CV887304

Overview
NameCV887304
Unique NameCV887304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME10_ARATH (Putative pectinesterase 10 OS=Arabidopsis thaliana GN=PME10 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.234e-16
Identity = 57/177 (32.20%), Postives = 78/177 (44.07%), Query Frame = -1
Query:  264 RQFYRECDIYGTVDFIFGNAAVVLQKCAIYARK---PMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEAS--KFTVSQFIYGSSWLPSTGVAF 779
            R +Y+ C I G +DFIFG A  + + C +  R    P      TITAQ R  P    G    DC++          GS    LGR WK YSRV++  +   D+I P GW  W        + + E+  +G G+    RV W     +T A+E    +FT   FI    WL    + F
Sbjct:  177 RHYYKRCVISGGIDFIFGGAQSIFEGCTLKLRVGIYPPNEVYGTITAQGRDSPTDKGGFVFKDCTVM---------GSGKALLGRAWKSYSRVIFYRSMFSDNILPIGWDAWKAKGQEGHITFVEFGCTGVGADTSKRVPW-----LTKASEKDVLQFTNLTFIDEEGWLSRLPIKF 339          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME31_ARATH (Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 51/139 (36.69%), Postives = 71/139 (51.08%), Query Frame = -1
Query:  366 RQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEW-NGDFALDTLYYGEYMNSGPGSAVGHRVRW 779
            +Q+ ++C I G+VDFIFGN+  +L+ C I+ +      +  ITAQ+RK   ++TG     C +          G +  YLGRPW  + RVV   TYM   I+  GW  W N +      +Y EY   GPGS    RV W
Sbjct:  152 KQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKS-----QGFITAQSRKSSQESTGYVFLRCVITG----NGQSGYM--YLGRPWGPFGRVVLAYTYMDACIRNVGWHNWGNAENERSACFY-EYRCFGPGSCSSERVPW 278          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME49_ARATH (Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15
Identity = 53/163 (32.52%), Postives = 73/163 (44.79%), Query Frame = -1
Query:  285 FYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWL 773
            F++ C I GT DFIFG  A +     ++A   +      I A NR+   +  G S   C +               YLGR W  + +VVY  T M   + P GW E        T++YGEYM +GPGS   H+ +   +       EAS+F    +I GS WL
Sbjct:  207 FFKNCYIEGTYDFIFGRGASLYLTTQLHA---VGDGLRVIAAHNRQSTTEQNGYSFVHCKVTGV--------GTGIYLGRAWMSHPKVVYSYTEMSSVVNPSGWQENRVRAHDKTVFYGEYMCTGPGS---HKAKRVAHTQDIDNKEASQFLTLGYIKGSKWL 355          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME29_ARATH (Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.971e-15
Identity = 46/140 (32.86%), Postives = 66/140 (47.14%), Query Frame = -1
Query:  366 RQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQ--KNTITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRW 779
            R ++  C I G VDFIFG    + Q C I              ITAQ R +P    G    +C +Y         G+   +LGRPW+ YSRV++  + + D + P GW  WN     + L + E+   G G+ +G RV+W
Sbjct:  174 RHYFHRCTIQGAVDFIFGTGQSIYQSCVIQVLGGQLEPGLAGYITAQGRTNPYDANGFIFINCLVY---------GTGMAFLGRPWRGYSRVIFYNSNLTDVVVPEGWDAWNFVGHENQLVFAEHGCFGSGANIGRRVKW 304          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME68_ARATH (Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.186e-15
Identity = 49/166 (29.52%), Postives = 76/166 (45.78%), Query Frame = -1
Query:  285 RQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEW-NGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWL 779
            R +++EC I G++DFIFGN   + + C +++   +A +  +I A  R  P + TG +   C +          G+ P Y+GR    YSR+VY  TY    +   GW +W +      T ++G Y   GPG+A    V W           A  F    F+ G  W+
Sbjct:  207 RHYFKECYIEGSIDFIFGNGRSMYKDCELHS---IASRFGSIAAHGRTCPEEKTGFAFVGCRV---------TGTGPLYVGRAMGQYSRIVYAYTYFDALVAHGGWDDWDHKSNKSKTAFFGVYNCYGPGAAATRGVSWAR---ALDYESAHPFIAKSFVNGRHWI 357          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME50_ARATH (Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.390e-14
Identity = 52/163 (31.90%), Postives = 72/163 (44.17%), Query Frame = -1
Query:  285 FYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWL 773
            F+++C I GT DFIFG  A +     ++A   +      ITAQ R+   +  G +   C +               YLGR W  + +VVY  T M   + P GW E        T++YGEY   GPGS +  RV    Y       E + F    +I GS+WL
Sbjct:  207 FFKDCYIEGTYDFIFGRGASLYLNTQLHA---VGDGLRVITAQGRQSATEQNGYTFVHCKVTGT--------GTGIYLGRSWMSHPKVVYAFTEMTSVVNPSGWRENLNRGYDKTVFYGEYKCFGPGSHLEKRV---PYTQDIDKNEVTPFLTLGYIKGSTWL 355          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME55_ARATH (Probable pectinesterase 55 OS=Arabidopsis thaliana GN=PME55 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.488e-14
Identity = 46/140 (32.86%), Postives = 62/140 (44.29%), Query Frame = -1
Query:  366 RQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNT--ITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRW 779
