CV887282

Overview
NameCV887282
Unique NameCV887282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV887282 vs. ExPASy Swiss-Prot
Match: RL21_SULTO (50S ribosomal protein L21e OS=Sulfolobus tokodaii GN=rpl21e PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = -3 
Query:  377 GLRSRTRDLFARPFRKKGYIP-LSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHV 649
            G R+RTR L  +  R++G +P LS  +  +K GDYV +K+N +VHKGMPH+ YHG+ G +    KR     +   +G++  +K I VR EH+
Sbjct:    7 GYRTRTRKLLTKNVRERGAVPRLSLLMEEFKEGDYVVIKINPSVHKGMPHRRYHGKVGVIQG--KRGKAYIVRVTLGDK--EKVIIVRPEHL 94
[Close]
BLAST of CV887282 vs. ExPASy Swiss-Prot
Match: RL21_AERPE (50S ribosomal protein L21e OS=Aeropyrum pernix GN=rpl21e PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = -3 
Query:  371 AGHGLRSRTRDLFARPFRKKGYIP-LSTYLRTYKIGDYVDVKVNGAVHK-GMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQP 658
            A  G R+RTR L  +P R+KG IP LSTYLR Y++GD V + +N +    GMPH+ +HG TG V  V KR    E+   +G +  +K + V   H++P
Sbjct:    4 APRGYRNRTRRLLRKPVREKGSIPRLSTYLREYRVGDKVAIIINPSFPDWGMPHRRFHGLTGTV--VGKRGEAYEVEVYLGRK--RKTLFVPPVHLKP 97
The following BLAST results are available for this feature:
BLAST of CV887282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RL21_SULTO3.035e-1141.3050S ribosomal protein L21e OS=Sulfolobus tokodaii ... [more]
RL21_AERPE3.035e-1142.8650S ribosomal protein L21e OS=Aeropyrum pernix GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030D02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887282 ID=CV887282; Name=CV887282; organism=Citrus sinensis; type=EST; length=723bp
GAAACATCTCTTGTTTCTAATATAAAATGAAGATTAAAAATAAACATCTC
TGCAATTGCAGTTCCTCTCCAAAAACAAAACTAATAAGGATGAAAATACA
TCCAAATAAGACCATGTCCAGAAAAGTCTGCAACAAGTAACAAAACAGCA
ACAATACCAAAAAGATAACCTAGTAACCACCCTTAAGATCATTGACGACA
TCATAAGGAATGGGAGTGACAGTTTCCAATGTTGCACCTTCCACCATGAA
ACCTGGTTTAGGGCCCTTTGGCTGCCTCTTTGTACTGATGACCTCACCTC
TTGCCTTAGCATCTGCCTTGAGTTCATCATTCTTCTTCTTCCTCAGCTTG
AACTCCTCGGTACACCTTGAAGGTTGAACATGCTCCACGCGAACATGAAT
CCTCTTCTTGATGATCCTGTTACCAACCTGCTTGTTAATCTCGACGCCGA
TAGCGCGCTTGGTGACATTCCAGACACGGCCGGTACGTCCATGGTAGAAC
TTGTGGGGCATACCTTTGTGAACGGCGCCGTTCACTTTGACGTCAACGTA
GTCGCCGATTTTGTAAGTCCTAAGGTAAGTGGACAAGGGGATGTAACCCT
TCTTTCTGAAGGGGCGTGCGAACAAATCCCTTGTTCGGGACCTCAAACCG
TGACCGGCCGGCATGTTTGAGTCACTGGTCCTTTTTTCTCTCTGGAGAAG
AGGAAGGAGATGTGAGTGTGCCT
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