CV887275

Overview
NameCV887275
Unique NameCV887275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSMA_SULIY (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.242e-28
Identity = 67/166 (40.36%), Postives = 105/166 (63.25%), Query Frame = -3
Query:  267 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 749
            D  S+ K+  +D+H+  + AGL +D RVLI+ AR     HRL  ++PV+++Y+T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLEKNYKE  + ++TI LA++AL   ++   K     +E+   + + GL
Sbjct:   62 DVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSMA_SULIN (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=psmA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.242e-28
Identity = 67/166 (40.36%), Postives = 105/166 (63.25%), Query Frame = -3
Query:  267 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 749
            D  S+ K+  +D+H+  + AGL +D RVLI+ AR     HRL  ++PV+++Y+T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLEKNYKE  + ++TI LA++AL   ++   K     +E+   + + GL
Sbjct:   62 DVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSMA_SULIM (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.242e-28
Identity = 67/166 (40.36%), Postives = 105/166 (63.25%), Query Frame = -3
Query:  267 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 749
            D  S+ K+  +D+H+  + AGL +D RVLI+ AR     HRL  ++PV+++Y+T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLEKNYKE  + ++TI LA++AL   ++   K     +E+   + + GL
Sbjct:   62 DVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSMA_SULIL (Proteasome subunit alpha OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.242e-28
Identity = 67/166 (40.36%), Postives = 105/166 (63.25%), Query Frame = -3
Query:  267 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 749
            D  S+ K+  +D+H+  + AGL +D RVLI+ AR     HRL  ++PV+++Y+T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLEKNYKE  + ++TI LA++AL   ++   K     +E+   + + GL
Sbjct:   62 DVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSMA_SULIK (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=psmA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.242e-28
Identity = 67/166 (40.36%), Postives = 105/166 (63.25%), Query Frame = -3
Query:  267 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 749
            D  S+ K+  +D+H+  + AGL +D RVLI+ AR     HRL  ++PV+++Y+T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLEKNYKE  + ++TI LA++AL   ++   K     +E+   + + GL
Sbjct:   62 DVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSMA_SULIA (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.27) GN=psmA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.242e-28
Identity = 67/166 (40.36%), Postives = 105/166 (63.25%), Query Frame = -3
Query:  267 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 749
            D  S+ K+  +D+H+  + AGL +D RVLI+ AR     HRL  ++PV+++Y+T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLEKNYKE  + ++TI LA++AL   ++   K     +E+   + + GL
Sbjct:   62 DVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSMA_PYRKO (Proteasome subunit alpha OS=Pyrococcus kodakaraensis GN=psmA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.824e-28
Identity = 73/173 (42.20%), Postives = 108/173 (62.43%), Query Frame = -3
Query:  231 SVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQ-ETIKLAIRALLEVVES-GGKNIEVAVMTR-EKGLKQLDEAEIDAMV 740
            S  KI  +D+HIA A +G+ ADARVL++RAR+E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P L++TDPSG +  WKA A G   N+     E++Y++  G+ + IKLAI AL + +E    + IEVA +T  EK  K+L   E++  +
Sbjct:   65 SYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNE---KPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRDDIGKDDAIKLAILALAKTLEEPTAEGIEVAYITMDEKRWKKLPREELEKYI 234          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSMA_METJA (Proteasome subunit alpha OS=Methanocaldococcus jannaschii GN=psmA PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.824e-28
