EY665680

Overview
NameEY665680
Unique NameEY665680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665680 vs. ExPASy Swiss-Prot
Match: EFTU_LACRJ (Elongation factor Tu OS=Lactobacillus reuteri (strain JCM 1112) GN=tuf PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.897e-21
Identity = 79/244 (32.38%), Postives = 116/244 (47.54%), Query Frame = 2
Query:   65 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTHLDWNKGPTLLDALDNIHEPEKALRQPPSVCHLRDVY 787
            + K H+NI  IGHVD GK+T T  +   L              AA+   ++  YA + D    E+ERGITI+ A  ++ET + +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV+ ++   NK D           D +  EV   L +  +  + VP V    +   EGD   E+           L+D +D+     K     P +  + DV+
Sbjct:    9 RTKPHVNIGTIGHVDHGKTTLTAAITKVL--------------AAKGLAKAEDYADI-DAAPEEKERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVQYIVVFLNKTDLVD---DDELVDLVEMEVRDLLSEYDFPGDDVPVVRGSALKALEGDPEQEKVI-------LHLMDVIDDYIPTPKRPTDKPFMMPVEDVF 220          
BLAST of EY665680 vs. ExPASy Swiss-Prot
Match: EFTU_LACRD (Elongation factor Tu OS=Lactobacillus reuteri (strain DSM 20016) GN=tuf PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.897e-21
Identity = 79/244 (32.38%), Postives = 116/244 (47.54%), Query Frame = 2
Query:   65 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTHLDWNKGPTLLDALDNIHEPEKALRQPPSVCHLRDVY 787
            + K H+NI  IGHVD GK+T T  +   L              AA+   ++  YA + D    E+ERGITI+ A  ++ET + +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV+ ++   NK D           D +  EV   L +  +  + VP V    +   EGD   E+           L+D +D+     K     P +  + DV+
Sbjct:    9 RTKPHVNIGTIGHVDHGKTTLTAAITKVL--------------AAKGLAKAEDYADI-DAAPEEKERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVQYIVVFLNKTDLVD---DDELVDLVEMEVRDLLSEYDFPGDDVPVVRGSALKALEGDPEQEKVI-------LHLMDVIDDYIPTPKRPTDKPFMMPVEDVF 220          
BLAST of EY665680 vs. ExPASy Swiss-Prot
Match: EFTU_IDILO (Elongation factor Tu OS=Idiomarina loihiensis GN=tuf1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.897e-21
Identity = 79/251 (31.47%), Postives = 120/251 (47.81%), Query Frame = 2
Query:   65 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-TRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTHLDWNKG-PTLLDALDN-IHEPEKALRQPPSVCHLRDVYKNGG 799
            + K H+N+  IGHVD GK+T T  +   L  +     + F                 +D    E+ERGITI  +  +++T TR+Y  V D PGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GV  ++   NK D       +   + +  EV   L +  +  + +P +    +   EGD         +W+K    L DALDN I EPE+ +   P +  + DV+   G
Sbjct:    8 RSKPHVNVGTIGHVDHGKTTLTAAITTVLAKVYGGAAKDFA---------------AIDNAPEEKERGITISTSHVEYDTPTRHYAHV-DCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSRQVGVPFIVVFMNKCDMVD---DEELLELVEMEVRELLSEYDFPGDDLPVIQGSALKALEGDE--------EWSKKIVELADALDNYIPEPERDI-DKPFIMPIEDVFSISG 223          
BLAST of EY665680 vs. ExPASy Swiss-Prot
Match: EFTU_DICDI (Elongation factor Tu, mitochondrial OS=Dictyostelium discoideum GN=tufm PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.897e-21
Identity = 65/190 (34.21%), Postives = 98/190 (51.58%), Query Frame = 2
Query:   65 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFV 631
            + K H+N+  IGHVD GK+T T  +                K  ++    +FK    +DK   E+ RGITI  +  ++E+   +   ID PGH+ +IKNMITG +Q D A+L++ +  G  E       QTREH +L+  +G+  ++   NKMD   P        EIV+ EV   L + G+N ++ PFV
Sbjct:   34 RTKPHVNVGTIGHVDHGKTTLTAAIT---------------KTLSDRGLANFKSYAQIDKSPEEKARGITITASHIEYESATRHYAHIDCPGHQHYIKNMITGAAQMDGAILVVSAPDGPQE-------QTREHIILSREVGIPALVVFLNKMDNADPDLV-----EIVEMEVRELLSQYGFNGDETPFV 196          
