CV887254

Overview
NameCV887254
Unique NameCV887254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length173
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.550e-16
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.550e-16
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.024e-16
Identity = 41/44 (93.18%), Postives = 44/44 (100.00%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.644e-16
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.453e-16
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.453e-16
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITL+VE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.509e-16
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.509e-16
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_DICDI (Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.509e-16
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITLEVE SD I+NVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.890e-16
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLI 44
The following BLAST results are available for this feature:
BLAST of CV887254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
UBIQ_BOVIN1.550e-1695.45Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_ACACA1.550e-1695.45Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_TETPY2.024e-1693.18Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ... [more]
UBIQ_EUPEU2.644e-1693.18Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_TRYBB3.453e-1693.18Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_EIMBO3.453e-1693.18Ubiquitin OS=Eimeria bovis PE=2 SV=1[more]
UBIQ_STRPU4.509e-1693.18Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]
UBIQ_ENCCU4.509e-1693.18Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074... [more]
UBIQ_DICDI4.509e-1693.18Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1... [more]
UBIQ_LEIMA5.890e-1693.18Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030B11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887254 ID=CV887254; Name=CV887254; organism=Citrus sinensis; type=EST; length=173bp
TTTCGGCGAGATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCT
GGATCTTGGCCTTGACATTGTCGATGGTGTCCGATGATTCGACCTCTAGG
GTTATGGTCTTTCCCGTTAGGGTTTTCACGAAGATCTGCATGGCTGCAGA
TGAGGAGAGACCCAGCAAATCCT
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