EY665683

Overview
NameEY665683
Unique NameEY665683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665683 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.807e-23
Identity = 58/81 (71.60%), Postives = 63/81 (77.78%), Query Frame = 1
Query:  505 SLIHAQSILAIWACQVVLMGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEGFAELKVKEIKNGRLAMFSMFGF 738
            +LIHA+S+LAI A QV+LMGAVEGYR    A G  GE  D LYPGG FDPLGLADDP+ F ELKVKEIKNGRLAM  M GF
Sbjct:    4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGF 84          
BLAST of EY665683 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.155e-19
Identity = 71/165 (43.03%), Postives = 87/165 (52.73%), Query Frame = 1
Query:  250 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPL---GEVTDPLYPGGSFDPLGLADDPEGFAELKVKEIKNGRLAMFSMFG 735
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF    QI+ +  +D+          +  A+ A QVV    +E +R  GG L    E  D  YPG  FDPL L  +       K  EIKNGRLAM  MFG
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWF----QIWDK--VDF----------NRFAVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMNGMFG 512          

HSP 2 Score: 88.1965 bits (217), Expect = 6.697e-17
Identity = 64/185 (34.59%), Postives = 90/185 (48.65%), Query Frame = 1
Query:  241 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGG---PLGEVTDPLYPGGSFDPLGLADDPEGFAELKVKEIKNGRLAMFSMFGFLRSGPLSPAREPVKEL 786
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +                    L +    + +    E +R  GG     GE+ D  YPG  FDPL L  D       +  E+KNGRLA+ ++ G L +  L+    P+  L
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGEL-DRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAG-LTAQYLATGESPLANL 343          

