CV887275

Overview
NameCV887275
Unique NameCV887275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSA2_DICDI (Proteasome subunit alpha type-2 OS=Dictyostelium discoideum GN=psmA2 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.674e-26
Identity = 70/175 (40.00%), Postives = 104/175 (59.43%), Query Frame = -3
Query:  243 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQETIKLAIRALLEVVESGGK------NIEVAVMTREKGLKQLDEAEI 749
            D  SV+KI  +  +I L  AG+  D+RVLI +AR E + +    ++ + V  + R +A + Q++TQSGGVRPFG+S L+ GFD     P LYQ DPSG++ AWKA A G+N  S + FLEK Y   S    I+ AI+  L  ++ G +      N+E+A++ + +  K L  A+I
Sbjct:   56 DVTSVQKISMITENIGLVYAGMGPDSRVLIKKARKESEKYYKQYKEKIPVLQLVRELASIMQEFTQSGGVRPFGVSLLVAGFDEKG--PHLYQVDPSGSYFAWKATAIGKNMVSSKTFLEKRY---SDDLEIEDAIQTALITIKEGFETQLTEFNMELAIIGKNQEFKILTPAQI 225          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSMA_METMP (Proteasome subunit alpha OS=Methanococcus maripaludis GN=psmA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.105e-26
Identity = 71/176 (40.34%), Postives = 107/176 (60.80%), Query Frame = -3
Query:  231 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKET-SGQETIKLAIRALLEVVES-GGKNIEVAVMTRE-KGLKQLDEAEIDAMV 749
            D  S+ KI  +D+HI  A +GL ADARVLI+RARIE Q +R++  + +TVE + + I  ++Q YTQ GG RPFGL+ LI G D ++    L++TDPSG    +KA A G       E LE  Y E  +  E ++LA+ AL +  E    +NI++A++    K ++++   EI+ +V
Sbjct:   62 DVSSIEKIFQIDDHIVAATSGLVADARVLIDRARIEAQMNRVSYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSA--RLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVSEGMELALYALSKTTEELKPENIDMAIIKDSGKLVEKISVDEIEKIV 235          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSA4_CAEEL (Proteasome subunit alpha type-4 OS=Caenorhabditis elegans GN=pas-3 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 6.105e-26
Identity = 65/178 (36.52%), Postives = 105/178 (58.99%), Query Frame = -3
Query:  231 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQETIKLAIRALLEV--VESGGKNIEVAVMTREKG---LKQLDEAEIDAMV 749
            DS    K+  L ++I+   AG+ ADA +LIN  R    S+R +  + + VE + + +   +Q+YTQ GG RPFG+S L +G+D + G   LYQ+DPSG ++ WKA   G N  +    L++ YK  + +E  +LAI+ L +   V+   + +E+AV+TR  G   L++L   E+DA++
Sbjct:   58 DSVMTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGY-QLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEYKSPNLEEAKQLAIKVLWKTLDVKLASEKVEMAVLTRRDGKTVLEELTTKEVDALI 234          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSMA_METVS (Proteasome subunit alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=psmA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.973e-26
Identity = 67/157 (42.68%), Postives = 97/157 (61.78%), Query Frame = -3
Query:  285 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKET-SGQETIKLAIRALLEVVES-GGKNIEVAVM 749
            D  S+ KI  +D+HI  A +GL ADARVLI+RAR+E Q +R++  + +TVE + + I  ++Q YT  GG RPFGL+ LI G D ++    L++TDPSG    +KA A G       E LE+ Y E  S  E ++LAI AL +  E    +NI++A++
