CV887254

Overview
NameCV887254
Unique NameCV887254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length173
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.312e-15
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTITL+VE SD+IDNVK KIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.923e-15
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV887254 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.149e-11
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = -3 
Query:   10 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 141
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLI 44
The following BLAST results are available for this feature:
BLAST of CV887254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
UBIQ_PHYIN1.312e-1590.91Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]
UBIQ_LEITA2.923e-1590.91Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIL_NPVOP1.149e-1175.00Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030B11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887254 ID=CV887254; Name=CV887254; organism=Citrus sinensis; type=EST; length=173bp
TTTCGGCGAGATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCT
GGATCTTGGCCTTGACATTGTCGATGGTGTCCGATGATTCGACCTCTAGG
GTTATGGTCTTTCCCGTTAGGGTTTTCACGAAGATCTGCATGGCTGCAGA
TGAGGAGAGACCCAGCAAATCCT
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