CV887275

Overview
NameCV887275
Unique NameCV887275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSMA_SULTO (Proteasome subunit alpha OS=Sulfolobus tokodaii GN=psmA PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.453e-27
Identity = 66/166 (39.76%), Postives = 101/166 (60.84%), Query Frame = -3
Query:  267 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 749
            D  S+ K+  LD+H+  + AGL +D R+LI+ AR +   HRL  ++P+ ++Y+T+ ++ ++Q YTQ GGVRPFG++ +I G D     P L  T+PSG F  + A A G+   +  E+ EKNY+E  + Q+TI L IRAL   ++ G K    NIEV     + G+
Sbjct:   62 DVDSIEKVFILDDHVGCSFAGLASDGRILIDYARSQALQHRLIYDEPINIDYLTKLVSDVKQMYTQHGGVRPFGVALIIGGID-RGKTPKLLMTEPSGQFMPYYAVAIGQGGYTATEYFEKNYREDLNMQDTILLGIRALASTLKPGEKLAPSNIEVGFADVDSGM 226          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSMA_SULAC (Proteasome subunit alpha OS=Sulfolobus acidocaldarius GN=psmA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.453e-27
Identity = 64/149 (42.95%), Postives = 94/149 (63.09%), Query Frame = -3
Query:  306 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVESGGK 749
            D   + KI  LD+H+    AGL +D R+LI+ AR +   HRL  ++P+++EY+T+ I+ ++Q YTQ GGVRPFG++ ++ G D     P L  T+PSG F  + A A G+   +  E+LEKNYKE    Q TI LA+RAL+  ++ G K
Sbjct:   62 DVDGIEKIFMLDDHVGCTFAGLASDGRILIDYARSQALQHRLIYDEPISIEYLTKVISDVKQAYTQHGGVRPFGVALIVGGIDK-GKQPKLLMTEPSGQFMPYYAVAIGQGGYTATEYLEKNYKEDLDIQSTILLALRALMATLKPGEK 209          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSA2_XENLA (Proteasome subunit alpha type-2 OS=Xenopus laevis GN=psma2 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.479e-27
Identity = 71/172 (41.28%), Postives = 100/172 (58.14%), Query Frame = -3
Query:  243 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEI 749
            D +S  K+  +  HI +  +G+  D RVL+ RAR   Q + L  ++P+    + + +A + Q+YTQSGGVRPFG+S LI G+D   G P L+Q+DPSG + AWKA A G+N  + + FLEK Y E    ++ I  AI  L E  E      NIEV +   E G K+L  AE+
Sbjct:   58 DEQSAHKVEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWD--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGI-CNEAGFKRLTPAEV 226          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSJ (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. japonica GN=Os06g0167600 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.228e-27
Identity = 57/145 (39.31%), Postives = 96/145 (66.21%), Query Frame = -3
Query:  315 SRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES 746
            SRS  K+  +D+H+A A AG+ +DA +L+N AR+  Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+++Y++  + +E + LA++ L + ++S
Sbjct:   59 SRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDS 202          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSI (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. indica GN=OsI_021067 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.228e-27
Identity = 57/145 (39.31%), Postives = 96/145 (66.21%), Query Frame = -3
Query:  315 SRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES 746
            SRS  K+  +D+H+A A AG+ +DA +L+N AR+  Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+++Y++  + +E + LA++ L + ++S
Sbjct:   59 SRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDS 202          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSJ (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. japonica GN=PAC1 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.228e-27
Identity = 57/145 (39.31%), Postives = 96/145 (66.21%), Query Frame = -3
Query:  315 SRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES 746
            SRS  K+  +D+H+A A AG+ +DA +L+N AR+  Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+++Y++  + +E + LA++ L + ++S
Sbjct:   59 SRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDS 202          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSI (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. indica GN=OsI_021120 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.228e-27
Identity = 57/145 (39.31%), Postives = 96/145 (66.21%), Query Frame = -3
