CV887215

Overview
NameCV887215
Unique NameCV887215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887215 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.738e-23
Identity = 76/216 (35.19%), Postives = 110/216 (50.93%), Query Frame = 1
Query:  205 RAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGA------EIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIF 825
            RA +AEF +TF+F++    + + + K    S  S   +  +A A    +FA V  +  +SGGH+NPAV+FG  +  ++S+ RAV+Y I Q LG+I  A V++              NM   G+    G+G       E+V TF L+YTV+ +A D KR A    V  +APL IG  V    L   P  G  +NPA + G +L+      W  HWIF
Sbjct:   21 RASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTN----------NMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGA----VSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLV---GWQWHQHWIF 219          
BLAST of CV887215 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.738e-23
Identity = 73/199 (36.68%), Postives = 109/199 (54.77%), Query Frame = 1
Query:  205 RAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK---GFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAL 783
            +A +AEF++T +F++  V + +  +K    +     G+  +A   G  +F  V   A ISGGH+NPAVTFGL L  ++++   VFY I Q LGAI GA +V+   G     + + G GA          +G+  EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V    L   P +G  +NPARS G A+
Sbjct:   20 KAYVAEFISTLVFVFAGVGSAIAYTKLTGGAPLDPAGLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQFCTGVATPTHGLSGVGA---------FEGVVMEIIVTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILVAGPFSGGSMNPARSFGPAV 205          
BLAST of CV887215 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.272e-22
Identity = 75/216 (34.72%), Postives = 109/216 (50.46%), Query Frame = 1
Query:  181 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIF 825
            EL S SF+RA  AEF AT  +++  +      S  +     + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA  YM  Q LGA+ GAAV+  +  +   + G  A N L    S G     EI  T   V  +F+  D +RN +   V     L +GF++ L HL  +  TG G+NPARS   A++      + +HW++
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGL-----GSSLRWAPGPLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQLGSV----ALAVGFSLALGHLFGMYYTGAGMNPARSFAPAILTGN---FTNHWVY 204          
BLAST of CV887215 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.272e-22
Identity = 77/216 (35.65%), Postives = 111/216 (51.39%), Query Frame = 1
Query:  181 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIF 825
            EL S SF+RA  AEF AT  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA  YM  Q LGA+ GAAV+  +  +   + G  A N L  G S       EI  T   V  +F+  D +RN R   V     L +GF++ L HL  +  TG G+NPARS   A++    + + +HW++
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVY 204          
BLAST of CV887215 vs. ExPASy Swiss-Prot
Match: AQPZ1_RHIME (Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.272e-22
Identity = 67/181 (37.02%), Postives = 97/181 (53.59%), Query Frame = 1
Query:  304 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAV--VKGFQKSQYEMLGGGANMLSK----GYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIF 825
            +G+ G+++AFG  +  + Y   GISGGH NPAV+ GL +A ++     V Y++ Q  GAI  AAV  V    K+ +++ G  AN   +    GYS    L  E+V T   +  +  +T        S VP+  AP+ IG  + L+HL +IP+T T +NPARS G AL    D A    W+F
Sbjct:   34 IGLLGVSFAFGLTVLTMAYAVGGISGGHFNPAVSVGLAVAGRMPPASLVGYILAQVTGAIAAAAVLYVIASGKADFQLGGFAANGYGEHSPGGYSLTAALVTEVVMTAFFLLIILGST-------HSRVPVGFAPIAIGLGLTLIHLVSIPVTNTSVNPARSTGQALFVG-DWAISQLWLF 206          
BLAST of CV887215 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.661e-22
Identity = 74/219 (33.79%), Postives = 115/219 (52.51%), Query Frame = 1
Query:  178 GELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNK-DQAWDDHWI 822
            G+  S +  +A ++EF+AT LF++  V + +  +K  S +     G+  +A A    +F  V   A ISGGH+NPAVT GL +   +++    FY I QCLG+I    ++      +     G    ++ G    +G+  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NPARS G A++     Q W  +W+
Sbjct:   10 GDSFSVASLKAYLSEFIATLLFVFAGVGSALAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITVITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHG----VAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIW-IYWV 219          
BLAST of CV887215 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUAB (Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.661e-22
Identity = 64/180 (35.56%), Postives = 91/180 (50.56%), Query Frame = 1
Query:  304 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGG------ANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIF 825