BLAST of EY665680 vs. ExPASy Swiss-Prot
Match: EFTU_CYAPA (Elongation factor Tu, cyanelle OS=Cyanophora paradoxa GN=tufA PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.897e-21
Identity = 76/234 (32.48%), Postives = 114/234 (48.72%), Query Frame = 2
Query:   71 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTHL-----DW-NKGPTLLDALDN-IHEPEKAL 748
            K H+NI  IGHVD GK+T T  +   L    K    ++++               +D    E+ RGITI+ A  ++ET + +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK D    +   A   E+V+ EV   L K  +  +++PFV  S       +  +  L      W +K   L+DA+D  I  PE+ +
Sbjct:   10 KPHVNIGTIGHVDHGKTTLTAAITTALASQGKGKARKYDE---------------IDAAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPNMVVFLNKED----QIDDADLLELVELEVRELLSKYDFPGDQIPFVSGSALLALESLSSNPKLMRGEDKWVDKILALMDAVDEYIPTPERPI 217          
BLAST of EY665680 vs. ExPASy Swiss-Prot
Match: EFTU_CLOAB (Elongation factor Tu OS=Clostridium acetobutylicum GN=tuf PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.897e-21
Identity = 66/189 (34.92%), Postives = 94/189 (49.74%), Query Frame = 2
Query:   65 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 631
            + K H+NI  IGHVD GK+T T  +   L              A E   ++F Y  + DK   E+ERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D           D +  EV   L + G+  +  P V
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITTIL--------------AKEGKAKAFNYEEI-DKAPEEKERGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVEYIVVFLNKADQVD---DPELIDLVEMEVRELLNEYGFPGDDTPIV 171          
BLAST of EY665680 vs. ExPASy Swiss-Prot
Match: EFTU_BORAP (Elongation factor Tu OS=Borrelia afzelii (strain PKo) GN=tuf PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.897e-21
Identity = 74/249 (29.72%), Postives = 124/249 (49.80%), Query Frame = 2
Query:   56 IMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTHLDWNKGPTLLDALDNIHE-PEKALRQPPSVCHLRDVYKNGG 799
            +  + K H+N+  IGHVD GK+T T  +      ++K             + ++ KY  + D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+      + +  EV   ++K G++    P +  S F   +  E        K   LL+++DN  + PE+ +   P +  + DV+   G
Sbjct:    5 VFQRTKPHMNVGTIGHVDHGKTTLTAAISIYCSKLNK-------------DAKALKYEDI-DNAPEEKARGITINARHIEYETANRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPEL----VELVEVEVLELVEKYGFS-ANTPIIKGSAFGAMSNPEDPEATKCVK--ELLESMDNYFDLPERDI-DKPFLLAVEDVFSISG 224          
BLAST of EY665680 vs. ExPASy Swiss-Prot
Match: EFTU_APPPP (Elongation factor Tu OS=Apple proliferation phytoplasma GN=tuf PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.897e-21
Identity = 76/233 (32.62%), Postives = 118/233 (50.64%), Query Frame = 2
Query:   65 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTHLDWNKGPTLLDALDN-IHEPEKALRQP 757
            ++K H+N+  IGHVD GK+T T  +   L            K  AE   +S+     +DK K E+ERGITI+     +ET + +   +D PGH D++KNMITG +Q D  +L++ +  G          QTREH LLA  +G+ ++I   NK D       +  +  +V+ EV   L +  ++ +K PFV  S  +    +E +     NK   LL+ LD  I +P + + +P
Sbjct:    8 RDKVHVNVGTIGHVDHGKTTLTAAITKILS----------TKGLAE--NKSYDQ---IDKTKEEKERGITINTTHVSYETVKRHYAHVDCPGHADYVKNMITGAAQMDAGILVVSAYHGVMP-------QTREHVLLAGQVGISKLIVFLNKCDLV----KEEEWIHLVEMEVRELLNEYKFDGDKTPFVRGSALKA---LEGTDVEGINK---LLEVLDEYIEDPIRDVEKP 208          
BLAST of EY665680 vs. ExPASy Swiss-Prot
Match: EFTU1_ORITB (Elongation factor Tu 1 OS=Orientia tsutsugamushi (strain Boryong) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.897e-21
Identity = 77/233 (33.05%), Postives = 111/233 (47.64%), Query Frame = 2
Query:   65 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTHLDWNKG-PTLLDALDN-IHEPEKALRQP 757