            R ++  C I G VDFI G+   + Q C I           T  ITAQ R + N   G    +C ++         G    YLGR W+ YSRV++  + + D + P GW EWN       L Y E+   G GS    R +W
Sbjct:  169 RHYFHRCTIQGAVDFILGSGQSIYQSCVIQVLGGQLGPGVTGYITAQGRTNANDANGFVFINCLVH---------GFGKAYLGRAWRPYSRVIFYNSNLTDVVDPLGWWEWNYQGYEKQLTYAEHGCFGSGSNTSRRAKW 299          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PPME1_ARATH (Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.339e-13
Identity = 50/163 (30.67%), Postives = 74/163 (45.40%), Query Frame = -1
Query:  285 FYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWL 773
            F+++C + GT DFIFG+   +     ++    +      I A   K   + +G S   C +        + G I  YLGR W  + +VVY  T M   + P GW E        T++YGEY  SGPGS   H+ +   +       EA++F    +I GS WL
Sbjct:  207 FFKDCYVEGTFDFIFGSGTSMYLGTQLHV---VGDGIRVIAAHAGKSAEEKSGYSFVHCKV------TGTGGGI--YLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYKCSGPGS---HKAKRVPFTQDIDDKEANRFLSLGYIQGSKWL 355          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME48_ARATH (Probable pectinesterase 48 OS=Arabidopsis thaliana GN=PME48 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.409e-12
Identity = 50/163 (30.67%), Postives = 73/163 (44.79%), Query Frame = -1
Query:  285 FYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWL 773
            F+++C + GT DFIFG+   +     ++    +      I A   K   + +G S   C +        + G I  YLGR W  + +VVY  T M   + P GW E        T++YGEY  SGPGS   H+ +   +       EA+ F    +I GS WL
Sbjct:  207 FFKDCYVEGTFDFIFGSGTSMYLGTQLHV---VGDGIRVIAAHAGKSAEEKSGYSFVHCKV------TGTGGGI--YLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYKCSGPGS---HKAKRVPFTQDIDDKEANCFLSLGYIQGSKWL 355          
BLAST of CV887304 vs. ExPASy Swiss-Prot
Match: PME52_ARATH (Putative pectinesterase 52 OS=Arabidopsis thaliana GN=PME52 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.109e-12
Identity = 49/168 (29.17%), Postives = 73/168 (43.45%), Query Frame = -1
Query:  285 RQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNT---ITAQNRKDPNQNTGISIHDCSLYAAPDFQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWL 779
            R  ++ C I G +DFIFG+   V + C I A       K +   ITAQ R   +  +G      S+          GS   YLGR +  +SRV+++ T +   + P GW  W+      +  Y E    G GS +  RV W     + S     +F++S FI    W+
Sbjct:  131 RHHFKNCYIEGAIDFIFGSGQSVYEDCHINATAGALASKVSFGYITAQGRSSDSDPSGFVFLRGSV---------SGSTSVYLGRAYGPFSRVIFIQTDLSSVVHPEGWYSWHYGGYEMSFTYAEVECKGAGSDMSRRVPW--IDKLHSFYTKQQFSISNFIDQDQWI 287          
The following BLAST results are available for this feature:
BLAST of CV887304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PME10_ARATH1.234e-1632.20Putative pectinesterase 10 OS=Arabidopsis thaliana... [more]
PME31_ARATH1.365e-1536.69Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31... [more]
PME49_ARATH1.782e-1532.52Probable pectinesterase 49 OS=Arabidopsis thaliana... [more]
PME29_ARATH3.971e-1532.86Probable pectinesterase 29 OS=Arabidopsis thaliana... [more]
PME68_ARATH5.186e-1529.52Probable pectinesterase 68 OS=Arabidopsis thaliana... [more]
PME50_ARATH4.390e-1431.90Probable pectinesterase 50 OS=Arabidopsis thaliana... [more]
PME55_ARATH7.488e-1432.86Probable pectinesterase 55 OS=Arabidopsis thaliana... [more]
PPME1_ARATH6.339e-1330.67Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PP... [more]
PME48_ARATH2.409e-1230.67Probable pectinesterase 48 OS=Arabidopsis thaliana... [more]
PME52_ARATH4.109e-1229.17Putative pectinesterase 52 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030E03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887304 ID=CV887304; Name=CV887304; organism=Citrus sinensis; type=EST; length=782bp
TTTTTTTTTTTTTTTTTCCATTTTAAAGACCGGTCACAAATATTATTACT
TTATTACAACATCAAGCACGAAAAAAATGAAACCAGAAAATTATACAATT
GCGAAAGAAATATTTAGAATTTAACCTCCCCGTGTGTGTGTGTGCATGCA
GTAAGTAAAATTCCATTTGATCCTTCCAACACTCATGAGACCCACCTATA
TATAATAAGTATACGTACTAAAAAGTTAAATTAAAATTCACTTTAAACCG
AAAGCCCACCCAAGAAAGCCACCCCAGTCGACGGCAGCCACGACGACCCG
TAAATAAACTGCGACACAGTGAATTTACTTGCCTCCGTCGCCGACGTTAT
AACCCGGTAACCCGGCCACCTCACCCGGTGCCCCACGGCCGAACCCGGGC
CGGAGTTCATGTACTCGCCGTAGTATAAAGTATCCAGTGCAAAGTCTCCA
TTCCATTCAAGCCAGCCTCTGGGTTGGATGTGGTCACCCATGTACGTTAA
CATGTACACAACCCTCGAGTAGAGCTTCCACGGCCGGCCTAGGTACGTGG
GGATGCTGCCTTTCGAGGCCTGAAAATCGGGGGCGGCGTAAAGGCTGCAG
TCGTGGATTGAGATGCCCGTGTTCTGATTAGGGTCTTTCCTGTTCTGCGC
CGTGATGGTGTTCTTCTGCATGGCCATCGGCTTGCGAGCGTAGATGGCGC
ACTTCTGTAAGACCACGGCGGCGTTCCCGAAGATGAAGTCCACGGTGCCG
TAGATGTCGCACTCGCGGTAGAACTGCCGGTT
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