CV887194

Overview
NameCV887194
Unique NameCV887194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.620e-26
Identity = 61/162 (37.65%), Postives = 99/162 (61.11%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDL-WSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERH 577
            MGRGKIE+KRIEN T+RQVT+SKRR G+ KK  EL+VLCDA++ LI+FS+ GK  EY S   +  ++  +Y ++ G  L    +  ++ +   K++     L+  +++  G+DL    +EEL  LE+ +  +   +R RK  +++ Q +  KK  + LE+ +
Sbjct:    4 MGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRYLQTTGASLPVEDNRVQLYDEVAKMRRDTLNLQLSLQRYKGDDLSLAQYEELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKEN 165          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.340e-26
Identity = 90/240 (37.50%), Postives = 127/240 (52.92%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQK-SLG---VDLWSTHYAKMQES---YRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRE-RKFHVIKTQTDTYKKKV----------RNLEE---------RHGNILLDFE------TKYDDPHYGLVDNGDYQSAMALANGASNLYAFRMQQQN 715
            MGRG++E+KRIEN  NRQVT++KRRNG+ KKA EL+VLCDA+V+LI+FSN GK +E+ S  + T+ + ++YQK S G     + +     +Q S   Y KLK     L++  R  +GEDL  L  +EL  LE+ + SS   +R  R  H++   TD  +++           R LEE          HG  LL +E       +   PH G   NG + S  A A     +  F  +Q N
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGQSMTRTL-ERYQKFSYGGPDTAIQNKENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRKLEESNQLHGQVWEHGATLLGYERQSPHAVQQVPPHGG---NGFFHSLEAAAEPTLQI-GFTPEQMN 235          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.340e-26
Identity = 71/161 (44.10%), Postives = 103/161 (63.98%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRK---LKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLE 568
            MGRGKIEIKRIEN  +RQVT+SKRR+G+ KKA+EL+VLCDA+V++I+FS +GK  EY S  T  K+   +Y         S+  +K +E   +   LK+  +KL++   Q  G+ L+ LTF+EL+ LEQ +  +  TVRERK  ++  Q +  + K +  E
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSS--TGMKQTLSRYGNH-----QSSSASKAEEDCAEVDILKDQLSKLQEKHLQLQGKGLNPLTFKELQSLEQQLYHALITVRERKERLLTNQLEESRLKEQRAE 154          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.252e-25
Identity = 78/229 (34.06%), Postives = 126/229 (55.02%), Query Frame = 2
Query:   98 GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESY-----RKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLD---FETKYDDPHYGLVDNG-DYQSAMALANGASNLYAFR-------MQQQNLHQGTGG 736
            GRGKIEIKRIEN TNRQVT+ KRRNG+ KKA EL+VLCDA+V+LI+FS+ G+ +EY     + K   ++Y+K++  +  +   A++   Y      KL++    ++   RQ MGE +  ++ +ELR LE  +  S   +R +K  ++ ++ D  +K  R ++  + N +L     E + ++P   L+  G +Y+  M      S  +  R       +Q  N H  + G
Sbjct:   18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY--SNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQK--REVDLHNDNQILRAKIAENERNNPSISLMPGGSNYEQLMPPPQTQSQPFDSRNYFQVAALQPNNHHYSSAG 242          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.635e-25
Identity = 68/167 (40.72%), Postives = 101/167 (60.48%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQK--------------SLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKK 553
            MGRG++E+KR+EN  NRQVT++KRRNG+ KKA EL+VLCDA+V+LI+FSN GK +E+ S T++  K  ++YQK              +L ++L S      Q+ Y KLK     L++  R  MGEDL  L+ ++L  LE+ + SS   +R  +   +  Q    ++K
Sbjct:    1 MGRGRVELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCS-TSSMLKTLERYQKCNYGAPEGNVTSKEALVLELSS------QQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRK 160          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 1.635e-25
Identity = 61/168 (36.31%), Postives = 103/168 (61.31%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQK-------SLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERH 577
            MGRG++E+KRIEN  NRQVT+SKRR G+ KKAQE++VLCDA+VSLI+FS+ GK  EY S  +  +K+ ++Y++        +  D            Y +LK     L ++ R  +GE+L+ ++ ++L+ LEQ + ++   +R RK  ++    +  ++K + ++E +
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEY-SSESCMEKVLERYERYSYAERQLIAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEEN 167          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.136e-25
Identity = 73/197 (37.06%), Postives = 116/197 (58.88%), Query Frame = 2
Query:   98 GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESY-----RKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLD---FETKYDDPHYGLVDNG-DYQSAM 661