Sbjct:   62 DVSSIEKIFQIDDHIVAATSGLVADARVLIDRARVEAQVNRISYGEAITVEALAKKICDIKQAYTHHGGARPFGLALLITGIDRHSA--RLFETDPSGALIEYKATAIGSGRPVAMEILEEKYDENMSVSEGMELAIYALSKTTEELKPENIDMAIV 216          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSMA_METM7 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=psmA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.973e-26
Identity = 70/176 (39.77%), Postives = 107/176 (60.80%), Query Frame = -3
Query:  231 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKET-SGQETIKLAIRALLEVVES-GGKNIEVAVMTRE-KGLKQLDEAEIDAMV 749
            D  S+ KI  +D+HI  A +GL ADARVLI+RAR+E Q +R++  + +TVE + + I  ++Q YTQ GG RPFGL+ LI G D ++    L++TDPSG    +KA A G       E LE  Y E  +  E ++LA+ AL +  E    +NI++A++    K ++++   EI+ +V
Sbjct:   62 DVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSA--RLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVNEGMELALYALSKTTEELKPENIDMAIVKDSGKLVEKISVDEIEKIV 235          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.973e-26
Identity = 70/176 (39.77%), Postives = 107/176 (60.80%), Query Frame = -3
Query:  231 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES-GGKNIEVAVMTRE-KGLKQLDEAEIDAMV 749
            D  S+ KI  +D+HI  A +GL ADARVLI+RAR+E Q +R++  + +TVE + + I  ++Q YTQ GG RPFGL+ LI G D ++    L++TDPSG    +KA A G       E LE  Y E  +  E ++LA+ AL +  E    +NI++A++    K ++++   EI+ +V
Sbjct:   62 DVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSA--RLFETDPSGALIEYKATAIGSGRPIAMEVLESKYSEDMTVNEGMELALYALSKTTEELKPENIDMAIVKDSGKLVEKISVDEIEKIV 235          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSMA_NATPD (Proteasome subunit alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=psmA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.041e-25
Identity = 69/173 (39.88%), Postives = 102/173 (58.96%), Query Frame = -3
Query:  237 SVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQET-IKLAIRALLEVVESG----GKNIEVAVMTREKGLKQLDEAEIDA 740
            SV KI   D+HI +A AG  ADAR LI+ AR + Q ++L  ++P+ VE +T+ +    Q+YTQ GG RPFG++ +I G +   G P LY+TDPSGT   W+A A G +   ++E+LE++Y E+   E  I LA+ AL  V +      G  +    +  + G  QL + EI+A
Sbjct:   65 SVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYDEPIGVETLTKAVTDHIQQYTQVGGARPFGVALIIGGIE--DGEPRLYETDPSGTPYEWQALAVGADRGDIQEYLEEHYSESLDTEAGIGLALEALASVNDDSLTPEGIGLATVTVDDDDGFSQLSDEEIEA 235          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSMA_METAC (Proteasome subunit alpha OS=Methanosarcina acetivorans GN=psmA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.041e-25
Identity = 68/177 (38.42%), Postives = 104/177 (58.76%), Query Frame = -3
Query:  231 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQE-TIKLAIRALLEVVES--GGKNIEVAVMTRE-KGLKQLDEAEIDAMV 749
            ++ S+ KI  +D HI  A +GL ADAR L++RAR+E Q +R++ ++P+ VE I++ I   +Q YTQ GGVRP+G + LI G D     P L++TDPSG    +KA A G   N++ E  E +Y+E    +  I L + AL +  E       +EV V++ E K  ++L   E++  V
Sbjct:   59 EAESIEKIFQIDEHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVD--DNKPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNMDAAILLGMDALYKAAEGKFDAGTLEVGVVSLEDKKFRKLGPEEVENYV 233          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSMA_METM6 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=psmA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.360e-25
