CV887194

Overview
NameCV887194
Unique NameCV887194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.169e-31
Identity = 69/164 (42.07%), Postives = 106/164 (64.63%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNI 586
            MGRGKIEIKRIEN +NRQVTYSKRRNGI KKA+E++VLCDA+VS+I+F+++GK HE+ S  T+   + DQY K  G  LW   +  +     K+K+ N+ ++ ++R   GED+  L   EL  LE  + +   ++R ++  +++      +KK +++EE    +
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSS--TSLVDILDQYHKLTGRRLWDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMMLEDALDNGLTSIRNKQNDLLRMM----RKKTQSMEEEQDQL 158          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.994e-31
Identity = 84/222 (37.84%), Postives = 128/222 (57.66%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNI---LLDFETKYDDPHYGLV-------DNGDYQSAMALANGASNLYAFRMQ--QQNLHQ 724
            MGRGKIEIKRIEN +NRQVTYSKRRNGI KKA+E++VLCDA+VS+I+F+++GK HE+ S  T+   + DQY K  G  L    +  +     K+K+ N+ ++ ++R   GED+  L   EL  LE  + +   ++R ++  V++      +KK +++EE    +   L   E    + + G +       +N DYQ+ M         +AFR+Q  Q NL +
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSS--TSLVDILDQYHKLTGRRLLDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMILEDALENGLTSIRNKQNEVLRMM----RKKTQSMEEEQDQLNCQLRQLEIATMNRNMGEIGEVFQQRENHDYQNHMP--------FAFRVQPMQPNLQE 208          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.880e-30
Identity = 72/162 (44.44%), Postives = 102/162 (62.96%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYR------KLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRN 562
            MGRG++E+K+IENPTNRQVT+SKRR G+ KKA EL +LCDA++ +I+FS TGK +EY SP      +FD+Y K+      ST + +M    R      ++K+ NN+LR  +RQ MG+DL  LT +++  LEQ +  S   VR RK  ++  Q      +V N
Sbjct:    1 MGRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLKAP-----STRFEEMDVQQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIEFSLYKVRLRKQQLLDQQLLEMHSRVCN 157          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.379e-30
Identity = 63/143 (44.06%), Postives = 90/143 (62.94%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVI 523
            MGRGKIEIKRIEN  NR VT+SKRRNG+ KKA+E+TVLCDAKV+LI+F++ GK  +Y  P+     M DQYQK  G  LW   +  +     ++K+ N+ L+ ++R   GED+  L  + L  +E  +      VR+ +  ++
Sbjct:    1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKLSGKKLWDAKHENLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKNLMAVEHAIEHGLDKVRDHQMEIL 143          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.867e-29
Identity = 60/138 (43.48%), Postives = 96/138 (69.57%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRER 508
            MGRGKIEIKRIEN TNRQVT+SKRR+GI KKA+E++VLCDA+V +++FS+ GK ++Y SP T+  ++ ++YQ + G  LW   +  +     ++K+ N+ ++ ++R   GEDL+ L  +EL  +E+ + +    V ++
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQTNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGIVNVNDK 138          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 1.210e-28
Identity = 65/166 (39.16%), Postives = 106/166 (63.86%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTT-----KKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERH 577
            MGRGKIEIKRIEN TNRQVT+SKRR GI KKA+E+ VLCDA+V +++FS+ GK  +Y +P TT+      ++ ++YQ + G  LW   +  +     ++K+ N+ ++ ++R   GEDL+ L  +EL  +E+ +++  A +R++    +      +K+  + LE+ H
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKYQTNSGKILWDEKHKSLSAEIDRVKKENDNMQIELRHMKGEDLNSLQPKELIAIEEALNNGQANLRDK----MMDHWRMHKRNEKMLEDEH 162          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.598e-28
Identity = 75/189 (39.68%), Postives = 111/189 (58.73%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQK--------------SLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDP 619
            MGRG++E+KRIEN  NRQVT++KRRNG+ KKA EL+VLCDA+V+LI+FSN GK +E+ S ++  + + ++YQK              +L V+L S      Q+ Y KLKE  + L++  R  +GEDL  L+ +EL  LE+ + SS   +R  +   +  Q +  + K R L E +  + L     Y  P
