CV887228
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.741e-11 Identity = 34/60 (56.67%), Postives = 47/60 (78.33%), Query Frame = 1 Query: 682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSS 861 M R K M++IEN + QVT++KRR+G++KKA ELSVLCD +V L++FSP KL ++SSS Sbjct: 1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 7.497e-11 Identity = 32/60 (53.33%), Postives = 48/60 (80.00%), Query Frame = 1 Query: 682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSS 861 MGR K+ +++IEN + QVT+ KRR+G++KKA ELSVLCD +V L++FS G+L ++S+S Sbjct: 1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTS 60
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 7.497e-11 Identity = 32/60 (53.33%), Postives = 48/60 (80.00%), Query Frame = 1 Query: 682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSS 861 MGR K+ +++IEN + QVT+ KRR+G++KKA ELSVLCD +V L++FS G+L ++S+S Sbjct: 1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTS 60
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 7.497e-11 Identity = 31/60 (51.67%), Postives = 47/60 (78.33%), Query Frame = 1 Query: 682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSS 861 MGR K+ +++I+N + QVT++KRR G+ KKA ELS+LCD +VGLL+FS + +L ++SS Sbjct: 1 MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASS 60
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3) HSP 1 Score: 67.781 bits (164), Expect = 9.792e-11 Identity = 31/61 (50.82%), Postives = 47/61 (77.05%), Query Frame = 1 Query: 682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSSR 864 MGR K+ +++IEN QVT++KRR GI+KKA E+ VLCD +VG+++FS +GKL+ Y + + Sbjct: 1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPK 61
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.792e-11 Identity = 32/60 (53.33%), Postives = 48/60 (80.00%), Query Frame = 1 Query: 682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSS 861 MGR K+ +++IEN + QVT+ KRR+G++KKA ELS+LCD +V L++FS G+L ++SSS Sbjct: 1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSS 60
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 9.792e-11 Identity = 32/60 (53.33%), Postives = 48/60 (80.00%), Query Frame = 1 Query: 682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSS 861 MGR K+ +++IEN + QVT+ KRR+G++KKA ELS+LCD +V L++FS G+L ++SSS Sbjct: 1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSS 60
BLAST of CV887228 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 9.792e-11 Identity = 31/71 (43.66%), Postives = 51/71 (71.83%), Query Frame = 1 Query: 682 MGRRKLLMQKIENYPALQVTYTKRRDGIVKKANELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFI 894 M R K+ +++IEN QVT+ KRR G++KKA ELSVLCD ++G+++FSP GKL + ++ +E + +++ Sbjct: 1 MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKYM 71 The following BLAST results are available for this feature:
BLAST of CV887228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 48
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Sequences
The
following sequences are available for this feature:
EST sequence >CV887228 ID=CV887228; Name=CV887228; organism=Citrus sinensis; type=EST; length=902bpback to top |