CV887194

Overview
NameCV887194
Unique NameCV887194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.132e-26
Identity = 64/165 (38.79%), Postives = 104/165 (63.03%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTK--KMFDQYQ--KSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERH 577
            MGRGK+++KRIEN  NRQVT+SKRR+G+ KKA E++VLCDA+V+LI+FS  GK ++Y + +   K  + +++Y   + + +   S         YRKLK     ++K  +  MGEDL+ L  +EL+ LEQ + +S   +R RK  ++    +  ++K ++L+E +
Sbjct:    1 MGRGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEEN 165          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.932e-26
Identity = 72/164 (43.90%), Postives = 103/164 (62.80%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQK-SLG-VDLWSTHYAKMQESYR---KLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEE 571
            MGRG++E+KRIEN  NRQVT++KRRNG+ KKA EL+VLCDA+V+LI+FSN GK +E+ S +   K + D+YQK S G +++ +    +++ SYR   KLK     L++  R  +GEDL  L  +EL  LE+ +  S   VR  K   +  Q    + K + L E
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKTL-DRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLE 163          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.932e-26
Identity = 76/222 (34.23%), Postives = 116/222 (52.25%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAK-MQESYR---KLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLVDNGDYQSAMALANGASNLYAFRMQQQNLHQGTGGYGSS 748
            MGRGK+E+KRIEN  NRQVT++KRRNG+ KKA EL+VLCDA+++L++FSN GK +E+ S  +   +  D+Y+K     +     AK +Q+ Y+   KLK     L+   R  +GE+L ++   EL  LE+ + +S   +R  K   +  Q    K K   L E + ++    E              D  +A+  +   S+    + Q Q   QG   Y S+
Sbjct:    1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSSPSGMARTVDKYRKHSYATMDPNQSAKDLQDKYQDYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKLE--------------DSDAALTQSFWGSSAAEQQQQHQQQQQGMSSYQSN 208          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.523e-26
Identity = 66/165 (40.00%), Postives = 97/165 (58.79%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQK------SLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEE 571
            MGRG++E+KRIEN  NRQVT++KRRNG+ KKA EL+VLCDA+V+LI+FSN GK +E+ S ++  K + ++YQK         +          Q+ Y KLK     L++  R  +GEDL  L  +EL  LE+ +  S   +R  +  ++  Q    ++K   L E
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL-ERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNE 164          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.523e-26
Identity = 69/171 (40.35%), Postives = 107/171 (62.57%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVD--LWSTHYAKMQE---SYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILL 592
            MGRG++++KRIEN  NRQVT+SKRR+G+ KKA E++VLCDA+V+L++FS+ GK  EY S  +  +K+ ++Y + L  D  L     ++ +     + KLK     L K+ R  MGEDLD L+ +EL+ LE  + ++  ++R RK   +       +KK + L++ H N LL
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEY-STDSCMEKILERYDRYLYSDKQLVGRDISQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESISALQKKDKVLQD-HNNALL 169          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.295e-26
Identity = 78/195 (40.00%), Postives = 114/195 (58.46%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQK-SLG-VDLWSTHYAKMQESYR---KLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHY---GLVDNGDYQS 655
            MGRG++E+KRIEN  NRQVT++KRRNG+ KKA EL+VLCDA+VSLI+FSN GK +E+ S T+   K  ++YQK S G +++ +    +++ SYR   KLK     L++  R  +GEDL  L  +EL  LE+ +  S   VR  K   +  Q    + K   L + +  + +  E      H+   G  + GD Q+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCS-TSNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDMIGVRHHHIGGGWEGGDQQN 194          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.295e-26
Identity = 73/180 (40.56%), Postives = 105/180 (58.33%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQY-------QKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYD 613
            MGRG++E+KRIEN  NRQVT+SKRRNG+ KKA EL+VLCDA+V+LI+FS+ GK +E+ S      K  ++Y       Q S        H +  QE  R LK     L++  R  +GEDL  L+ +EL+ LE+ +  S +  R+RK  ++  Q D  ++K R L E +  +    E + D