Identity = 70/176 (39.77%), Postives = 106/176 (60.23%), Query Frame = -3
Query:  231 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETS-GQETIKLAIRALLEVVES-GGKNIEVAVMTRE-KGLKQLDEAEIDAMV 749
            D  S+ KI  +D+HI  A +GL ADARVLI+RAR+E Q +R++  + +TVE + + I  ++Q YTQ GG RPFGL+ LI G D ++    L++TDPSG    +KA A G       E LE  Y E     E ++LA+ AL +  E    +NI++A++    K ++++   EI+ +V
Sbjct:   62 DVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSA--RLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMIVSEGMELALYALSKTTEELKPENIDMAIVKDSGKLVEKISVDEIEKIV 235          
BLAST of CV887275 vs. ExPASy Swiss-Prot
Match: PSA2_TRYBB (Proteasome subunit alpha type-2 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.360e-25
Identity = 61/142 (42.96%), Postives = 86/142 (60.56%), Query Frame = -3
Query:  327 DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNY-KETSGQETIKLAIRALLE 749
            DS ++ K+ +LD+H+    +G+  D RVL++ AR  CQ +RLT  +P+ +  + R I+ L Q++TQSGGVRPFG S L+ G D       LYQ DPSGTF  WKA + G+ S   R FLEK Y  E   ++ +  A+  L E
Sbjct:   56 DSLTLHKVFALDDHVGCTYSGIGPDCRVLVDAARRACQRYRLTYHEPMPISQLVRQISFLFQEFTQSGGVRPFGCSLLVAGADSRGN--HLYQLDPSGTFWTWKATSIGKGSPDARTFLEKRYTNEMEIEDAVHTALLTLKE 195          
The following BLAST results are available for this feature:
BLAST of CV887275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
PSA2_DICDI4.674e-2640.00Proteasome subunit alpha type-2 OS=Dictyostelium d... [more]
PSMA_METMP6.105e-2640.34Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSA4_CAEEL6.105e-2636.52Proteasome subunit alpha type-4 OS=Caenorhabditis ... [more]
PSMA_METVS7.973e-2642.68Proteasome subunit alpha OS=Methanococcus vannieli... [more]
PSMA_METM77.973e-2639.77Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METM57.973e-2639.77Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_NATPD1.041e-2539.88Proteasome subunit alpha OS=Natronomonas pharaonis... [more]
PSMA_METAC1.041e-2538.42Proteasome subunit alpha OS=Methanosarcina acetivo... [more]
PSMA_METM61.360e-2539.77Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSA2_TRYBB1.360e-2542.96Proteasome subunit alpha type-2 OS=Trypanosoma bru... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030C11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887275 ID=CV887275; Name=CV887275; organism=Citrus sinensis; type=EST; length=751bp
TGACCATATAAGAAAATTTAAGCTGGCAATAATCTGGTGCTCTGTTATAT
CTTTTGAATGCAAATCTAAAAGCATATAAAACTTAACCACAAAAAAAGCA
TACTAAAATTCTGAAAGGTGAAAAACAACAGGCAATGGAAAAAACAGAAG
CCAGAACTAAAAACTCATGTTTCCTTGGGAGGTCCCTTCTTTGCAGCCTC
AGCGGCGGCCTTCTTTGCTTCAATCTCGGCTACCATGGCATCAATTTCAG
CTTCATCAAGCTGCTTCAGACCCTTCTCCCTTGTCATCACAGCAACTTCT
ATGTTTTTGCCCCCACTCTCAACAACCTCAAGTAATGCCCGAATTGCAAG
CTTTATAGTTTCTTGCCCGGAAGTTTCCTTATAGTTTTTCTCCAGAAACT
CCCTCATTGAATTAGAGTTTCTCCCAGTTGCATTAGCTTTCCAAGCAGAA
AATGTCCCAGAAGGATCTGTCTGATATAGTGATGGCACGCCAGTGTATGG
ATCAAAGCCCACAATCAGAGTAGAAAGACCAAATGGTCTCACACCACCGC
TTTGTGTGTACTTCTGCTGGAGACCTGCAATGTAACGAGTGATGTACTCA
ACAGTTACTGGGTCCTCAACAGTCAGCCTGTGGCTCTGACATTCTATTCG
AGCCCTGTTTATCAGTACACGAGCATCTGCTTTAAGTCCAGCACAGGCCA
ATGCAATATGATTATCCAAGCTGACAATCTTCCTCACTGATCTGGAGTCC
T
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