CV887231

Overview
NameCV887231
Unique NameCV887231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887231 vs. ExPASy Swiss-Prot
Match: EXPB1_ORYSJ (Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXPB1a PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.733e-14
Identity = 69/238 (28.99%), Postives = 102/238 (42.86%), Query Frame = 1
Query:   97 YGQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEG---YGTNTAALSTALFNNGMSCGACFEIKCVNDPRWC--RPGSIFVTATNFCXXXXXXXXXXGGWCNPP--QQHFDLSQPVFEQIAQ-------YKAGIVPVSYRRVPCSRKGGIRFTIN----GHSYFNLVLITNVGGAGDVRAVSI--KGSRTDWQPMSRNWGQNWQSNS--YLNGQSLSFKVTTSDGHTVVSNNVAPAGW 744
            YG  W +A AT+Y               G    +     G N+   +  +F +G  CG+CFEIKC + P  C  +P  I VT  N                + P    HFDLS   F  +A+        KAGI+   +RRV C      + T +     +  +  +L+  V G GDV  V I  KGS  +W+ +  +WG  W+ ++   L G   S +VTT  G  +++ +  P GW
Sbjct:   37 YGDKWLEAKATWYGAPKGAGPKDNGGACGYKDVDKAPFLGMNSCG-NDPIFKDGKGCGSCFEIKC-SKPEACSDKPALIHVTDMN----------------DEPIAAYHFDLSGLAFGAMAKDGKDEELRKAGIIDTQFRRVKCKYPADTKITFHIEKASNPNYLALLVKYVAGDGDVVEVEIKEKGSE-EWKALKESWGAIWRIDTPKPLKG-PFSVRVTTEGGEKIIAEDAIPDGW 254          
BLAST of CV887231 vs. ExPASy Swiss-Prot
Match: EXPB1_ARATH (Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.733e-14
Identity = 64/226 (28.32%), Postives = 98/226 (43.36%), Query Frame = 1
Query:  109 WTDAHATFYXXXXXXXXXXXXXXYGNLYS-EGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIA-------QYKAGIVPVSYRRVPCSRKG-GIRFTINGHS--YFNLVLITNVGGAGDVRAVSIK--GSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTT-SDGHTVVSNNVAPAGW 744
            W  A AT+Y              YG+L   + +     A+S  LF  G  CGAC++++C+ D   C   ++ + AT+            G        HFDLS   F  +A           G++ + YRR  C  +G  I F +N  S  Y+  +LI    G GD+ ++ I+  GS+ +W  M   WG NW           S K+TT S+  T+ + +V P+ W
Sbjct:   40 WLPATATWYGSAEGDGSSGGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRCL-DKTICSKRAVTIIATD--------QSPSGPSAKAKHTHFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSK-EWISMKHIWGANWCIVEGPLKGPFSVKLTTLSNNKTLSATDVIPSNW 255          
BLAST of CV887231 vs. ExPASy Swiss-Prot
Match: MPAL1_LOLPR (Pollen allergen Lol p 1 OS=Lolium perenne PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.500e-13
Identity = 66/239 (27.62%), Postives = 96/239 (40.17%), Query Frame = 1
Query:   97 YGQGWTDAHATFYXXXXXXXXXXXXXX--YGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQ-------YKAGIVPVSYRRVPCSRKGGIRFTINGHSYFN----LVLITNVGGAGDVRAVSIKGSRTD-WQPMSRNWGQNWQSNS--YLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFS 765
            YG  W DA +T+Y                Y N+    +   T   +T +F +G  CG+CFEIKC   P  C   ++ VT T+                     HFDLS   F  +A+         AG + + +RRV C      + T +     N     +L+  V G GDV AV IK    D W  +  +WG  W+ ++   L G   + + TT  G      +V P GW    ++S
