CV887275
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSMA_SULTO (Proteasome subunit alpha OS=Sulfolobus tokodaii GN=psmA PE=3 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 1.453e-27 Identity = 66/166 (39.76%), Postives = 101/166 (60.84%), Query Frame = -3 Query: 267 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 749 D S+ K+ LD+H+ + AGL +D R+LI+ AR + HRL ++P+ ++Y+T+ ++ ++Q YTQ GGVRPFG++ +I G D P L T+PSG F + A A G+ + E+ EKNY+E + Q+TI L IRAL ++ G K NIEV + G+ Sbjct: 62 DVDSIEKVFILDDHVGCSFAGLASDGRILIDYARSQALQHRLIYDEPINIDYLTKLVSDVKQMYTQHGGVRPFGVALIIGGID-RGKTPKLLMTEPSGQFMPYYAVAIGQGGYTATEYFEKNYREDLNMQDTILLGIRALASTLKPGEKLAPSNIEVGFADVDSGM 226
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSMA_SULAC (Proteasome subunit alpha OS=Sulfolobus acidocaldarius GN=psmA PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.453e-27 Identity = 64/149 (42.95%), Postives = 94/149 (63.09%), Query Frame = -3 Query: 306 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVESGGK 749 D + KI LD+H+ AGL +D R+LI+ AR + HRL ++P+++EY+T+ I+ ++Q YTQ GGVRPFG++ ++ G D P L T+PSG F + A A G+ + E+LEKNYKE Q TI LA+RAL+ ++ G K Sbjct: 62 DVDGIEKIFMLDDHVGCTFAGLASDGRILIDYARSQALQHRLIYDEPISIEYLTKVISDVKQAYTQHGGVRPFGVALIVGGIDK-GKQPKLLMTEPSGQFMPYYAVAIGQGGYTATEYLEKNYKEDLDIQSTILLALRALMATLKPGEK 209
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSA2_XENLA (Proteasome subunit alpha type-2 OS=Xenopus laevis GN=psma2 PE=2 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 2.479e-27 Identity = 71/172 (41.28%), Postives = 100/172 (58.14%), Query Frame = -3 Query: 243 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEI 749 D +S K+ + HI + +G+ D RVL+ RAR Q + L ++P+ + + +A + Q+YTQSGGVRPFG+S LI G+D G P L+Q+DPSG + AWKA A G+N + + FLEK Y E ++ I AI L E E NIEV + E G K+L AE+ Sbjct: 58 DEQSAHKVEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWD--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGI-CNEAGFKRLTPAEV 226
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSJ (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. japonica GN=Os06g0167600 PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 4.228e-27 Identity = 57/145 (39.31%), Postives = 96/145 (66.21%), Query Frame = -3 Query: 315 SRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES 746 SRS K+ +D+H+A A AG+ +DA +L+N AR+ Q + L+ ++P+ VE + + + +Q YTQ GG+RPFG+S L G+D + G LY +DPSG +S WKA A G NS + + L+++Y++ + +E + LA++ L + ++S Sbjct: 59 SRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDS 202
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSI (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. indica GN=OsI_021067 PE=1 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 4.228e-27 Identity = 57/145 (39.31%), Postives = 96/145 (66.21%), Query Frame = -3 Query: 315 SRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES 746 SRS K+ +D+H+A A AG+ +DA +L+N AR+ Q + L+ ++P+ VE + + + +Q YTQ GG+RPFG+S L G+D + G LY +DPSG +S WKA A G NS + + L+++Y++ + +E + LA++ L + ++S Sbjct: 59 SRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDS 202
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSJ (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. japonica GN=PAC1 PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 4.228e-27 Identity = 57/145 (39.31%), Postives = 96/145 (66.21%), Query Frame = -3 Query: 315 SRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES 746 SRS K+ +D+H+A A AG+ +DA +L+N AR+ Q + L+ ++P+ VE + + + +Q YTQ GG+RPFG+S L G+D + G LY +DPSG +S WKA A G NS + + L+++Y++ + +E + LA++ L + ++S Sbjct: 59 SRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDS 202
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSI (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. indica GN=OsI_021120 PE=1 SV=2) HSP 1 Score: 121.709 bits (304), Expect = 4.228e-27 Identity = 57/145 (39.31%), Postives = 96/145 (66.21%), Query Frame = -3 Query: 315 SRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES 746 SRS K+ +D+H+A A AG+ +DA +L+N AR+ Q + L+ ++P+ VE + + + +Q YTQ GG+RPFG+S L G+D + G LY +DPSG +S WKA A G NS + + L+++Y++ + +E + LA++ L + ++S Sbjct: 59 SRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDS 202
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSA2_RAT (Proteasome subunit alpha type-2 OS=Rattus norvegicus GN=Psma2 PE=1 SV=3) HSP 1 Score: 121.709 bits (304), Expect = 4.228e-27 Identity = 71/172 (41.28%), Postives = 101/172 (58.72%), Query Frame = -3 Query: 243 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEI 749 D RSV K+ + HI L +G+ D RVL++RAR Q + L ++P+ + + +A + Q+YTQSGGVRPFG+S LI G++ G P L+Q+DPSG + AWKA A G+N + + FLEK Y E ++ I AI L E E NIEV + E G ++L E+ Sbjct: 58 DERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGI-CNEAGFRRLTPTEV 226
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSA2_MOUSE (Proteasome subunit alpha type-2 OS=Mus musculus GN=Psma2 PE=1 SV=2) HSP 1 Score: 121.709 bits (304), Expect = 4.228e-27 Identity = 71/172 (41.28%), Postives = 101/172 (58.72%), Query Frame = -3 Query: 243 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEI 749 D RSV K+ + HI L +G+ D RVL++RAR Q + L ++P+ + + +A + Q+YTQSGGVRPFG+S LI G++ G P L+Q+DPSG + AWKA A G+N + + FLEK Y E ++ I AI L E E NIEV + E G ++L E+ Sbjct: 58 DERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGI-CNEAGFRRLTPTEV 226
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSA2_HUMAN (Proteasome subunit alpha type-2 OS=Homo sapiens GN=PSMA2 PE=1 SV=2) HSP 1 Score: 121.709 bits (304), Expect = 4.228e-27 Identity = 71/172 (41.28%), Postives = 101/172 (58.72%), Query Frame = -3 Query: 243 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEI 749 D RSV K+ + HI L +G+ D RVL++RAR Q + L ++P+ + + +A + Q+YTQSGGVRPFG+S LI G++ G P L+Q+DPSG + AWKA A G+N + + FLEK Y E ++ I AI L E E NIEV + E G ++L E+ Sbjct: 58 DERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGI-CNEAGFRRLTPTEV 226 The following BLAST results are available for this feature:
BLAST of CV887275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 166
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Sequences
The
following sequences are available for this feature:
EST sequence >CV887275 ID=CV887275; Name=CV887275; organism=Citrus sinensis; type=EST; length=751bpback to top |