CV887254

Overview
NameCV887254
Unique NameCV887254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length173
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_HORSE (Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.550e-16
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_GORGO (Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.550e-16
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_FELCA (Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.550e-16
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_DROME (Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.550e-16
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_CRIGR (Ubiquitin OS=Cricetulus griseus PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.550e-16
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.550e-16
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.550e-16
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.550e-16
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.550e-16
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.550e-16
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 44
The following BLAST results are available for this feature:
BLAST of CV887254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
UBIQ_HORSE1.550e-1695.45Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2[more]
UBIQ_GORGO1.550e-1695.45Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 S... [more]
UBIQ_FELCA1.550e-1695.45Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1[more]
UBIQ_DROME1.550e-1695.45Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1... [more]
UBIQ_CRIGR1.550e-1695.45Ubiquitin OS=Cricetulus griseus PE=3 SV=1[more]
UBIQ_CHICK1.550e-1695.45Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1[more]
UBIQ_CERCA1.550e-1695.45Ubiquitin OS=Ceratitis capitata PE=1 SV=1[more]
UBIQ_CAVPO1.550e-1695.45Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1[more]
UBIQ_CANFA1.550e-1695.45Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]
UBIQ_CAMDR1.550e-1695.45Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030B11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887254 ID=CV887254; Name=CV887254; organism=Citrus sinensis; type=EST; length=173bp
TTTCGGCGAGATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCT
GGATCTTGGCCTTGACATTGTCGATGGTGTCCGATGATTCGACCTCTAGG
GTTATGGTCTTTCCCGTTAGGGTTTTCACGAAGATCTGCATGGCTGCAGA
TGAGGAGAGACCCAGCAAATCCT
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