CX044032

Overview
NameCX044032
Unique NameCX044032
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX044032 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.148e-32
Identity = 61/146 (41.78%), Postives = 92/146 (63.01%), Query Frame = -2 
Query:  302 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYE-----TTARSWT 724
            A +R++++ K +Q+DPP   SA PVA+++  W A I+GP ++P+  G F + + F   YP KPP V F +++FHPN+ S+G +CLDIL+ +WSP   ++ +L S+ SLL DPN   P   E + +YK  R +YE     T   SWT
Sbjct:    5 ARRRLMRDFKRMQQDPPQGVSASPVADNVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEKRVRDTVEASWT 150
[Close]
BLAST of CX044032 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.195e-31
Identity = 61/145 (42.07%), Postives = 92/145 (63.45%), Query Frame = -2 
Query:  305 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKY-----ETTARSW 724
            A +R++++ K +Q DPP   SA PV +++  W A I+GP D+P+  G F + + F   YP KPP+V F +++FHPN+ + G +CLDIL+ +WSP   ++ VL SI SLL DPN   P   E +++YK +R +Y     ET  +SW
Sbjct:    5 ARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRETVEKSW 149
[Close]
BLAST of CX044032 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.560e-31
Identity = 60/145 (41.38%), Postives = 93/145 (64.14%), Query Frame = -2 
Query:  305 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKY-----ETTARSW 724
            A +R++++ K +Q+DPP+  SA P+ +++  W A I+GP D+P+  G F + + F   YP KPP+V F +++FHPN+ ++G +CLDIL+ +WSP   +S +L S+ SLL DPN   P   E A++YK  R+ Y     ET   SW
Sbjct:    5 ARRRLMRDFKRMQQDPPSGVSASPLPDNVMKWNAVIIGPSDTPFEDGTFRLLLSFDEQYPNKPPQVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSVQSLLNDPNISSPANVEAANLYKDHRSLYVKRVRETVENSW 149
[Close]
BLAST of CX044032 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.038e-31
Identity = 59/134 (44.03%), Postives = 88/134 (65.67%), Query Frame = -2 
Query:  323 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYE 724
            A +R++++ K LQ+DPP   S  P   ++  W A I GP  +P+  G F +TI F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:    5 ARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138
[Close]
BLAST of CX044032 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.038e-31
Identity = 59/134 (44.03%), Postives = 88/134 (65.67%), Query Frame = -2 
Query:  323 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYE 724
            A +R++++ K LQ+DPP   S  P   ++  W A I GP  +P+  G F +TI F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:    5 ARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138
[Close]
BLAST of CX044032 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 2.038e-31
Identity = 61/145 (42.07%), Postives = 91/145 (62.76%), Query Frame = -2 
Query:  305 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKY-----ETTARSW 724
            A +R++++ K +Q DPP   SA PV +++  W A I+GP D+P+  G F + +HF   YP KPP V F +++FHPN+ + G +CLDIL+ +WSP   ++ VL SI SLL DPN       E +++YK +R +Y     ET  +SW
Sbjct:    5 ARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVRETVEKSW 149
[Close]
BLAST of CX044032 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.038e-31
Identity = 60/147 (40.82%), Postives = 93/147 (63.27%), Query Frame = -2 
Query:  299 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKY-----ETTARSWTQ 724
            A +R++++ K +Q+D P+  SA P+ +++  W A I+GP D+P+  G F + + F   YP KPP V F +++FHPN+ ++G +CLDIL+ +WSP   +S +L SI SLL DPN   P   E A++YK  R++Y     ET   SW +
Sbjct:    5 AKRRLMRDFKRMQQDAPSGVSASPLPDNVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRETVENSWNE 151
[Close]
BLAST of CX044032 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.662e-31
Identity = 58/134 (43.28%), Postives = 87/134 (64.93%), Query Frame = -2 
Query:  323 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYE 724
            A +R++++ K LQ+DPP   S  P   ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138
[Close]
BLAST of CX044032 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.662e-31
Identity = 58/134 (43.28%), Postives = 87/134 (64.93%), Query Frame = -2 
Query:  323 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYE 724
            A +R++++ K LQ+DPP   S  P   ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138
[Close]
BLAST of CX044032 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.662e-31
Identity = 58/134 (43.28%), Postives = 87/134 (64.93%), Query Frame = -2 
Query:  323 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYE 724
            A +R++++ K LQ+DPP   S  P   ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138
The following BLAST results are available for this feature:
BLAST of CX044032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC2_YARLI9.148e-3241.78Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBC2_NECHA1.195e-3142.07Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]
UBC2_CANAL1.560e-3141.38Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]
UBE2A_MOUSE2.038e-3144.03Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN2.038e-3144.03Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBC2_NEUCR2.038e-3142.07Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC2_DEBHA2.038e-3140.82Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBE2B_RAT2.662e-3143.28Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT2.662e-3143.28Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE2.662e-3143.28Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14H12_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14H12-P24-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044032 ID=CX044032; Name=CX044032; organism=Citrus sinensis; type=EST; length=725bp
TTTTTTTTTTTTTTTTTCTATAAAGAAAGATTTTTATCATTCAGAATGGA
CGTACAAATTTGGCTGACCAAGTGACATTATCAAAACACATTTGATTGAC
CAAAGTGACATTATCCATACAACAATTAAGAAGCAACCCGTTTCTCCTTT
CCAATTCGGGGGATGTAGTGGACCTTTCTTATGGTCCACTTTTTAGGATT
GAACAGACAGAATATTCATACATTAACTCGAAACCAGAATTAAAAAGAAA
AGGAACCCCCTCACACACCATAACCCAGGTTTAGCCCATGGCATACTTCT
GGGTCCAGCTCCTTGCAGTTGTCTCGTACTTGTTCCTGTCGGTCTTGTAC
ATGTGAGCAATTTCTGGTACCAACGGATCATCGGGATTTGGATCCGTCAA
TAATGAACAGATTGATAGCAACACCTTGGAAATGGTAAGAGCAGGACTCC
ATTGTTCCTTCAAGATGTCAAGGCAAATGCTCCCATTGCTATTTATGTTA
GGATGAAATACCTTTGTCCTGAATGCTACCTTGGGAGGCTTGAATGGATA
GTCTGGGGGAAAATGGATGGTAACTAGAAAAACACCCCCAGCATACGGAC
TATCTGGAGGACCCATGATTGTCGCCTGCCAATGAAACATGTCTTCAGCA
ACAGGACCGGCACTGCATGATGTAGGAGGATCCTTCTGCAAATCTTTGAG
CTCCTTCAAGATCCGTTTCGACGCC
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