CV887215

Overview
NameCV887215
Unique NameCV887215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887215 vs. ExPASy Swiss-Prot
Match: AQP9_HUMAN (Aquaporin-9 OS=Homo sapiens GN=AQP9 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.250e-11
Identity = 54/210 (25.71%), Postives = 89/210 (42.38%), Query Frame = 1
Query:  196 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGG--------------ANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAL 783
            S  +  ++EF+ TF+ + +    V     S+ +    G+  I   F   +   +Y   G+SGGHINPAV+  + L  ++   +  FY+  Q LGA  GAA V G          GG              A   +   S  +    ++V T +L+  VF+  D++          L P+ IG  + ++  +    +G  +NPAR L   L
Sbjct:   21 SLAKETLSEFLGTFILIVLGCGCVAQAILSRGRFG--GVITINVGFSMAVAMAIYVAGGVSGGHINPAVSLAMCLFGRMKWFKLPFYVGAQFLGAFVGAATVFGIYYDGLMSFAGGKLLIVGENATAHIFATYPAPYLSLANAFADQVVATMILLIIVFAIFDSRNLGAPRG---LEPIAIGLLIIVIASSLGLNSGCAMNPARDLSPRL 225          
BLAST of CV887215 vs. ExPASy Swiss-Prot
Match: NIP51_ARATH (Probable aquaporin NIP5-1 OS=Arabidopsis thaliana GN=NIP5-1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 54/190 (28.42%), Postives = 84/190 (44.21%), Query Frame = 1
Query:  217 AEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAL 783
            AEFV TF+ ++      +   K     + +G    A   G  +  ++  T  ISG H+NP++T      R         Y+  Q   +IC +  +KG     +  + GG  + S   S G     E + TF+L++ V + ATD +       V  LA + +G  V L  L   P TG  +NP R+LG A+
Sbjct:   82 AEFVGTFILIFTATAGPIVNQKYDGAETLIGNAACA---GLAVMIIILSTGHISGAHLNPSLTIAFAALRHFPWAHVPAYIAAQVSASICASFALKGV---FHPFMSGGVTIPS--VSLGQAFALEFIITFILLFVVTAVATDTRA------VGELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAV 257          
BLAST of CV887215 vs. ExPASy Swiss-Prot
Match: NIP41_ARATH (Putative aquaporin NIP4-1 OS=Arabidopsis thaliana GN=NIP4-1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 54/196 (27.55%), Postives = 91/196 (46.43%), Query Frame = 1
Query:  214 IAEFVATFLFLY----ITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALI 786
            IAE + T+  ++    + V+ V+          T+   GI   +G ++  ++Y T  ISG H NPAVT    + R+    +   Y+  Q  G++  +  ++   K   E   G     +   S    L AEI+ +F+L++ +   ATD +       V  LA + +G  + +      PI+G  +NPARSLG AL+
Sbjct:   46 IAEMIGTYFIVFSGCGVVVVNVL-------YGGTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRRFPWHQVPLYIGAQFAGSLLASLTLRLMFKVTPEAFFG----TTPADSPARALVAEIIISFLLMFVISGVATDNRA------VGELAGIAVGMTIMVNVFVAGPISGASMNPARSLGPALV 224          
BLAST of CV887215 vs. ExPASy Swiss-Prot
Match: GLPF_STRCO (Probable glycerol uptake facilitator protein OS=Streptomyces coelicolor GN=glpF PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 66/240 (27.50%), Postives = 99/240 (41.25%), Query Frame = 1
Query:  214 IAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQY-------EMLGG----------------GANMLSKGYSKG-------DGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIY------NKDQA-WDDHWI 822