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS--AGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSR-LKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEAEAD 177          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.295e-26
Identity = 76/217 (35.02%), Postives = 118/217 (54.38%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAK------MQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDF-ETKYDDPHYGLV-DNGDYQSAMALANGASNLYAFRMQQQNLH 721
            +GRGKIEIKRIEN TNRQVT+ KRRNG+ KKA EL+VLCDA+V+LI+FS  G+ +EY +   + K   ++Y+K+   D  +T           Q+   KL++  + ++K+ R  MGE L  LT  +L+GLE  +    + +R +K  ++  + +  +KK  +L   +  +     E +    H  L+  + DY+ A   +    N       Q N H
Sbjct:   17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYAN--NSVKGTIERYKKAC-TDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQYLRAKIAENERAQQHMNLMPGSSDYELAPPQSFDGRNYIQLNGLQPNNH 230          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.295e-26
Identity = 66/170 (38.82%), Postives = 104/170 (61.18%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQE-----SYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNIL 589
            MGRG++++KRIEN  NRQVT+SKRR+G+ KKA E++VLCDA+V+LI+FS+ GK  EY S  +  +++ ++Y + L  D         Q       + KLK     L K+ R  MGEDLD L+ +EL+ LE  + ++  ++R RK   +       +KK + L++ + ++L
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEY-STDSCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNSLL 169          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.303e-26
Identity = 66/165 (40.00%), Postives = 97/165 (58.79%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQK------SLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEE 571
            MGRG++E+KRIE   NRQVT++KRRNG+ KKA EL+VLCDA+V+LI+FSN GK +E+ S ++  K + ++YQK         +          Q+ Y KLK     L++  R  +GEDL  L  +EL  LE+ +  S   +R  +  ++  Q   Y++K   L E
Sbjct:    1 MGRGRVELKRIEGKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL-ERYQKCNYGAPEPNISTREALEISSQQEYLKLKGRYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALNE 164          
The following BLAST results are available for this feature:
BLAST of CV887194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MAD14_ORYSI1.132e-2638.79MADS-box transcription factor 14 OS=Oryza sativa s... [more]
SEP1_ARATH1.932e-2643.90Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
AGL3_ARATH1.932e-2634.23Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
AGL9_PETHY2.523e-2640.00Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
AGL8_SINAL2.523e-2640.35Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
SEP2_ARATH3.295e-2640.00Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
MAD17_ORYSJ3.295e-2640.56MADS-box transcription factor 17 OS=Oryza sativa s... [more]
AG_PANGI3.295e-2635.02Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
AGL8_ARATH3.295e-2638.82Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AGL9_SOLLC4.303e-2640.00Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_029G08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T3_G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887194 ID=CV887194; Name=CV887194; organism=Citrus sinensis; type=EST; length=837bp
TGCAACTGAAAATCCAATTAAGCTCTTAGCTCTTATCATTTTTGTTCGGT
AATACTACTGTGAATAGCTATAGCTCGGTGAATTATTCTGAAATATGGGT
AGGGGAAAGATCGAGATCAAGAGAATTGAAAACCCTACCAACAGACAAGT
CACTTACTCTAAGCGGAGAAATGGTATTTTCAAGAAAGCACAAGAACTCA
CTGTTCTTTGTGATGCTAAGGTTTCTCTCATCATGTTCTCTAACACTGGC
AAATTTCACGAGTACATAAGCCCTACAACCACGACTAAGAAGATGTTCGA
TCAATACCAGAAGAGTTTAGGGGTTGATCTCTGGAGCACCCACTACGCGA
AAATGCAAGAGTCGTACAGGAAACTGAAGGAGATCAATAATAAGCTAAGG
AAAGACATCAGGCAGAGGATGGGAGAGGATTTGGATGATCTAACCTTTGA
AGAACTGCGTGGTCTTGAGCAAAACATGTCTTCTTCTGCGGCTACCGTTC
GTGAAAGAAAGTTTCATGTGATCAAAACGCAGACAGATACCTACAAGAAG
AAGGTAAGAAACTTGGAGGAAAGGCATGGAAACATCCTGCTGGACTTTGA
AACAAAATATGACGATCCACATTACGGATTAGTTGACAATGGAGACTATC
AATCCGCAATGGCATTAGCAAATGGAGCGTCCAACCTGTATGCATTTCGC
ATGCAACAGCAAAACCTTCACCAGGGGACTGGGGGGTATGGATCCAGTGA
TCTTACCCTTGCCTGATTGCATTTGAGAGGTTAATTACATCGACCGATCT
CTTCAGGTTTCAAAATTAATTCTAAATGTGTGCTATC
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