HSP 3 Score: 82.4185 bits (202), Expect = 3.675e-15
Identity = 60/165 (36.36%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  253 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVTDP--LYPGGSFDPLGLADDPEGFAELKVKEIKNGRLAMFSMFGF 738
            PS+L GE+ GD G+D AGL+ADP+TF + R  EV H R AML  +G + P+ L       G+ +W++A                          I   +V +  A  G + +A G + E +DP  +YPG  FDPL L  D       K  EIKNGRLA+ ++ GF
Sbjct:   12 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL-------GKGIWYEAAQN---------------------AGIGLKEVAIFTAAYGVFEVARG-VKENSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGF 140          
BLAST of EY665683 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.551e-18
Identity = 79/226 (34.96%), Postives = 107/226 (47.35%), Query Frame = 1
Query:  145 GGRISMRKTGSKSV---SSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVTDPLYPGGS-FDPLGLADDPEGFAELKVKEIKNGRLAMFSMFGF 738
            G RIS   T   S    ++ +P       + L   S +  SYL G  PGD+G+D  GLS DPE    F + + L   EVI+ R+AMLGA G + PE+L + G+   E    WF+ G  I   G  +Y  +           ++  ++ LMG  E  R                     LG   DP YPGG  F+PLG   D +   ELK+KEIKNGRLAM ++ G+
Sbjct:   24 GSRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 239          
BLAST of EY665683 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.057e-18
Identity = 71/190 (37.37%), Postives = 96/190 (50.53%), Query Frame = 1
Query:  256 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVT------------DPLYPGGSF-DPLGLADDPEGFAELKVKEIKNGRLAMFSMFGFLRSG 750
            SYL G  PGDYG+D  GLS DPE    F + R L   EVI+ R+AMLGA+G + PE L + G+   E    WF+ G  I   G  +Y  +           ++  ++ LMG  E  R       G +G+              +P YPGG F +PLG   D +   ELK+KE+KNGRLAM ++ G+   G
Sbjct:   66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQG 245          
BLAST of EY665683 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.746e-17
Identity = 68/201 (33.83%), Postives = 92/201 (45.77%), Query Frame = 1
Query:  253 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEGFAELKVKEIKNGRLAMFSMFGFL------RSGPLSPAREPVKELGPTTWADPWQKTI 825
            P YLTG  PGD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+    G+      W+ AG  + F+     ++    L H   I   W   +   G+V     ++    P GEV    YPGG F+PL  A       E K KEI NGRLAM +  GF+        GP     + +        +DPW  TI
Sbjct:   63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPAGEVG---YPGGIFNPLNFAPT----LEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHI--------SDPWHNTI 245          
BLAST of EY665683 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.492e-16
Identity = 67/195 (34.36%), Postives = 94/195 (48.21%), Query Frame = 1
Query:  253 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEGFAELKVKEIKNGRLAMFSMFGFLRSGPLSPAREPVKELGPTTWADPWQKTI 825
            P YLTG   GD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+  + G+      W+ AG  Q F+     ++    L H   I   W   +   G+V     ++    P GEV    YPGG F+PL  A   E     K KE+ NGRLAM +  GF+    ++  + P + L     +DPW  TI
Sbjct:   64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVG---YPGGIFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVT-GKGPFENL-LQHLSDPWHNTI 246          
BLAST of EY665683 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.799e-15
Identity = 75/236 (31.78%), Postives = 101/236 (42.80%), Query Frame = 1
Query:  163 RKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEGFAELKVKEIKNGRLAMFSMFGF 738
            +K+  K+V++  P + P  +          P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   GV      W  AG     +G   YLG P      +++ I   +V+++G +E  R A     +    LYPGG F DPLGLA DPE  A+L++ EIK+ RLAM +  GF
Sbjct:   44 KKSAKKTVTTDRPLWYPGAIS---------PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLT--GV-----TWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGF 256          
BLAST of EY665683 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.396e-14
Identity = 73/222 (32.88%), Postives = 91/222 (40.99%), Query Frame = 1
Query:  250 PPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEGFAELKVKEIKNGRLAMFSMF------GFLRSGPLS 759
            PP +L G   GD G+D  GL    E             AKN                                RE E+IH RWAMLG LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG FDPLGLA DPE    LK+ EIK+ RLAM +         F   GP+S
Sbjct:   65 PPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALT--GI-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVLVVGYIEFQR------NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVS 269          
BLAST of EY665683 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.063e-14
Identity = 75/232 (32.33%), Postives = 96/232 (41.38%), Query Frame = 1
Query:  175 SKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEGFAELKVKEIKNGRLAMFSMFGF 738
            +K+V S  P + P           + P YL G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   GV      W  AG     +G   YLG P      +++ I   +V+++G +E  R A     +    LYPGG F DPLGLA DP   A+L++ EIK+ RLAM    GF
Sbjct:   45 AKTVISDRPLWFP---------GAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLT--GV-----TWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGF 253          
BLAST of EY665683 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.063e-14
Identity = 65/192 (33.85%), Postives = 78/192 (40.62%), Query Frame = 1
Query:  253 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVTDPL--------YPGGS-FDPLGLA---------DDPEGFAELKVKEIKNGRLAMFSMFGF 738
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S   +   Q++LMG VE  R                P  +  +          YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F
Sbjct:   68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIF 240          
The following BLAST results are available for this feature:
BLAST of EY665683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB21_EUGGR2.807e-2371.60Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
LH18_EUGGR7.155e-1943.03Light-harvesting complex I LH38 proteins (Fragment... [more]
CB13_SOLLC3.551e-1834.96Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA6.057e-1837.37Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB24_PEA8.746e-1733.83Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH1.492e-1634.36Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB4A_ARATH4.799e-1531.78Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4C_ARATH1.396e-1432.88Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB4B_ARATH4.063e-1432.33Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4A_SOLLC4.063e-1433.85Chlorophyll a-b binding protein CP24 10A, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-092-D10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665683 ID=EY665683; Name=EY665683; organism=Citrus sinensis; type=EST; length=876bp
CTTCTCTTGCTTACCACCTTTTCTTGCTTACCAGCTTCTGCTTCTCAATT
AAATTCCTCTATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCGTCG
GCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGC
CGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCC
GTGGTACGGCCCGGACAGAGTCAAGTACTTGGGCCCACTCTCTGGCGAGC
CCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGACACT
GCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGA
AGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCC
CGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTC
AAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAA
CCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCCAGG
TGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTC
GGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGG
TTTGGCTGATGACCCGGAGGGCTTTGCTGAGCTCAAGGTTAAGGAAATCA
AGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGGTTTCTTCGTTCAGGG
CCATTGTCCCCGGCAAGGGAACCGGTTAAAGAACTTGGCCCGACCACTTG
GGCTGACCCCTGGCAAAAAACAATTGCCTTGGGCCTACCCCCACCCAATT
TTGGCCCCCGGAAAATGGAAACTTCC
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