CV887231

Overview
NameCV887231
Unique NameCV887231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887231 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 8.117e-60
Identity = 112/223 (50.22%), Postives = 142/223 (63.68%), Query Frame = 1
Query:  109 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQ 774
            W  A A++Y              +G+L   GYG  T  LSTALF  G +CG C+E+KCV+D ++C PG SI VTATNFC          GG CNPP  HF L    FE+IA +KAG++P+ YRRV C R GG+RF + G S+F  VLI+NVGGAGDVR+V IKG+ + W  M RNWGQ W  NS   GQ LSF++T+SDG T+ + NV P  W FG+T++G Q
Sbjct:   33 WRSAKASYYAADPEDAIGGACG-FGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGTSIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKGTESGWLSMGRNWGQIWHINSDFRGQPLSFELTSSDGKTLTNYNVVPKEWDFGKTYTGKQ 254          
BLAST of CV887231 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.817e-58
Identity = 112/225 (49.78%), Postives = 142/225 (63.11%), Query Frame = 1
Query:  106 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWC-RPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQY-KAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSR-TDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFS 765
            GW  AHAT+Y              Y N Y  G+G +TAALS  LF +G SCG C++++C    DP+WC R  ++ VTATNFC           GWCN P+ HFD+S P F +IA+    GIVPV YRRV C R+GG+RFT+ G   FN+V+I+NVGG G VR+V+++GS+   W  M+RNWG NWQS+  L GQ LSFKVT +D  T    NV P+ W FGQTFS
Sbjct:   26 GWIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRGAAVTVTATNFCPTNNN-----NGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSWWFGQTFS 245          
BLAST of CV887231 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 224.172 bits (570), Expect = 7.597e-58
Identity = 114/221 (51.58%), Postives = 139/221 (62.90%), Query Frame = 1
Query:  109 WTDAHATFYXXXXXXXXXXXXXX-YGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSG 768
            W DA A +Y               YG+L   GYG  TAALSTALFN+G SCGAC+EI C  +P+ C  GSI +TAT+ C            WC  P +HFDLS P+F +IAQ KA +VPV YRRVPC++ GG++F + G+     +L  NVGGAGD+ AVS KGS+T W  MSR WGQNW +N  L GQS+S +VTTSDG T    +V PA W FGQTF G
Sbjct:   45 WYDARAAYYGDIHGGGTELEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGSIKITATDLCPPG-------SAWCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFTDVMPASWGFGQTFDG 258          
BLAST of CV887231 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.597e-58
Identity = 111/222 (50.00%), Postives = 141/222 (63.51%), Query Frame = 1
Query:  109 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCV--NDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFS 765
            W    ATFY              YGNLY + YG N AALST LFN+G SCG C+ I C     P WC+ G +I VT TN+           GGWCN  + +FD+SQP +E I  Y AGIVP+ Y++V C R GG+RF ING +YF LVL+TN+ G+G + ++S+KGS T W  M+RNWG NWQ  + L GQ+LSF VT++ G T+V ++  PAGWSFGQTFS
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 233          
BLAST of CV887231 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 8.400e-57
Identity = 107/201 (53.23%), Postives = 133/201 (66.17%), Query Frame = 1
Query:  178 YGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGS--IFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQ 774
            YG+L    YG  TA +S ALF  G +CG C+E++CVN   WC  GS  + VTAT+FC          GGWCN P++HF++S+  F ++A+ KA IVPV +RRV C R GG+RFTI G + F  VLITNV   G+V AV +KGSRT W PM RNWGQNWQ ++ L GQ LSF+VT   G TVV+ +VAP  W F QTF G Q
Sbjct:   57 YGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRGQPLSFEVTGGRGRTVVAYSVAPPDWMFAQTFEGKQ 257          
BLAST of CV887231 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.111e-56
Identity = 110/224 (49.11%), Postives = 142/224 (63.39%), Query Frame = 1
Query:  109 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGS--IFVTATNFCXXXXXXXXXXGG--WCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIK-GSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTT-SDGHTVVSNNVAPAGWSFGQTF 762
            WT AHATFY              YGNLY+ GYGT+TAALST LF +G  CG C++++CV     C  GS  I VTATN C          GG  WCNPP+ HFDLS+P F ++A ++AGIVPV YRRVPC+R GG+RF + G+ Y+ L  + NV GAGDV  + +K G    W  MS NWG ++Q+ + L GQ+LSFKVT+ + G T+++  V PA W FG T+
Sbjct:   37 WTPAHATFYGDETASETMGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASWCFGLTY 259          
BLAST of CV887231 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.751e-54
Identity = 101/201 (50.25%), Postives = 131/201 (65.17%), Query Frame = 1
Query:  178 YGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGS--IFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQ 774
