGAAGTCCACGGTGCCG
TAGATGTCGCACTCGCGGTAGAACTGCCGGTT
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