CV887237

Overview
NameCV887237
Unique NameCV887237
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887237 vs. ExPASy Swiss-Prot
Match: RL31_SYNJB (50S ribosomal protein L31 OS=Synechococcus sp. GN=rpmE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 37/66 (56.06%), Postives = 50/66 (75.76%), Query Frame = -2
Query:  230 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDAD-QVEKFRQKFG 424
            KK +HPQ+Y +AKV CNGE+VMT G T+ E  VDVWSGNH F+ G  S  ++D++ +VEKF +K+G
Sbjct:    3 KKGLHPQWYPEAKVICNGEVVMTVGSTKPELKVDVWSGNHPFFTG--SQKIIDSEGRVEKFMRKYG 66          
BLAST of CV887237 vs. ExPASy Swiss-Prot
Match: RL31_PROM4 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9211) GN=rpmE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = -2
Query:  230 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 424
            K+DIHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KEDIHPTWYPDAKVICNGEVVMTTGSTQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CV887237 vs. ExPASy Swiss-Prot
Match: RL31_SYNS9 (50S ribosomal protein L31 OS=Synechococcus sp. (strain CC9902) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.265e-14
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = -2
Query:  230 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 424
            K DIHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSDIHPTWYPDAKVICNGEVVMTTGATQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CV887237 vs. ExPASy Swiss-Prot
Match: RL31_SYNJA (50S ribosomal protein L31 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.265e-14
Identity = 37/66 (56.06%), Postives = 50/66 (75.76%), Query Frame = -2
Query:  230 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDAD-QVEKFRQKFG 424
            KK IHPQ+Y +AKV CNGE+VMT G T+ E  VDVWSGNH F+ G  S  ++D++ +V+KF +K+G
Sbjct:    3 KKGIHPQWYPEAKVICNGEVVMTVGSTKPELKVDVWSGNHPFFTG--SQKIIDSEGRVDKFMRKYG 66          
BLAST of CV887237 vs. ExPASy Swiss-Prot
Match: RL31_PROMM (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9313) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.265e-14
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = -2
Query:  230 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 424
            K DIHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KPDIHPNWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CV887237 vs. ExPASy Swiss-Prot
Match: RL31_PROM3 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9303) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.265e-14
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = -2
Query:  230 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 424
            K DIHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KPDIHPNWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CV887237 vs. ExPASy Swiss-Prot
Match: RL31_SYNSC (50S ribosomal protein L31 OS=Synechococcus sp. (strain CC9605) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.652e-14
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = -2
Query:  230 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 424
            K DIHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KPDIHPTWYPDAKVICNGEVVMTTGATQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CV887237 vs. ExPASy Swiss-Prot
Match: RL31_SYNS3 (50S ribosomal protein L31 OS=Synechococcus sp. (strain CC9311) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.652e-14
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = -2
Query:  230 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 424
            K DIHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KPDIHPTWYPDAKVICNGEVVMTTGSTQPEINVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CV887237 vs. ExPASy Swiss-Prot
Match: RL31_SYNPX (50S ribosomal protein L31 OS=Synechococcus sp. (strain WH8102) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.652e-14
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = -2
Query:  230 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 424
            K DIHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KPDIHPTWYPDAKVICNGEVVMTTGSTQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CV887237 vs. ExPASy Swiss-Prot
Match: RL31_CYAP8 (50S ribosomal protein L31 OS=Cyanothece sp. (strain PCC 8801) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.652e-14
Identity = 35/79 (44.30%), Postives = 53/79 (67.09%), Query Frame = -2
Query:  188 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFGGLSEIMEIPVLKGE 424
            K DIHP +Y +AK+ CNGE+VMT G TQ E  V+VWSGNH FY G +  +  +  ++++F++++G L +    P  KG+
Sbjct:    3 KADIHPTWYPEAKIICNGEVVMTVGSTQPEIHVEVWSGNHPFYTGTQKMIDTEG-RIDRFQKRYGNLGKGGSKPNKKGD 80          
The following BLAST results are available for this feature:
BLAST of CV887237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL31_SYNJB9.685e-1556.0650S ribosomal protein L31 OS=Synechococcus sp. GN=... [more]
RL31_PROM49.685e-1555.3850S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_SYNS91.265e-1455.3850S ribosomal protein L31 OS=Synechococcus sp. (st... [more]
RL31_SYNJA1.265e-1456.0650S ribosomal protein L31 OS=Synechococcus sp. (st... [more]
RL31_PROMM1.265e-1455.3850S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_PROM31.265e-1455.3850S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_SYNSC1.652e-1455.3850S ribosomal protein L31 OS=Synechococcus sp. (st... [more]
RL31_SYNS31.652e-1455.3850S ribosomal protein L31 OS=Synechococcus sp. (st... [more]
RL31_SYNPX1.652e-1455.3850S ribosomal protein L31 OS=Synechococcus sp. (st... [more]
RL31_CYAP81.652e-1444.3050S ribosomal protein L31 OS=Cyanothece sp. (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_030B03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887237 ID=CV887237; Name=CV887237; organism=Citrus sinensis; type=EST; length=485bp
CAAACGCATGAAAAAGATAATTTGATAATAATGTTTGTCGTTCAAATATC
AACACATCATTCGATCAAATAAAATCCATCCACTCACAAACATTCCCCAA
TTACCTCAAAAACAACGTCGTACCAAATTTCTACTTCTTCTTGCCACCTT
TAGAGGCCGCGGACTTGCGCTTAGGCGGCAACACAATCTCTCCTTTAAGC
ACGGGAATTTCCATAATCTCAGACAATCCTCCGAACTTCTGACGGAACTT
CTCGACTTGGTCGGCGTCGACGACAACAGCAGAGCGGCCGCCGAGGTAAA
ACGCATGGTTTCCCGACCAGACATCCACCACGTACTCCTTCTGGGTCCCA
CCCGTCGTCATTACGAGCTCACCGTTACAGTACACCTTTGCATCCTCGTA
GAATTGAGGGTGTATGTCCTTCTTTCGACACGTCACCACCCGGGTCCTGT
AACCACTGCCCGTTGCTGCACAGTTCTTCACCTTT
back to top