            YG+L    +   +A LS  LFN G SCGAC E++CVN  RWC  GS  + VTAT+FC          GGWCN P++H +LS   F  IA+ +A ++P+ YRRV C R+GG+RF+++G S+F  VLI+NVG  G+V  V +KG  T W PM+RNWGQNW S+  L GQSLSF+VT   G T+ S +VAP  W FG T+ G Q
Sbjct:   53 YGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYWRFGMTYQGKQ 253          
BLAST of CV887231 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 4.047e-43
Identity = 94/229 (41.05%), Postives = 125/229 (54.59%), Query Frame = 1
Query:  109 WTDAHATFYXXXXXXXXXXXXXX--YGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGS--IFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIK--GSRTDWQPMSRNWGQNWQSNSYL-NGQSLSFKVTT--SDGHTVVSNNVAPAGWSFGQTFSG 768
            W D  ATFY                  N     Y T TAALST LF +G  CG C+E++CV  P WC PGS  + +T TN C          GGWCNPP+ HFD++ P F ++AQ  AGIVPV YRRVPC R GG+RF + G+ Y+ L+ + NVGGAGDV ++S+K  G    W   + NWG  +Q  + L N   L+ K+TT  +   T++ ++     W  G  + G
Sbjct:   52 WHDGSATFYGDPSGMGDDFGGACGYVSNDIVSLYSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTTYSTPQQTIIVSDAISPWWITGLCYQG 279          
BLAST of CV887231 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.426e-42
Identity = 90/219 (41.10%), Postives = 127/219 (57.99%), Query Frame = 1
Query:  109 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGS-RTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTF 762
            W D HATFY               G   ++GYG  TAA+S ALF+NG  CGAC+E+K  +        ++ VTATN                    +HFDL+ P F  IA+ K G+VPVSYR+V C R+GGI++TI G+  +N+V++ NVGGAGDV  +++KG+ R  W P+ R+WGQ W++ + L G+SL+F+V T D     S  VAP  W++  T+
Sbjct:   82 WVDGHATFYGGRDASGTTEGGAC-GYKDADGYGAMTAAVSPALFDNGAGCGACYELKGDSGK------TVVVTATNQAPPPVNGMKG---------EHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDWTYDNTY 284          
BLAST of CV887231 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.208e-24
Identity = 70/236 (29.66%), Postives = 108/236 (45.76%), Query Frame = 1
Query:  100 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEG-YGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQ-------YKAGIVPVSYRRVPCSRKGGIRFTINGHS--YFNLVLITNVGGAGDVRAVSIKGSR--TDWQPMSRNWGQNWQSNSYLN---GQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTF 762
            G GW+   AT+Y              Y +   +  + +  AA   +LF NG  CG+C++IKC  + R C    + V  T+ C          GG C     HFD+S   F  +A          AG++ + Y+RVPC     + F ++  S  Y+  +L+    G GD+ AV I  +R    W+ M ++WG  W+ NS          S ++T+  G  +V+NNV P+GW  G T+
Sbjct:   42 GYGWSSGGATWYGGPQGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGN-RACSGRPVTVVITDSC---------PGGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILVQYANGDGDLAAVHIMEARGGGGWKAMQQSWGATWRLNSNTGKPLSPPFSIRLTSGSGKVLVANNVIPSGWQAGLTY 267          
The following BLAST results are available for this feature:
BLAST of CV887231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
EXP10_ORYSJ8.117e-6050.22Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH5.817e-5849.78Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP21_ARATH7.597e-5851.58Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP20_ORYSJ7.597e-5850.00Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP16_ORYSJ8.400e-5753.23Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP30_ORYSJ7.111e-5649.11Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP20_ARATH1.751e-5450.25Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP17_ORYSJ4.047e-4341.05Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ORYSJ3.426e-4241.10Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB5_ORYSJ4.208e-2429.66Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030A11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887231 ID=CV887231; Name=CV887231; organism=Citrus sinensis; type=EST; length=861bp
CTCTCTTACAAAAAGATACGCAAGCAAAAGGGTTTCAGGAACATGGCATT
TCTTGGGCTGCTGTTGTTGGGGATTCTTTCTTTAGTCTCATCTGTTTATG
GCCAGGGATGGACTGATGCTCATGCCACTTTTTATGGTGGGGGTGATGCC
TCTGGTACAATGGGTGGCGCTTGTGGGTATGGAAACTTATACAGCGAGGG
ATATGGGACAAACACAGCAGCTCTGAGCACTGCACTTTTCAACAATGGCA
TGAGCTGTGGGGCTTGTTTTGAGATCAAGTGTGTTAATGACCCAAGATGG
TGCCGTCCGGGCTCCATTTTTGTTACTGCCACAAATTTTTGCCCTCCAAA
TAATGCTCTCCCAAACAATGCCGGTGGCTGGTGCAATCCTCCCCAGCAAC
ATTTTGACCTCTCTCAGCCTGTGTTTGAACAAATTGCTCAGTACAAAGCT
GGGATAGTACCTGTGTCTTACAGAAGGGTTCCATGCAGTAGGAAGGGAGG
CATCAGATTCACGATCAACGGCCATTCTTACTTCAACTTAGTCCTAATCA
CAAACGTCGGAGGCGCTGGTGATGTGCGTGCTGTTTCAATCAAAGGGTCA
AGAACTGATTGGCAACCCATGTCAAGGAACTGGGGTCAAAACTGGCAAAG
TAACAGTTACCTCAATGGCCAAAGCCTCTCATTTAAGGTCACCACAAGTG
ATGGCCACACTGTTGTCTCTAACAATGTTGCCCCAGCTGGCTGGTCCTTT
GGCCAAACCTTCAGTGGCCTGCAAGTTCCCTGAAGTTGAAACTCAGCCTC
CAAAATCCAGCAGTTTTTTTTTTTCACATTTTCAAGTATAAAATAATGAG
TGTAATAGCGT
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