CV887302

Overview
NameCV887302
Unique NameCV887302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 6.191e-27
Identity = 60/178 (33.71%), Postives = 101/178 (56.74%), Query Frame = 2
Query:  140 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 667
            F  L+  +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L ++L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L +R    ++     G G+ E ++WL
Sbjct:    5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 6.191e-27
Identity = 60/178 (33.71%), Postives = 101/178 (56.74%), Query Frame = 2
Query:  140 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 667
            F  L+  +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L ++L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L +R    ++     G G+ E ++WL
Sbjct:    5 FAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 6.191e-27
Identity = 60/178 (33.71%), Postives = 101/178 (56.74%), Query Frame = 2
Query:  140 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 667
            F  L+  +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L ++L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L +R    ++     G G+ E ++WL
Sbjct:    5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARF5_CHICK (ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 8.086e-27
Identity = 63/184 (34.24%), Postives = 104/184 (56.52%), Query Frame = 2
Query:  149 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 694
            ++  IF K +  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R ++S   L+K+L+ ++L+ A LL+ ANKQD+P+A+   EL   L L+ L  R    +A     G G+ + ++WL    E SKR
Sbjct:    8 IFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESAEELQKMLQEDELRDAVLLVFANKQDMPNAMVVSELTDKLGLQALRSRTWYVQATCATQGTGLYDGLDWLSH--ELSKR 180          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 8.086e-27
Identity = 61/169 (36.09%), Postives = 94/169 (55.62%), Query Frame = 2
Query:  161 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 667
            IF   E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K   WD+GGQ  +R +W  YY     ++FV+D A   R ++++T L +++ + +++ A +LI ANKQDLPDA+   E+   L L ++ +R    +      G G+ E + WL
Sbjct:    8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-------IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLSEGLIWL 169          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 8.086e-27
Identity = 60/183 (32.79%), Postives = 102/183 (55.74%), Query Frame = 2
Query:  149 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 691
            L+  +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L ++L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L +R    ++     G G+ E ++WL   +   K
Sbjct:    8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNQIRNQK 181          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 8.086e-27
Identity = 60/178 (33.71%), Postives = 101/178 (56.74%), Query Frame = 2
Query:  140 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 667
            F  L+  +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L ++L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L +R    ++     G G+ E ++WL
Sbjct:    5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 8.086e-27
Identity = 60/178 (33.71%), Postives = 101/178 (56.74%), Query Frame = 2
Query:  140 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 667
            F  L+  +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L ++L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L +R    ++     G G+ E ++WL
Sbjct:    5 FGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARL3_RAT (ADP-ribosylation factor-like protein 3 OS=Rattus norvegicus GN=Arl3 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.379e-26
Identity = 64/173 (36.99%), Postives = 99/173 (57.23%), Query Frame = 2
Query:  176 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 694
            E  +L+LG+D AGKTTLL++L S     E +    I PT G NI  ++    KL  WD+GGQ  +R  W  Y+E    +++VID+A   RFE++   L ++L  E L   P+L+ ANKQDL  A  A E+A  L+L  + +RV   ++ S   G G+++ + W+ + +   K+
Sbjct:   17 EVRILLLGLDNAGKTTLLKQLAS-----EDI--SHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLVFANKQDLLTAAPAAEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAKKK 182          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARL2_HUMAN (ADP-ribosylation factor-like protein 2 OS=Homo sapiens GN=ARL2 PE=1 SV=4)

HSP 1 Score: 119.783 bits (299), Expect = 1.801e-26
Identity = 63/166 (37.95%), Postives = 93/166 (56.02%), Query Frame = 2
Query:  176 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 673
            E  +L+LG+D AGKTT+L+K         G   D I PT+G NI  +E    KL  WD+GGQ  LRS W  Y+E    +++V+D+A   R +D +  L+ +L  E L GA LLI ANKQDLP A+S++ +   L+L  +       +  S   G  +   ++WL++
Sbjct:   16 ELRLLMLGLDNAGKTTILKKFN-------GEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLD 174          
The following BLAST results are available for this feature:
BLAST of CV887302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
ARF2_ORYSJ6.191e-2733.71ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF2_ARATH6.191e-2733.71ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF1_ORYSJ6.191e-2733.71ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF5_CHICK8.086e-2734.24ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5... [more]
ARF3_DROME8.086e-2736.09ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF1_SOLTU8.086e-2732.79ADP-ribosylation factor 1 OS=Solanum tuberosum PE=... [more]
ARF1_DAUCA8.086e-2733.71ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF1_ARATH8.086e-2733.71ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARL3_RAT1.379e-2636.99ADP-ribosylation factor-like protein 3 OS=Rattus n... [more]
ARL2_HUMAN1.801e-2637.95ADP-ribosylation factor-like protein 2 OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030E02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887302 ID=CV887302; Name=CV887302; organism=Citrus sinensis; type=EST; length=803bp
GCCGAGAGCTCTCTTCTTCAATCTCTCAAAATGTACATGAGTGAGACTTT
GGTATTATGAAGCCCTTTTCTTCTCACGGTTGAAGGTTAGCGGGAATAAA
TACAAATTAACGTTAAAGAAGTTAGAGATGTTCTCGCTGTTTTATGGACT
TTGGAAGTATATATTTACTAAGACTGAGTTTCATGTGCTCATTCTTGGAA
TTGACAAGGCTGGGAAAACGACTTTGTTGGAGAAGTTGAAGTCTGTCTAC
TCAAATGTGGAAGGCCTCCCACCTGATCGAATTGTTCCTACTGTGGGACT
GAATATTGGTCGTATTGAAGTTTCAAATTCAAAGCTGGTCTTCTGGGATC
TGGGTGGTCAGCCTGGCCTTCGTTCAATTTGGGAGAAATATTATGAAGAG
GCACATGCTGTGGTATTTGTAATTGATGCTGCTTGCCCTTCACGTTTTGA
AGATTCAAAAACTGCTCTAGAAAAGGTTCTTCGGAATGAGGATTTGCAAG
GAGCGCCACTTTTGATACTAGCAAACAAACAGGATCTTCCTGATGCTGTA
TCAGCTGATGAACTAGCACGATATCTAGACCTTAAGAAGTTGGATGAACG
GGTTTGCATGTTTGAAGCAGTGTCAGGTTATGATGGATTCGGAATAAAAG
AAAGTGTAGAGTGGTTGGTCGAGGTAATGGAGAGGAGCAAGAGAACTGAA
ATGTTGAGAGCTCGTGCTGGTGCAAGTACTGGTTCAGTTTAGTAGGAACA
TTATATTAAATCACAGCTGATGTCCTCTGCCTTTTGTAGCTTCTGTAAAT
AAA
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