            GRGKIEIKRIEN TNRQVT+ KRRNG+ KKA EL+VLCDA+V+LI+FS+ G+ +EY     + K   ++Y+K++  +  +   A++   Y      KL++    ++   RQ MGE +  ++ +ELR LE  +  S   +R +K  ++  + D  +K  R ++  + N LL     E + ++P   L+  G +Y+  M
Sbjct:   18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY--SNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELLFAEIDYMQK--REVDLHNDNQLLRAKIAENERNNPSMSLMPGGSNYEQIM 210          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.789e-25
Identity = 63/158 (39.87%), Postives = 101/158 (63.92%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQY----QKSLG------VDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTD 538
            MGRGKI I+RI+N T+RQVT+SKRRNG+ KKA+EL++LCDA+V L++FS+TG+ +E+ S  T  K + D+Y    ++ LG      + +W    A +++    L+E +       +Q MGE+L  L   +L+GLE  +  S   +R RK +++K++ +
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSS--TNMKTVIDRYTNAKEELLGGNATSEIKIWQREAASLRQQLHNLQESH-------KQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKDNLLKSEIE 149          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.789e-25
Identity = 65/169 (38.46%), Postives = 104/169 (61.54%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTK--KMFDQY---QKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNI 586
            MGRG++++KRIEN  NRQVT+SKRR+G+ KKA E++VLCDA+V LI+FS  GK  EY + +   +  + +++Y   +K L V    T        +RKLK     L+++ +  +GEDL+ L+ +EL+ LE  + S+   +R RK  ++       +KK R L+E++  +
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERILERYERYSFAEKQL-VPTDHTSPVSWTLEHRKLKARLEVLQRNQKHYVGEDLESLSMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKKDRALQEQNNQL 168          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.789e-25
Identity = 67/173 (38.73%), Postives = 104/173 (60.12%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSL-------GVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILL 592
            +GRGKIEIKRIEN TNRQVT+ KRRNG+ KKA EL+VLCDA+V+L++FS  G+ +EY +   + +   ++Y+K+         V   +T Y + + S  KL+     ++   R  +GE L  L F+EL+ LE  +    + VR +K  ++  + +  +K  R +E +H N+ L
Sbjct:   16 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYAN--NSVRGTIERYKKACSDAVNPPSVTEANTQYYQQEAS--KLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQK--REMELQHNNMYL 182          
The following BLAST results are available for this feature:
BLAST of CV887194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
FBP24_PETHY5.620e-2637.65MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
MADS8_ORYSJ7.340e-2637.50MADS-box transcription factor 8 OS=Oryza sativa su... [more]
AGL15_ARATH7.340e-2644.10Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]
AG_ARATH1.252e-2534.06Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
MTF1_PEA1.635e-2540.72MADS-box transcription factor 1 OS=Pisum sativum G... [more]
CAL_ARATH1.635e-2536.31Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
AG_BRANA2.136e-2537.06Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
MAD57_ORYSJ2.789e-2539.87MADS-box transcription factor 57 OS=Oryza sativa s... [more]
AGL8_SOLLC2.789e-2538.46Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL1_ARATH2.789e-2538.73Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_029G08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T3_G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887194 ID=CV887194; Name=CV887194; organism=Citrus sinensis; type=EST; length=837bp
TGCAACTGAAAATCCAATTAAGCTCTTAGCTCTTATCATTTTTGTTCGGT
AATACTACTGTGAATAGCTATAGCTCGGTGAATTATTCTGAAATATGGGT
AGGGGAAAGATCGAGATCAAGAGAATTGAAAACCCTACCAACAGACAAGT
CACTTACTCTAAGCGGAGAAATGGTATTTTCAAGAAAGCACAAGAACTCA
CTGTTCTTTGTGATGCTAAGGTTTCTCTCATCATGTTCTCTAACACTGGC
AAATTTCACGAGTACATAAGCCCTACAACCACGACTAAGAAGATGTTCGA
TCAATACCAGAAGAGTTTAGGGGTTGATCTCTGGAGCACCCACTACGCGA
AAATGCAAGAGTCGTACAGGAAACTGAAGGAGATCAATAATAAGCTAAGG
AAAGACATCAGGCAGAGGATGGGAGAGGATTTGGATGATCTAACCTTTGA
AGAACTGCGTGGTCTTGAGCAAAACATGTCTTCTTCTGCGGCTACCGTTC
GTGAAAGAAAGTTTCATGTGATCAAAACGCAGACAGATACCTACAAGAAG
AAGGTAAGAAACTTGGAGGAAAGGCATGGAAACATCCTGCTGGACTTTGA
AACAAAATATGACGATCCACATTACGGATTAGTTGACAATGGAGACTATC
AATCCGCAATGGCATTAGCAAATGGAGCGTCCAACCTGTATGCATTTCGC
ATGCAACAGCAAAACCTTCACCAGGGGACTGGGGGGTATGGATCCAGTGA
TCTTACCCTTGCCTGATTGCATTTGAGAGGTTAATTACATCGACCGATCT
CTTCAGGTTTCAAAATTAATTCTAAATGTGTGCTATC
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