CV887302

Overview
NameCV887302
Unique NameCV887302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARL8A_XENTR (ADP-ribosylation factor-like protein 8A OS=Xenopus tropicalis GN=arl8a PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.073e-26
Identity = 60/184 (32.61%), Postives = 103/184 (55.98%), Query Frame = 2
Query:  122 LEMFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 673
            L +F+     +K +F K E  + ++G+  +GKTT +  + S   N +      ++PTVG N+ +I   N  +  WD+GGQP  RS+WE+Y     A+V+++DAA   + E SK  L  +L    LQG P+L+L NK+D+P A+   EL   ++L  + +R     ++S  +   I  +++WL++
Sbjct:    2 LALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNED------MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQDKIEASKNELHNLLDKAQLQGIPVLVLGNKRDIPGALDEKELIERMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 179          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARL8A_HUMAN (ADP-ribosylation factor-like protein 8A OS=Homo sapiens GN=ARL8A PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.073e-26
Identity = 60/184 (32.61%), Postives = 103/184 (55.98%), Query Frame = 2
Query:  122 LEMFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 673
            + +F+     +K +F K E  + ++G+  +GKTT +  + S   N +      ++PTVG N+ +I   N  +  WD+GGQP  RS+WE+Y     A+V+++DAA   + E SK  L  +L    LQG P+L+L NK+DLP A+   EL   ++L  + +R     ++S  +   I  +++WL++
Sbjct:    2 IALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNED------MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 179          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARL2_MOUSE (ADP-ribosylation factor-like protein 2 OS=Mus musculus GN=Arl2 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.073e-26
Identity = 63/166 (37.95%), Postives = 92/166 (55.42%), Query Frame = 2
Query:  176 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 673
            E  +L+LG+D AGKTT+L+K         G   D I PT+G NI  +E    KL  WD+GGQ  LRS W  Y+E    +++V+D+A   R +D +  L+ +L  E L GA LLI ANKQDLP A+S + +   L+L  +       +  S   G  +   ++WL++
Sbjct:   16 ELRLLMLGLDNAGKTTILKKFN-------GEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD 174          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARF4_PONAB (ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 PE=2 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 3.073e-26
Identity = 63/184 (34.24%), Postives = 104/184 (56.52%), Query Frame = 2
Query:  149 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 694
            L+  +F K +  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W+ Y++    ++FV+D+    R ++    L+K+L  ++L+ A LL+ ANKQDLP+A++  E+   L L+ L  R    +A     G G+ E ++WL    E SKR
Sbjct:    8 LFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSN--ELSKR 180          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARF4_HUMAN (ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 3.073e-26
Identity = 63/184 (34.24%), Postives = 104/184 (56.52%), Query Frame = 2
Query:  149 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 694
            L+  +F K +  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GGQ  +R +W+ Y++    ++FV+D+    R ++    L+K+L  ++L+ A LL+ ANKQDLP+A++  E+   L L+ L  R    +A     G G+ E ++WL    E SKR
Sbjct:    8 LFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSN--ELSKR 180          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARL8A_CHICK (ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.013e-26
Identity = 60/184 (32.61%), Postives = 103/184 (55.98%), Query Frame = 2
Query:  122 LEMFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 673
            L +F+     ++ +F K E  + ++G+  +GKTT +  + S   N +      ++PTVG N+ +I   N  +  WD+GGQP  RS+WE+Y     A+V+++DAA   + E SK  L  +L    LQG P+L+L NK+DLP A+   EL   ++L  + +R     ++S  +   I  +++WL++
Sbjct:    2 LALFNKLLDWFRALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNED------MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 179          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 4.013e-26
Identity = 60/169 (35.50%), Postives = 93/169 (55.03%), Query Frame = 2