Query:  315 SRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES 746
            SRS  K+  +D+H+A A AG+ +DA +L+N AR+  Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+++Y++  + +E + LA++ L + ++S
Sbjct:   59 SRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDS 202          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSA2_RAT (Proteasome subunit alpha type-2 OS=Rattus norvegicus GN=Psma2 PE=1 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 4.228e-27
Identity = 71/172 (41.28%), Postives = 101/172 (58.72%), Query Frame = -3
Query:  243 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEI 749
            D RSV K+  +  HI L  +G+  D RVL++RAR   Q + L  ++P+    + + +A + Q+YTQSGGVRPFG+S LI G++   G P L+Q+DPSG + AWKA A G+N  + + FLEK Y E    ++ I  AI  L E  E      NIEV +   E G ++L   E+
Sbjct:   58 DERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGI-CNEAGFRRLTPTEV 226          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSA2_MOUSE (Proteasome subunit alpha type-2 OS=Mus musculus GN=Psma2 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.228e-27
Identity = 71/172 (41.28%), Postives = 101/172 (58.72%), Query Frame = -3
Query:  243 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEI 749
            D RSV K+  +  HI L  +G+  D RVL++RAR   Q + L  ++P+    + + +A + Q+YTQSGGVRPFG+S LI G++   G P L+Q+DPSG + AWKA A G+N  + + FLEK Y E    ++ I  AI  L E  E      NIEV +   E G ++L   E+
Sbjct:   58 DERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGI-CNEAGFRRLTPTEV 226          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSA2_HUMAN (Proteasome subunit alpha type-2 OS=Homo sapiens GN=PSMA2 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.228e-27
Identity = 71/172 (41.28%), Postives = 101/172 (58.72%), Query Frame = -3
Query:  243 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEI 749
            D RSV K+  +  HI L  +G+  D RVL++RAR   Q + L  ++P+    + + +A + Q+YTQSGGVRPFG+S LI G++   G P L+Q+DPSG + AWKA A G+N  + + FLEK Y E    ++ I  AI  L E  E      NIEV +   E G ++L   E+
Sbjct:   58 DERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGI-CNEAGFRRLTPTEV 226          
The following BLAST results are available for this feature:
BLAST of CV887275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
PSMA_SULTO1.453e-2739.76Proteasome subunit alpha OS=Sulfolobus tokodaii GN... [more]
PSMA_SULAC1.453e-2742.95Proteasome subunit alpha OS=Sulfolobus acidocaldar... [more]
PSA2_XENLA2.479e-2741.28Proteasome subunit alpha type-2 OS=Xenopus laevis ... [more]
PSA4B_ORYSJ4.228e-2739.31Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4B_ORYSI4.228e-2739.31Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4A_ORYSJ4.228e-2739.31Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSA4A_ORYSI4.228e-2739.31Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSA2_RAT4.228e-2741.28Proteasome subunit alpha type-2 OS=Rattus norvegic... [more]
PSA2_MOUSE4.228e-2741.28Proteasome subunit alpha type-2 OS=Mus musculus GN... [more]
PSA2_HUMAN4.228e-2741.28Proteasome subunit alpha type-2 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030C11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887275 ID=CV887275; Name=CV887275; organism=Citrus sinensis; type=EST; length=751bp
TGACCATATAAGAAAATTTAAGCTGGCAATAATCTGGTGCTCTGTTATAT
CTTTTGAATGCAAATCTAAAAGCATATAAAACTTAACCACAAAAAAAGCA
TACTAAAATTCTGAAAGGTGAAAAACAACAGGCAATGGAAAAAACAGAAG
CCAGAACTAAAAACTCATGTTTCCTTGGGAGGTCCCTTCTTTGCAGCCTC
AGCGGCGGCCTTCTTTGCTTCAATCTCGGCTACCATGGCATCAATTTCAG
CTTCATCAAGCTGCTTCAGACCCTTCTCCCTTGTCATCACAGCAACTTCT
ATGTTTTTGCCCCCACTCTCAACAACCTCAAGTAATGCCCGAATTGCAAG
CTTTATAGTTTCTTGCCCGGAAGTTTCCTTATAGTTTTTCTCCAGAAACT
CCCTCATTGAATTAGAGTTTCTCCCAGTTGCATTAGCTTTCCAAGCAGAA
AATGTCCCAGAAGGATCTGTCTGATATAGTGATGGCACGCCAGTGTATGG
ATCAAAGCCCACAATCAGAGTAGAAAGACCAAATGGTCTCACACCACCGC
TTTGTGTGTACTTCTGCTGGAGACCTGCAATGTAACGAGTGATGTACTCA
ACAGTTACTGGGTCCTCAACAGTCAGCCTGTGGCTCTGACATTCTATTCG
AGCCCTGTTTATCAGTACACGAGCATCTGCTTTAAGTCCAGCACAGGCCA
ATGCAATATGATTATCCAAGCTGACAATCTTCCTCACTGATCTGGAGTCC
T
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