CV887228

Overview
NameCV887228
Unique NameCV887228
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.741e-11
Identity = 34/60 (56.67%), Postives = 47/60 (78.33%), Query Frame = 1
Query:  682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSS 861
            M R K  M++IEN  + QVT++KRR+G++KKA ELSVLCD +V L++FSP  KL ++SSS
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60          
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.497e-11
Identity = 32/60 (53.33%), Postives = 48/60 (80.00%), Query Frame = 1
Query:  682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSS 861
            MGR K+ +++IEN  + QVT+ KRR+G++KKA ELSVLCD +V L++FS  G+L ++S+S
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTS 60          
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.497e-11
Identity = 32/60 (53.33%), Postives = 48/60 (80.00%), Query Frame = 1
Query:  682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSS 861
            MGR K+ +++IEN  + QVT+ KRR+G++KKA ELSVLCD +V L++FS  G+L ++S+S
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTS 60          
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.497e-11
Identity = 31/60 (51.67%), Postives = 47/60 (78.33%), Query Frame = 1
Query:  682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSS 861
            MGR K+ +++I+N  + QVT++KRR G+ KKA ELS+LCD +VGLL+FS + +L  ++SS
Sbjct:    1 MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASS 60          
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 9.792e-11
Identity = 31/61 (50.82%), Postives = 47/61 (77.05%), Query Frame = 1
Query:  682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSSR 864
            MGR K+ +++IEN    QVT++KRR GI+KKA E+ VLCD +VG+++FS +GKL+ Y + +
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPK 61          
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.792e-11
Identity = 32/60 (53.33%), Postives = 48/60 (80.00%), Query Frame = 1
Query:  682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSS 861
            MGR K+ +++IEN  + QVT+ KRR+G++KKA ELS+LCD +V L++FS  G+L ++SSS
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSS 60          
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.792e-11
Identity = 32/60 (53.33%), Postives = 48/60 (80.00%), Query Frame = 1
Query:  682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSS 861
            MGR K+ +++IEN  + QVT+ KRR+G++KKA ELS+LCD +V L++FS  G+L ++SSS
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSS 60          
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.792e-11
Identity = 31/71 (43.66%), Postives = 51/71 (71.83%), Query Frame = 1
Query:  682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFI 894
            M R K+ +++IEN    QVT+ KRR G++KKA ELSVLCD ++G+++FSP GKL + ++   +E +  +++
Sbjct:    1 MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKYM 71          
The following BLAST results are available for this feature:
BLAST of CV887228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
AGL19_ARATH5.741e-1156.67Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
MADS5_ORYSJ7.497e-1153.33MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI7.497e-1153.33MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MAD23_ORYSJ7.497e-1151.67MADS-box transcription factor 23 OS=Oryza sativa s... [more]
MADS4_ORYSJ9.792e-1150.82MADS-box transcription factor 4 OS=Oryza sativa su... [more]
MADS1_ORYSJ9.792e-1153.33MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI9.792e-1153.33MADS-box transcription factor 1 OS=Oryza sativa su... [more]
AGL12_ARATH9.792e-1143.66Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030A09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887228 ID=CV887228; Name=CV887228; organism=Citrus sinensis; type=EST; length=902bp
GTTTGTGATATGCTAGGAGCTTACAAATTCCCAAATTGCAGACAAGTTAA
AAGAAAATCCGATTACCAATATTCCAGGAGAGTCGTCATATTGCATATCA
ACTCCCTTGATCACTTCTGATACCGTCGAGGTTCATAGAAAAATAAAAAA
AGAAAATTCCTTGATCACAGACATAGTAGGAGAAGCTGAAATTAACGTAG
AACTGAAACTGCAATAGCCGCTCACAAACCCTTCCACAGATTCATTAGCA
ATCCAATGTAATCCAGAGGAGCTGGCAAATGATGATTCAAGAAAAATGCA
TGGCGGAGCTTGATTCATCGCTAGCCTTGCCTTGGCTCGGCTTCTTCTTC
TTCTTCTTATAAGGGATCCCTCTAGCCTTAGCTTGGCACTCCCTCACTTC
CCTTAAATAAACCCTTATCGCGCCACTAGCGAAAGGATTTGTCTCCGGCG
ATCCTCCATTCTCTTCATAGGCAGCTCGAAGCCGACCGATGAGAGCATCA
AGGCTGCCCCAAGCTTGCCGTAGAGGGCAAGTACAAGGAGCCGGCGGCTC
GGGCTGGCCATAAAACATGCAGCCTTGGAGATGAACCTTTGTCTTGCCAA
ATTGATCAAGATAGCGAAGAAAGTCAAGCACATGATTGCAACTGCACTGA
GACAAAGTTTTGCTTTCAACTTTTGTTAATCATGGGTCGTAGGAAGCTCC
TTATGCAGAAAATTGAGAATTATCCTGCTCTCCAAGTAACATATACGAAG
CGCAGAGATGGGATTGTTAAGAAGGCCAATGAATTATCAGTACTGTGTGA
TACTGATGTTGGCCTCCTTATGTTTTCTCCCAGTGGTAAACTGACAAAAT
ATTCTAGCAGTAGAAGGATTGAGGATATATTTCTTCGCTTTATATGTGAT
GA
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