Sbjct:   37 YGDKWLDAKSTWYGKPTGAGPKDNGGACGYKNVDKAPFNGMTGCGNTPIFKDGRGCGSCFEIKCTK-PESCSGEAVTVTITDDNEEPI------------APYHFDLSGHAFGSMAKKGEEQNVRSAGELELQFRRVKCKYPDDTKPTFHVEKASNPNYLAILVKYVDGDGDVVAVDIKEKGKDKWIELKESWGAVWRIDTPDKLTG-PFTVRYTTEGGTKSEFEDVIPEGWKADTSYS 261          
BLAST of CV887231 vs. ExPASy Swiss-Prot
Match: MPAP1_PHLPR (Pollen allergen Phl p 1 OS=Phleum pratense GN=PHLPI PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.444e-13
Identity = 63/232 (27.16%), Postives = 94/232 (40.52%), Query Frame = 1
Query:   97 YGQGWTDAHATFYXXXXXXXXXXXXXX--YGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQ-------YKAGIVPVSYRRVPCSRKGGIRFTIN----GHSYFNLVLITNVGGAGDVRAVSIKGSRTD-WQPMSRNWGQNWQSNS--YLNGQSLSFKVTTSDGHTVVSNNVAPAGW 744
            YG  W DA +T+Y                Y ++    +   T   +T +F +G  CG+CFEIKC   P  C    + V  T+                     HFDLS   F  +A+         AG + + +RRV C    G + T +     +  +  +L+  V G GDV AV IK    D W  +  +WG  W+ ++   L G   + + TT  G    + +V P GW
Sbjct:   37 YGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTK-PEACSGEPVVVHITDDNEEPI------------APYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTG-PFTVRYTTEGGTKTEAEDVIPEGW 254          
BLAST of CV887231 vs. ExPASy Swiss-Prot
Match: EXB17_ORYSJ (Expansin-B17 OS=Oryza sativa subsp. japonica GN=EXPB17 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 7.444e-13
Identity = 66/232 (28.45%), Postives = 95/232 (40.95%), Query Frame = 1
Query:  109 WTDAHATFYXXXXXXXXXXXXXXYGNLYSE-GYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKA-------GIVPVSYRRVPCSRKG-GIRFTIN-GHSYFNLVLITNV-GGAGDVRAVSIK-GSRTDWQPMSRNWGQNW-QSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFS 765
            W  A AT+Y              YG+L           ++S  LF +G  CGAC+++KC+ D   C   ++ V  T+ C          GG C   + HFDLS   F ++A   A       G + V YRR  C   G  I F +N G + F L L+     G GD+ ++ IK  +  +W  M   WG  W      L G       T S    + + +V P  W    T++
Sbjct:   48 WRPATATWYGDAEGDGSTGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCL-DHGICSRRAVTVIVTDEC---------PGGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRRTACKYGGKNIAFRVNEGSTNFWLSLLVEFEDGQGDIGSMQIKQANSVEWLDMKHVWGATWCLVRGPLVGPFSVRLTTLSAQKALTARDVIPRNWKPTATYT 269          
BLAST of CV887231 vs. ExPASy Swiss-Prot
Match: EXLB1_ARATH (Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 9.723e-13
Identity = 59/225 (26.22%), Postives = 101/225 (44.89%), Query Frame = 1
Query:  109 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKG-GIRFTINGHSY---FNLVLITNVGGAGDVRAVSI-KGSRTDWQPMSRNWGQNWQSNSYLNGQ-SLSFKVTTSDG-HTVVSNNVAPAGWSFGQTF 762
            + ++ AT+Y              YG    +      + +S  L+NNG  CGAC++++C   P  C    ++V AT+              +   P+ +  +++P  E    Y  G+V V Y+R+PC   G  + + I+  SY   +  +L+  VGG  D+ AV + +    +W+ M R +G      +   G  +L F V  S G + + S N  PA W+ G T+
Sbjct:   27 FVNSRATYYGSPDCKANPRGHCGYGEFGRDINNGEVSGVSWRLWNNGTGCGACYQVRCKIPPH-CSEEGVYVVATD------SGEGDGTDFILSPKAYGRMARPGTEN-QLYSFGVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCKEWRRMRRVFGAVHDLQNPPRGTLTLRFLVYGSAGINWIQSPNAIPADWTAGATY 243          