Identity = 71/174 (40.80%), Postives = 109/174 (62.64%), Query Frame = -3
Query:  231 RSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGQETIKLAIRALLEVVES-GGKNIEVAVMT-REKGLKQLDEAEIDAMV 743
            RS+ KI  +D+H+A A +GL ADARVLI+RAR+E Q +RLT  + +++E + + I  ++Q YTQ GGVRPFG+S LI G D       L++TDPSG    +KA A G     + E LEK Y+ + +  E ++LAI AL +  E    +N++V ++T ++   K++   EI  ++
Sbjct:   63 RSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGID--KNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANEDIKPENVDVCIITVKDAQFKKIPVEEIKKLI 234          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSMA_THEON (Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=psmA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.994e-28
Identity = 72/169 (42.60%), Postives = 106/169 (62.72%), Query Frame = -3
Query:  243 SVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQE-TIKLAIRALLEVVES-GGKNIEVAVMT-REKGLKQLDEAEI 740
            S  KI  +D+HIA A +G+ ADARVL++RAR+E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P LY+TDPSG +  W+A A G   N+     E +Y +    E  IKLAI AL + +E    ++IEVA +T ++K  K++D+ E+
Sbjct:   65 SYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQVYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVN---DKPELYETDPSGAYFEWRAVAIGSGRNTAMAIFEDHYSDDLDMEGAIKLAILALAKTLEEPSPESIEVAYITMKDKRWKKMDKEEV 230          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSMA_THEK1 (Proteasome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=psmA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.994e-28
Identity = 73/170 (42.94%), Postives = 107/170 (62.94%), Query Frame = -3
Query:  240 SVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQ-ETIKLAIRALLEVVES-GGKNIEVAVMTR-EKGLKQLDEAEID 740
            S  KI  +D+HIA A +G+ ADARVL++RAR+E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P L++TDPSG +  WKA A G   N+     E++Y++  G+ + IKLAI AL + +E    + IEVA +T  EK  K+L   E++
Sbjct:   65 SYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNE---KPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRDDIGKDDAIKLAILALAKTLEEPTAEGIEVAYITMDEKRWKKLPREELE 231          
The following BLAST results are available for this feature:
BLAST of CV887275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
PSMA_SULIY2.242e-2840.36Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIN2.242e-2840.36Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIM2.242e-2840.36Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIL2.242e-2840.36Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIK2.242e-2840.36Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIA2.242e-2840.36Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_PYRKO3.824e-2842.20Proteasome subunit alpha OS=Pyrococcus kodakaraens... [more]
PSMA_METJA3.824e-2840.80Proteasome subunit alpha OS=Methanocaldococcus jan... [more]
PSMA_THEON4.994e-2842.60Proteasome subunit alpha OS=Thermococcus onnurineu... [more]
PSMA_THEK14.994e-2842.94Proteasome subunit alpha OS=Thermococcus sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030C11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887275 ID=CV887275; Name=CV887275; organism=Citrus sinensis; type=EST; length=751bp
TGACCATATAAGAAAATTTAAGCTGGCAATAATCTGGTGCTCTGTTATAT
CTTTTGAATGCAAATCTAAAAGCATATAAAACTTAACCACAAAAAAAGCA
TACTAAAATTCTGAAAGGTGAAAAACAACAGGCAATGGAAAAAACAGAAG
CCAGAACTAAAAACTCATGTTTCCTTGGGAGGTCCCTTCTTTGCAGCCTC
AGCGGCGGCCTTCTTTGCTTCAATCTCGGCTACCATGGCATCAATTTCAG
CTTCATCAAGCTGCTTCAGACCCTTCTCCCTTGTCATCACAGCAACTTCT
ATGTTTTTGCCCCCACTCTCAACAACCTCAAGTAATGCCCGAATTGCAAG
CTTTATAGTTTCTTGCCCGGAAGTTTCCTTATAGTTTTTCTCCAGAAACT
CCCTCATTGAATTAGAGTTTCTCCCAGTTGCATTAGCTTTCCAAGCAGAA
AATGTCCCAGAAGGATCTGTCTGATATAGTGATGGCACGCCAGTGTATGG
ATCAAAGCCCACAATCAGAGTAGAAAGACCAAATGGTCTCACACCACCGC
TTTGTGTGTACTTCTGCTGGAGACCTGCAATGTAACGAGTGATGTACTCA
ACAGTTACTGGGTCCTCAACAGTCAGCCTGTGGCTCTGACATTCTATTCG
AGCCCTGTTTATCAGTACACGAGCATCTGCTTTAAGTCCAGCACAGGCCA
ATGCAATATGATTATCCAAGCTGACAATCTTCCTCACTGATCTGGAGTCC
T
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