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLRTL-ERYQKCNYGAPEPNVPSREALAVELSS------QQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQMP 182          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 6.005e-28
Identity = 70/166 (42.17%), Postives = 104/166 (62.65%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTK--KMFDQY---QKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERH 577
            MGRGK+++KRIEN  NRQVT+SKRRNG+ KKA E++VLCDA+V+ I+FS  GK +EY + +   K  + +++Y   +K+L +   S         YRKLK     ++K  +  MGEDL+ L  +EL+ LEQ + SS   +  RK H++       +KK R+L+E +
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSYAEKAL-ISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIISRKSHLMLESISELQKKERSLQEEN 165          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.024e-27
Identity = 75/189 (39.68%), Postives = 111/189 (58.73%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQK--------------SLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDP 619
            MGRG++E+KRIEN  NRQVT++KRRNG+ KKA EL+VLCDA+V+LI+FSN GK +E+ S ++  + + ++YQK              +L V+L S      Q+ Y KLKE  + L++  R  +GEDL  L+ +EL  LE+ + SS   +R  +   +  Q +  + K R L E +  + L     Y  P
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMIRTL-ERYQKCNYGPPEPNVPSREALAVELSS------QQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLRLRLADGYQMP 182          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.338e-27
Identity = 70/157 (44.59%), Postives = 101/157 (64.33%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKS----LGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKK 553
            MGRGKI I+RI+N T+RQVT+SKRRNGIFKKA+EL +LCDA+V L++FS+TG+ +EY S  T+ K + D+Y KS      V   ++     Q     L++  + L+++ RQ MGEDL  L  +EL+ LE  +  S  +VR +K HV+  +     +K
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSS--TSMKSVIDRYGKSKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRK 155          
The following BLAST results are available for this feature:
BLAST of CV887194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
GLOB_TOBAC1.169e-3142.07Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
FBP1_PETHY1.994e-3137.84Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
MAD31_ORYSJ2.880e-3044.44MADS-box transcription factor 31 OS=Oryza sativa s... [more]
PIST_ARATH8.379e-3044.06Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
MADS2_ORYSJ1.867e-2943.48MADS-box transcription factor 2 OS=Oryza sativa su... [more]
MADS4_ORYSJ1.210e-2839.16MADS-box transcription factor 4 OS=Oryza sativa su... [more]
SEP3_ARATH4.598e-2839.68Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
MAD15_ORYSJ6.005e-2842.17MADS-box transcription factor 15 OS=Oryza sativa s... [more]
AGL9_SINAL1.024e-2739.68Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
MAD27_ORYSJ1.338e-2744.59MADS-box transcription factor 27 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_029G08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T3_G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887194 ID=CV887194; Name=CV887194; organism=Citrus sinensis; type=EST; length=837bp
TGCAACTGAAAATCCAATTAAGCTCTTAGCTCTTATCATTTTTGTTCGGT
AATACTACTGTGAATAGCTATAGCTCGGTGAATTATTCTGAAATATGGGT
AGGGGAAAGATCGAGATCAAGAGAATTGAAAACCCTACCAACAGACAAGT
CACTTACTCTAAGCGGAGAAATGGTATTTTCAAGAAAGCACAAGAACTCA
CTGTTCTTTGTGATGCTAAGGTTTCTCTCATCATGTTCTCTAACACTGGC
AAATTTCACGAGTACATAAGCCCTACAACCACGACTAAGAAGATGTTCGA
TCAATACCAGAAGAGTTTAGGGGTTGATCTCTGGAGCACCCACTACGCGA
AAATGCAAGAGTCGTACAGGAAACTGAAGGAGATCAATAATAAGCTAAGG
AAAGACATCAGGCAGAGGATGGGAGAGGATTTGGATGATCTAACCTTTGA
AGAACTGCGTGGTCTTGAGCAAAACATGTCTTCTTCTGCGGCTACCGTTC
GTGAAAGAAAGTTTCATGTGATCAAAACGCAGACAGATACCTACAAGAAG
AAGGTAAGAAACTTGGAGGAAAGGCATGGAAACATCCTGCTGGACTTTGA
AACAAAATATGACGATCCACATTACGGATTAGTTGACAATGGAGACTATC
AATCCGCAATGGCATTAGCAAATGGAGCGTCCAACCTGTATGCATTTCGC
ATGCAACAGCAAAACCTTCACCAGGGGACTGGGGGGTATGGATCCAGTGA
TCTTACCCTTGCCTGATTGCATTTGAGAGGTTAATTACATCGACCGATCT
CTTCAGGTTTCAAAATTAATTCTAAATGTGTGCTATC
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