BLAST of CV887231 vs. ExPASy Swiss-Prot
Match: EXPB4_ARATH (Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.658e-12
Identity = 62/215 (28.84%), Postives = 93/215 (43.26%), Query Frame = 1
Query:  199 GYGTNTA---------ALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQ-------YKAGIVPVSYRRVPCSRKGG---IRFTINGHSYFNLVLITNVGGAGDVRAVSIK---GSRTDWQPM-SRNWGQNWQSNSYLNGQSLSFKVTTSDGH-TVVSNNVAPAGWSFGQTFSGL 771
            GYG+  A         A   +LFNNG  CG C+++ C+  P  C    I VT T+ C          GG C     H DLS      +A+         AG++ V+Y+R  C  +G     R     + Y+   ++    G GD+  V I+   GS    Q M S  W  N  S S L G   + ++T+ + H  +V+ NV PA W   +++  +
Sbjct:   55 GYGSAVANPPLYAMVSAGGPSLFNNGKGCGTCYQVVCIGHPA-CSGSPITVTITDEC---------PGGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFVVEYENGDGDLSNVEIQPAGGSFISMQEMRSAVWKVN--SGSALRG-PFNIRLTSGESHKVIVAYNVIPANWKPDESYRSI 256          
BLAST of CV887231 vs. ExPASy Swiss-Prot
Match: MPAH1_HOLLA (Major pollen allergen Hol l 1 OS=Holcus lanatus PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.166e-12
Identity = 64/236 (27.12%), Postives = 97/236 (41.10%), Query Frame = 1
Query:   97 YGQGWTDAHATFYXXXXXXXXXXXXXX--YGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWC--RPGSIFVTATNFCXXXXXXXXXXGGWCNPP--QQHFDLSQPVFEQIAQ-------YKAGIVPVSYRRVPCSRKGGIRFTIN----GHSYFNLVLITNVGGAGDVRAVSIKGSRTD-WQPMSRNWGQNWQSNS--YLNGQSLSFKVTTSDGHTVVSNNVAPAGW 744
            YG  W DA +T+Y                Y ++    +   T   +T +F +G  CG+CFEIKC   P  C   P ++ +T  N                  P    HFDLS   F  +A+         AG + + +RRV C    G + T +     +  +  +L+  + G GDV AV IK    D W  +  +WG  W+ ++   L G   + + TT  G    + +V P GW
Sbjct:   39 YGDEWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKDGRGCGSCFEIKCTK-PESCSGEPVTVHITDDN----------------EEPIAPYHFDLSGHAFGSMAKKGEEQKLRSAGELELKFRRVKCKYPDGTKPTFHVEKGSNPNYLALLVKYIDGDGDVVAVDIKEKGKDKWIELKESWGAVWRVDTPDKLTG-PFTVRYTTEGGTKGEAEDVIPEGW 256          
BLAST of CV887231 vs. ExPASy Swiss-Prot
Match: EXPB8_ORYSJ (Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXPB8 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.829e-12
Identity = 55/195 (28.21%), Postives = 84/195 (43.08%), Query Frame = 1
Query:  214 TAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQ-------YKAGIVPVSYRRVPCSRKG---GIRFTINGHSYFNLVLITNVGGAGDVRAVSIK-----GSRTDWQPMSRNWGQNWQ--SNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWS 747
            T+  +  L+  G  CG+C+ ++C  +P  C   +  V  T+              +    Q HFDLS   F ++A+        +AGI+ V + RVPC   G   G          +  VL+    G GDV  V +K     G R  W PM  +WG  W+  SN  L     S ++ +  G T+V+ +V P  W+
Sbjct:   85 TSCGNQPLYKGGKGCGSCYRVRCNRNPA-CSGNAQTVAITDM------------NYFPLSQYHFDLSGIAFGRLAKPGRADDLRRAGIIDVQFARVPCEFPGLKVGFHVEEGSSPVYLAVLVEYENGDGDVAQVDLKEAGAGGGR--WTPMRESWGSVWRLDSNHRLRA-PFSIRIRSDSGKTLVAPDVIPLNWT 263          
BLAST of CV887231 vs. ExPASy Swiss-Prot
