CV887254

Overview
NameCV887254
Unique NameCV887254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length173
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.402e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.402e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.402e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_HELAN (Ubiquitin OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.402e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.402e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.402e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_COPCO (Ubiquitin OS=Coprinus congregatus PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.402e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_BRARA (Ubiquitin OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.402e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_AVESA (Ubiquitin OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.402e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_AVEFA (Ubiquitin OS=Avena fatua PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.402e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
The following BLAST results are available for this feature:
BLAST of CV887254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
UBIQ_LUPAL1.402e-17100.00Ubiquitin OS=Lupinus albus PE=3 SV=1[more]
UBIQ_LINUS1.402e-17100.00Ubiquitin OS=Linum usitatissimum PE=3 SV=1[more]
UBIQ_HORVU1.402e-17100.00Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1[more]
UBIQ_HELAN1.402e-17100.00Ubiquitin OS=Helianthus annuus PE=3 SV=1[more]
UBIQ_DESAN1.402e-17100.00Ubiquitin OS=Deschampsia antarctica PE=2 SV=1[more]
UBIQ_DAUCA1.402e-17100.00Ubiquitin OS=Daucus carota PE=3 SV=1[more]
UBIQ_COPCO1.402e-17100.00Ubiquitin OS=Coprinus congregatus PE=1 SV=1[more]
UBIQ_BRARA1.402e-17100.00Ubiquitin OS=Brassica rapa PE=3 SV=1[more]
UBIQ_AVESA1.402e-17100.00Ubiquitin OS=Avena sativa PE=1 SV=1[more]
UBIQ_AVEFA1.402e-17100.00Ubiquitin OS=Avena fatua PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030B11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887254 ID=CV887254; Name=CV887254; organism=Citrus sinensis; type=EST; length=173bp
TTTCGGCGAGATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCT
GGATCTTGGCCTTGACATTGTCGATGGTGTCCGATGATTCGACCTCTAGG
GTTATGGTCTTTCCCGTTAGGGTTTTCACGAAGATCTGCATGGCTGCAGA
TGAGGAGAGACCCAGCAAATCCT
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