Query:  161 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 667
            IF   E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K   WD+GGQ  +R +W  YY     ++FV+D A   R ++++  L +++ + +++ A +LI ANKQDLPDA+   E+   L L ++ +R    +      G G+ E + WL
Sbjct:    8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-------IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 169          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.013e-26
Identity = 60/169 (35.50%), Postives = 93/169 (55.03%), Query Frame = 2
Query:  161 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 667
            IF   E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K   WD+GGQ  +R +W  YY     ++FV+D A   R ++++  L +++ + +++ A +LI ANKQDLPDA+   E+   L L ++ +R    +      G G+ E + WL
Sbjct:    8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-------IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 169          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 4.013e-26
Identity = 60/169 (35.50%), Postives = 93/169 (55.03%), Query Frame = 2
Query:  161 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 667
            IF   E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K   WD+GGQ  +R +W  YY     ++FV+D A   R ++++  L +++ + +++ A +LI ANKQDLPDA+   E+   L L ++ +R    +      G G+ E + WL
Sbjct:    8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-------IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 169          
BLAST of CV887302 vs. ExPASy Swiss-Prot
Match: ARF6_HUMAN (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 4.013e-26
Identity = 60/169 (35.50%), Postives = 93/169 (55.03%), Query Frame = 2
Query:  161 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 667
            IF   E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K   WD+GGQ  +R +W  YY     ++FV+D A   R ++++  L +++ + +++ A +LI ANKQDLPDA+   E+   L L ++ +R    +      G G+ E + WL
Sbjct:    8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-------IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 169          
The following BLAST results are available for this feature:
BLAST of CV887302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
ARL8A_XENTR3.073e-2632.61ADP-ribosylation factor-like protein 8A OS=Xenopus... [more]
ARL8A_HUMAN3.073e-2632.61ADP-ribosylation factor-like protein 8A OS=Homo sa... [more]
ARL2_MOUSE3.073e-2637.95ADP-ribosylation factor-like protein 2 OS=Mus musc... [more]
ARF4_PONAB3.073e-2634.24ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 ... [more]
ARF4_HUMAN3.073e-2634.24ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 ... [more]
ARL8A_CHICK4.013e-2632.61ADP-ribosylation factor-like protein 8A OS=Gallus ... [more]
ARF6_RAT4.013e-2635.50ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]
ARF6_PIG4.013e-2635.50ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE... [more]
ARF6_MOUSE4.013e-2635.50ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ... [more]
ARF6_HUMAN4.013e-2635.50ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030E02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887302 ID=CV887302; Name=CV887302; organism=Citrus sinensis; type=EST; length=803bp
GCCGAGAGCTCTCTTCTTCAATCTCTCAAAATGTACATGAGTGAGACTTT
GGTATTATGAAGCCCTTTTCTTCTCACGGTTGAAGGTTAGCGGGAATAAA
TACAAATTAACGTTAAAGAAGTTAGAGATGTTCTCGCTGTTTTATGGACT
TTGGAAGTATATATTTACTAAGACTGAGTTTCATGTGCTCATTCTTGGAA
TTGACAAGGCTGGGAAAACGACTTTGTTGGAGAAGTTGAAGTCTGTCTAC
TCAAATGTGGAAGGCCTCCCACCTGATCGAATTGTTCCTACTGTGGGACT
GAATATTGGTCGTATTGAAGTTTCAAATTCAAAGCTGGTCTTCTGGGATC
TGGGTGGTCAGCCTGGCCTTCGTTCAATTTGGGAGAAATATTATGAAGAG
GCACATGCTGTGGTATTTGTAATTGATGCTGCTTGCCCTTCACGTTTTGA
AGATTCAAAAACTGCTCTAGAAAAGGTTCTTCGGAATGAGGATTTGCAAG
GAGCGCCACTTTTGATACTAGCAAACAAACAGGATCTTCCTGATGCTGTA
TCAGCTGATGAACTAGCACGATATCTAGACCTTAAGAAGTTGGATGAACG
GGTTTGCATGTTTGAAGCAGTGTCAGGTTATGATGGATTCGGAATAAAAG
AAAGTGTAGAGTGGTTGGTCGAGGTAATGGAGAGGAGCAAGAGAACTGAA
ATGTTGAGAGCTCGTGCTGGTGCAAGTACTGGTTCAGTTTAGTAGGAACA
TTATATTAAATCACAGCTGATGTCCTCTGCCTTTTGTAGCTTCTGTAAAT
AAA
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