            +G  G+A AFG  +  + Y   GISGGH NPAV+ GL +A +L     + Y + Q LGAI  AA++      +     GG        +   GYS   GL  EI+ T   +  +  +T +   A        AP+ IGF + L+HL +IP+T T +NPARS G AL  ++  A    W+F
Sbjct:   34 IGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTSVNPARSTGVALFADR-AALSQLWLF 206          
BLAST of CV887215 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUA2 (Aquaporin Z OS=Brucella abortus (strain 2308) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.661e-22
Identity = 64/180 (35.56%), Postives = 91/180 (50.56%), Query Frame = 1
Query:  304 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGG------ANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIF 825
            +G  G+A AFG  +  + Y   GISGGH NPAV+ GL +A +L     + Y + Q LGAI  AA++      +     GG        +   GYS   GL  EI+ T   +  +  +T +   A        AP+ IGF + L+HL +IP+T T +NPARS G AL  ++  A    W+F
Sbjct:   34 IGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTSVNPARSTGVALFADR-AALSQLWLF 206          
BLAST of CV887215 vs. ExPASy Swiss-Prot
Match: AQP_DROME (Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.700e-22
Identity = 68/210 (32.38%), Postives = 108/210 (51.43%), Query Frame = 1
Query:  202 YRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG--GANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIF 825
            +R  + E V TF  +++ V    G + S S      +  IA+ FG  +  +      +SG HINPAVT G  +  ++S+ +A FY+I+QC+GAI GAAV+K    +   + GG  G +      +    +  E + TF+LV+ V + +D  R      +   APL +G A+   HL  I ++G  +NPARS G A++      W  HW++
Sbjct:   23 WRMLLGELVGTFFLIFVGV----GSTTSGS------VPQIAFTFGLTVATIAQGLGHLSGCHINPAVTLGFLIVGEISILKAAFYIIVQCVGAIAGAAVIK---VALDGVAGGDLGVSSFDPSLNCAQAVLIEALITFILVFVVKAVSDPGR----QDIKGSAPLAVGLAIAAGHLCAIKLSGASMNPARSFGPAVVQG---VWTYHWVY 212          
BLAST of CV887215 vs. ExPASy Swiss-Prot
Match: AQPZ2_RHIME (Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.700e-22
Identity = 66/180 (36.67%), Postives = 95/180 (52.78%), Query Frame = 1
Query:  304 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAV--VKGFQKSQYEMLGGGANMLSK----GYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIF 825
            +G+ G+++AFG  +  + Y   GISGGH NPAV+ GL +A ++     V Y+I Q  GAI  AAV  V    K+ +++    AN   +    GYS    L  E+V TF  +  +  +T  +  A        AP+ IG A+ L+HL +IP+T T +NPARS G AL      A    W+F
Sbjct:   34 IGLLGVSFAFGLTVLTMAYTVGGISGGHFNPAVSLGLAVAGRVPAASLVSYVIAQVAGAIIAAAVLYVIATGKADFQLGSFAANGYGEHSPGGYSLTAALVTEVVMTFFFLIIILGSTHRRVPAG------FAPIAIGLALTLIHLVSIPVTNTSVNPARSTGQALFVG-GWALSQLWLF 206          
The following BLAST results are available for this feature:
BLAST of CV887215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
TIPA_PHAVU9.738e-2335.19Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP22_ORYSJ9.738e-2336.68Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
MIP_HUMAN1.272e-2234.72Lens fiber major intrinsic protein OS=Homo sapiens... [more]
MIP_CAVPO1.272e-2235.65Lens fiber major intrinsic protein OS=Cavia porcel... [more]
AQPZ1_RHIME1.272e-2237.02Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 ... [more]
TIP22_ARATH1.661e-2233.79Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
AQPZ_BRUAB1.661e-2235.56Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1[more]
AQPZ_BRUA21.661e-2235.56Aquaporin Z OS=Brucella abortus (strain 2308) GN=a... [more]
AQP_DROME3.700e-2232.38Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 ... [more]
AQPZ2_RHIME3.700e-2236.67Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_029H10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T3_H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887215 ID=CV887215; Name=CV887215; organism=Citrus sinensis; type=EST; length=827bp
AAGAAACTTGAACCTATCTTGTCTATTAATTTTCACAAGAACATAATGGA
GGGCAAAGAAGAGGATGTAAGAGTGGGAGCAAATAGGTATCGAGAGAGTC
AACCTATTGGAACCGCGGCTCAGACTCAGGATGTGAAGGATTACACGGAG
CCACCTCCGGCGCCGCTCTTTGAGCCCGGCGAATTATCGTCGTGGTCCTT
TTACAGGGCTGGCATTGCGGAGTTTGTGGCCACGTTCTTGTTTCTTTACA
TCACTGTTCTAACAGTGATGGGCGTGTCCAAATCCAAAAGCAAATGTTCC
ACTGTGGGAATCCAGGGCATCGCTTGGGCTTTTGGCGGCATGATCTTCGC
TCTAGTCTACTGCACTGCTGGCATTTCAGGGGGTCACATTAACCCAGCGG
TGACATTCGGGCTGTTCTTGGCCCGAAAGCTGTCGCTTACCAGGGCAGTT
TTTTACATGATAATGCAGTGTTTAGGGGCCATATGCGGTGCCGCCGTTGT
AAAGGGCTTTCAGAAAAGCCAATATGAAATGCTAGGCGGCGGTGCCAACA
TGCTCAGCAAAGGCTACAGCAAGGGAGATGGCCTTGGAGCCGAGATTGTT
GGTACCTTTGTTCTTGTTTACACTGTCTTCTCGGCCACTGATGCCAAGCG
CAATGCCCGCGATTCTCATGTTCCTATATTGGCACCCCTGCCCATTGGAT
TTGCTGTGTTTTTGGTGCACTTGGCAACAATTCCTATCACAGGAACAGGC
ATTAACCCAGCTAGGAGTCTTGGCGCAGCTCTGATATACAACAAGGACCA
AGCCTGGGATGATCATTGGATTTTCTG
back to top