            ++K H NI  IGHVD GK++    +           I   E     +  +++     +D    ER RGITI  A  +F + + +  ++D PGH D+IKNMITG SQ D  +L++    G          QTREH LLA  +GV  +I C NK+D   P+      + I  EV   L K  +  + VP +  S  +  N        D  KG   L+DA+D+ I +P + L QP
Sbjct:    7 RDKPHCNIGTIGHVDHGKTSLATAI----------TIVSSELSDGAVKVKNYDE---IDSAPEERARGITIQTAHVEFISKKRHYALVDCPGHVDYIKNMITGASQTDGLILVVSGVDGVMP-------QTREHVLLAKQVGVPSIIVCINKIDQADPEL----LELIEMEVRELLTKYDFPGDTVPIIRCSALKAIN-----GDSDAKKGILELMDAIDDYIPQPTRVLDQP 210          
BLAST of EY665680 vs. ExPASy Swiss-Prot
Match: EFTU_THEAB (Elongation factor Tu OS=Thermosipho africanus (strain TCF52B) GN=tuf PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.478e-21
Identity = 74/245 (30.20%), Postives = 111/245 (45.31%), Query Frame = 2
Query:   65 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTHLDWNKGPTLLDALDNIHEPEKALRQPPSVCHLRDVYKNGG 799
            + K H+N+  IGH+D GK+T T  +   L    +     +E+               +DK   E+ERGITI+I+  ++ET   +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  MI   NK D       +   D +  EV   L K  +  + +P V  S  +     +      +     LLD +D+     +     P +  + DV+   G
Sbjct:    8 RSKPHLNVGTIGHIDHGKTTLTAAITKYLSFFGRADYTPYEQ---------------IDKAPEEKERGITINISHIEYETETRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVNVPAMIVFINKTDMVD---DEELIDLVEMEVRELLNKYEFPGDDLPVVRGSALKAVEGPDDPNDPVYAPIKELLDTMDSYFPEPQRETDKPFLMPVEDVFSITG 227          
The following BLAST results are available for this feature:
BLAST of EY665680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_LACRJ1.897e-2132.38Elongation factor Tu OS=Lactobacillus reuteri (str... [more]
EFTU_LACRD1.897e-2132.38Elongation factor Tu OS=Lactobacillus reuteri (str... [more]
EFTU_IDILO1.897e-2131.47Elongation factor Tu OS=Idiomarina loihiensis GN=t... [more]
EFTU_DICDI1.897e-2134.21Elongation factor Tu, mitochondrial OS=Dictyosteli... [more]
EFTU_CYAPA1.897e-2132.48Elongation factor Tu, cyanelle OS=Cyanophora parad... [more]
EFTU_CLOAB1.897e-2134.92Elongation factor Tu OS=Clostridium acetobutylicum... [more]
EFTU_BORAP1.897e-2129.72Elongation factor Tu OS=Borrelia afzelii (strain P... [more]
EFTU_APPPP1.897e-2132.62Elongation factor Tu OS=Apple proliferation phytop... [more]
EFTU1_ORITB1.897e-2133.05Elongation factor Tu 1 OS=Orientia tsutsugamushi (... [more]
EFTU_THEAB2.478e-2130.20Elongation factor Tu OS=Thermosipho africanus (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-092-D07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665680 ID=EY665680; Name=EY665680; organism=Citrus sinensis; type=EST; length=848bp
CGAGAGAGAACCATTTTCGCGAATATCATTTTAATAAGGTTTTTTCTAGA
TTTGCATAATGGGTAAGGAGAAGACTCACATCAACATTGTGGTCATCGGC
CATGTCGACTCTGGAAAGTCGACCACCACCGGACACTTGATCTACAAGCT
TGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGAAGGAAGCTGCTG
AGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTCGACAAGCTCAAG
GCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGTTCGA
GACCACCAGGTACTACTGCACCGTCATTGATGCTCCTGGACATCGTGACT
TTATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGTCCTT
ATCATTGACTCTACCACCGGTGGTTTTGAAGCTGGTATCTCCAAGGATGG
TCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGA
TGATTTGCTGCTGTAACAAGATGGATGCCACCACCCCCAAGTACTCAAAG
GCTAGGTACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGT
TGGATACAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGG
GTGACAACATGATTGAGAGGTCTACCCACCTTGACTGGAACAAGGGTCCA
ACCCTGCTGGATGCTCTTGACAATATCCATGAACCCGAAAAGGCCCTCAG
ACAACCCCCCTCCGTCTGCCACCTCCGGGACGTGTACAAAAATGGGGGGC
ATTTGAAACCGTCCCCAGGGGGTCCCGTTTAAAACCGGGGGGGCTCAA
back to top