            I E + T L + +       V+   SK    G   IA+ +G  +    Y +  +SG H+NPAVT G+ + +    +    Y   Q LGA+ GA +V      Q+       E++GG                GA  +   +S G         L  EI+GTFVL+  + +      N   + + IL  L  GF V  + L+    TG  INP R LG  +++      NK  + W   WI
Sbjct:    8 IGETIGTALLILLGGGVCAAVTLKASKARNAGWLAIAFGWGFAVMTAAYISGPLSGAHLNPAVTVGIAI-KDGDWSNTPTYFAGQLLGAMIGAVLVWVAYYGQFQAHLTDREIVGGPGAQDTTAKSVEAQEKGAGPVLGVFSTGPEIRHTVQNLATEIIGTFVLLLAILT---QGLNDEGNGLGILGALITGFVVVSIGLSLGGPTGYAINPVRDLGPRIVHALLPLPNKGGSDWSYAWI 243          
BLAST of CV887215 vs. ExPASy Swiss-Prot
Match: GLPF_BACSU (Glycerol uptake facilitator protein OS=Bacillus subtilis GN=glpF PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 52/197 (26.40%), Postives = 82/197 (41.62%), Query Frame = 1
Query:  220 EFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLG-------AEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIY 789
            E + T L +        GV+  KS     G   + + +G  +    Y   GISG H+NPA+T  L             Y+  Q +GAI GA ++       ++     A  L   +S G  +        +E++GTFVLV  + +         +     L PL +GF +  + ++    TG  INPAR LG  + +
Sbjct:    7 EVIGTMLLIIFGAGVCAGVNLKKSLSFQSGWIVVVFGWGLGVAMAAYAVGGISGAHLNPALTIALAFVGDFPWKEVPVYIAAQMIGAIIGAVIIYLHYLPHWKSTDDPAAKLGV-FSTGPSIPHTFANVLSEVIGTFVLVLGILAI------GANQFTEGLNPLIVGFLIVAIGISLGGTTGYAINPARDLGPRIAH 196          
The following BLAST results are available for this feature:
BLAST of CV887215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
AQP9_HUMAN2.250e-1125.71Aquaporin-9 OS=Homo sapiens GN=AQP9 PE=1 SV=1[more]
NIP51_ARATH3.838e-1128.42Probable aquaporin NIP5-1 OS=Arabidopsis thaliana ... [more]
NIP41_ARATH3.838e-1127.55Putative aquaporin NIP4-1 OS=Arabidopsis thaliana ... [more]
GLPF_STRCO3.838e-1127.50Probable glycerol uptake facilitator protein OS=St... [more]
GLPF_BACSU3.838e-1126.40Glycerol uptake facilitator protein OS=Bacillus su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_029H10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T3_H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887215 ID=CV887215; Name=CV887215; organism=Citrus sinensis; type=EST; length=827bp
AAGAAACTTGAACCTATCTTGTCTATTAATTTTCACAAGAACATAATGGA
GGGCAAAGAAGAGGATGTAAGAGTGGGAGCAAATAGGTATCGAGAGAGTC
AACCTATTGGAACCGCGGCTCAGACTCAGGATGTGAAGGATTACACGGAG
CCACCTCCGGCGCCGCTCTTTGAGCCCGGCGAATTATCGTCGTGGTCCTT
TTACAGGGCTGGCATTGCGGAGTTTGTGGCCACGTTCTTGTTTCTTTACA
TCACTGTTCTAACAGTGATGGGCGTGTCCAAATCCAAAAGCAAATGTTCC
ACTGTGGGAATCCAGGGCATCGCTTGGGCTTTTGGCGGCATGATCTTCGC
TCTAGTCTACTGCACTGCTGGCATTTCAGGGGGTCACATTAACCCAGCGG
TGACATTCGGGCTGTTCTTGGCCCGAAAGCTGTCGCTTACCAGGGCAGTT
TTTTACATGATAATGCAGTGTTTAGGGGCCATATGCGGTGCCGCCGTTGT
AAAGGGCTTTCAGAAAAGCCAATATGAAATGCTAGGCGGCGGTGCCAACA
TGCTCAGCAAAGGCTACAGCAAGGGAGATGGCCTTGGAGCCGAGATTGTT
GGTACCTTTGTTCTTGTTTACACTGTCTTCTCGGCCACTGATGCCAAGCG
CAATGCCCGCGATTCTCATGTTCCTATATTGGCACCCCTGCCCATTGGAT
TTGCTGTGTTTTTGGTGCACTTGGCAACAATTCCTATCACAGGAACAGGC
ATTAACCCAGCTAGGAGTCTTGGCGCAGCTCTGATATACAACAAGGACCA
AGCCTGGGATGATCATTGGATTTTCTG
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