Match: EXLA3_ARATH (Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.829e-12
Identity = 62/219 (28.31%), Postives = 97/219 (44.29%), Query Frame = 1
Query:  178 YGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQ---------YKAGIVPVSYRRVPCS-RKGGIRFTINGHS----YFNLVLITNVGGAGDVRAVSIKG-SRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTS---DGHTVVSNNVAPAGWSFGQTF-SGLQV 777
            YG + +  +  + AA   +++ +G  CGACF+++C N P+ C      V  T+                   Q    LS   F  +A+          K GIV V Y+RVPC+  K  +   +   S    Y  + L+   GG  +V  + I     + W  MSR+ G  W ++    G +L FK T +   DG TV S  V PA W+ G+ + +G+Q+
Sbjct:   46 YGPMATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKN-PKLCNSKGTIVMVTDL--------------NTSNQTDLVLSSRAFRAMAKPVVGVDKYLLKQGIVDVEYQRVPCNYGKRNLNVRVEEASKKPNYLAIKLLYQ-GGQTEVVGIDIAPVGSSQWSYMSRSHGAVWATDKVPTG-ALQFKFTVTGGYDGKTVWSKRVLPANWNSGRIYDAGVQI 247          
The following BLAST results are available for this feature:
BLAST of CV887231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
EXPB1_ORYSJ6.733e-1428.99Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB1_ARATH6.733e-1428.32Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 ... [more]
MPAL1_LOLPR1.500e-1327.62Pollen allergen Lol p 1 OS=Lolium perenne PE=1 SV=... [more]
MPAP1_PHLPR7.444e-1327.16Pollen allergen Phl p 1 OS=Phleum pratense GN=PHLP... [more]
EXB17_ORYSJ7.444e-1328.45Expansin-B17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXLB1_ARATH9.723e-1326.22Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 ... [more]
EXPB4_ARATH1.658e-1228.84Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 ... [more]
MPAH1_HOLLA2.166e-1227.12Major pollen allergen Hol l 1 OS=Holcus lanatus PE... [more]
EXPB8_ORYSJ2.829e-1228.21Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXLA3_ARATH2.829e-1228.31Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030A11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887231 ID=CV887231; Name=CV887231; organism=Citrus sinensis; type=EST; length=861bp
CTCTCTTACAAAAAGATACGCAAGCAAAAGGGTTTCAGGAACATGGCATT
TCTTGGGCTGCTGTTGTTGGGGATTCTTTCTTTAGTCTCATCTGTTTATG
GCCAGGGATGGACTGATGCTCATGCCACTTTTTATGGTGGGGGTGATGCC
TCTGGTACAATGGGTGGCGCTTGTGGGTATGGAAACTTATACAGCGAGGG
ATATGGGACAAACACAGCAGCTCTGAGCACTGCACTTTTCAACAATGGCA
TGAGCTGTGGGGCTTGTTTTGAGATCAAGTGTGTTAATGACCCAAGATGG
TGCCGTCCGGGCTCCATTTTTGTTACTGCCACAAATTTTTGCCCTCCAAA
TAATGCTCTCCCAAACAATGCCGGTGGCTGGTGCAATCCTCCCCAGCAAC
ATTTTGACCTCTCTCAGCCTGTGTTTGAACAAATTGCTCAGTACAAAGCT
GGGATAGTACCTGTGTCTTACAGAAGGGTTCCATGCAGTAGGAAGGGAGG
CATCAGATTCACGATCAACGGCCATTCTTACTTCAACTTAGTCCTAATCA
CAAACGTCGGAGGCGCTGGTGATGTGCGTGCTGTTTCAATCAAAGGGTCA
AGAACTGATTGGCAACCCATGTCAAGGAACTGGGGTCAAAACTGGCAAAG
TAACAGTTACCTCAATGGCCAAAGCCTCTCATTTAAGGTCACCACAAGTG
ATGGCCACACTGTTGTCTCTAACAATGTTGCCCCAGCTGGCTGGTCCTTT
GGCCAAACCTTCAGTGGCCTGCAAGTTCCCTGAAGTTGAAACTCAGCCTC
CAAAATCCAGCAGTTTTTTTTTTTCACATTTTCAAGTATAAAATAATGAG
TGTAATAGCGT
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