CV887194

Overview
NameCV887194
Unique NameCV887194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 5.260e-24
Identity = 65/171 (38.01%), Postives = 101/171 (59.06%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEY--ISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFE 601
            MGRGK+E+KRIEN   RQVT+SKR++G+ KKA EL+VLCDA+VSLI+FS  GK +E+  +    T ++ +      L  D         QE   KLK     L +  R  +GEDL+ ++ +EL+ LE+ +  + +  R++K  V+  Q +  ++K R L + +  + L+ E
Sbjct:    1 MGRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNVGVGRTIERYYRCKDNLLDNDTLEDTQGLRQE-VTKLKCKYESLLRTHRNLVGEDLEGMSIKELQTLERQLEGALSATRKQKTQVMMEQMEELRRKERELGDINNKLKLETE 170          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.870e-24
Identity = 64/176 (36.36%), Postives = 105/176 (59.66%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQK-----SLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETK 607
            MGRG ++++RIEN  NRQVT+SKRRNG+ KKA E++VLCDA V+LI+FS  GK +E+ S  ++ + + ++YQ+        ++  +       + Y  LK   + L+K  RQ +GE LD LT +EL+ LE  +  S   +R +K  ++       +KK ++L+ ++  +    ET+
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEF-SSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETE 175          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 6.870e-24
Identity = 64/176 (36.36%), Postives = 105/176 (59.66%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQK-----SLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETK 607
            MGRG ++++RIEN  NRQVT+SKRRNG+ KKA E++VLCDA V+LI+FS  GK +E+ S  ++ + + ++YQ+        ++  +       + Y  LK   + L+K  RQ +GE LD LT +EL+ LE  +  S   +R +K  ++       +KK ++L+ ++  +    ET+
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEF-SSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETE 175          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.870e-24
Identity = 63/166 (37.95%), Postives = 97/166 (58.43%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESY-----RKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERH 577
            +GRGKIEIKRIEN TNRQVT+ KRRNG+ KKA EL+VLCDA+V+LI+FS+ G+ +EY +   + K   ++Y+K+      +   A+    Y      KL+     L+   R  +GE L  L   +LR LEQ +    + +R +K  ++  + +  +K+  +L   +
Sbjct:   17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN--NSVKATIERYKKACSDSSNTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLHNNN 180          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.973e-24
Identity = 61/166 (36.75%), Postives = 98/166 (59.04%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLG-----VDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERH 577
            +GRGKIEIKRIEN TNRQVT+ KRRNG+ KKA EL+VLCDA+V+LI+FS+ G+ +EY +   + K   ++Y+K+         +   +    Q+   KL+     L+   R  +GE L  L+  +L+ LEQ +    + +R +K  ++  + +  +K+  +L   +
Sbjct:   17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN--NSVKATIERYKKACSDSSNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNN 180          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.973e-24
Identity = 61/169 (36.09%), Postives = 101/169 (59.76%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQK-----SLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNI 586
            MGRG++++KRIEN  NRQVT+SKRR+G+ KKA E++VLCDA+V LI+FS  GK  EY +  +  +++ ++Y++        V    T        + KLK     L+++ +  +GEDL+ L  +EL+ LE  + S+   +R RK  ++       +K+ R L+E++  +
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYAN-DSCMERLLERYERYSFAERQLVPTDHTSPGSWTLEHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKQDRALQEQNNQL 168          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.172e-23
Identity = 61/164 (37.20%), Postives = 97/164 (59.15%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMF-DQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVR-NLEERHG 580
            MGRG+ EIKRIENPT RQ T+ KRR+G+FKKA+EL VLCDA + L++FS +GK + ++SPT  + + F ++Y+ +    +W+    + +    K+  + + L K +R    +D ++ T   L  LE N+ ++   VR  K   I  +    +  +R   EER+G
Sbjct:    1 MGRGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERYEATTHTKVWADIRQERRAELEKVGSMCDLLEKQLRFMTVDDGEEYTVPSLEALEHNLEAAMRKVRSEKDRKIGGEICYLQNIIRGRQEERYG 164          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.172e-23
Identity = 59/166 (35.54%), Postives = 102/166 (61.45%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLW-----STHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERH 577
            MGRG++++KRIEN  NRQVT+SKRR G+ KKA E++VLCDA+V+L++FS+ GK  EY S  +  +K+ ++Y++    +       S         Y +LK     L ++ R  +GEDL  ++ +EL+ LEQ + ++   +R RK  ++    +  ++K + ++E++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEY-STDSCMEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMHDSINELQRKEKAIQEQN 165          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.172e-23
Identity = 60/169 (35.50%), Postives = 100/169 (59.17%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQR-----MGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNI 586
            MGRG++++KRIEN  NRQVT+SKRR+G+ KKA E++VLCDA+V LI+FS  GK  EY +  +  +++ ++Y++    +               L+    K R ++ QR     +GEDL+ L  +EL+ LE  ++S+   +R RK  ++       +K+ R L+E++  +
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEY-ATDSCMERLLERYERYSFAEKQLVPTDHTSPGSWTLENAKLKARLEVLQRNEKLYVGEDLESLNMKELQNLEHQLASALKHIRSRKNQLMHESISVLQKQDRALQEQNNQL 168          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.531e-23
Identity = 60/166 (36.14%), Postives = 102/166 (61.45%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLW-----STHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERH 577
            MGRG++++KRIEN  NRQVT+SKRR G+ KKA E++VLCDA+V+L++FS+ GK  EY S  +  +K+ ++Y++    +       S         Y +LK     L ++ R  +GEDL  ++ +EL+ LEQ + ++   +R RK  ++    +  +KK + ++E++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEY-STDSCMEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKEKAIQEQN 165          
The following BLAST results are available for this feature:
BLAST of CV887194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
AGL13_ARATH5.260e-2438.01Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]
MAD18_ORYSJ6.870e-2436.36MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI6.870e-2436.36MADS-box transcription factor 18 OS=Oryza sativa s... [more]
AG_PETHY6.870e-2437.95Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
AG_TOBAC8.973e-2436.75Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AGL8_SOLTU8.973e-2436.09Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
MAD32_ORYSJ1.172e-2337.20MADS-box transcription factor 32 OS=Oryza sativa s... [more]
AP1_SINAL1.172e-2335.54Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
AGL8_SOLCO1.172e-2335.50Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AP1_ARATH1.531e-2336.14Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_029G08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T3_G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887194 ID=CV887194; Name=CV887194; organism=Citrus sinensis; type=EST; length=837bp
TGCAACTGAAAATCCAATTAAGCTCTTAGCTCTTATCATTTTTGTTCGGT
AATACTACTGTGAATAGCTATAGCTCGGTGAATTATTCTGAAATATGGGT
AGGGGAAAGATCGAGATCAAGAGAATTGAAAACCCTACCAACAGACAAGT
CACTTACTCTAAGCGGAGAAATGGTATTTTCAAGAAAGCACAAGAACTCA
CTGTTCTTTGTGATGCTAAGGTTTCTCTCATCATGTTCTCTAACACTGGC
AAATTTCACGAGTACATAAGCCCTACAACCACGACTAAGAAGATGTTCGA
TCAATACCAGAAGAGTTTAGGGGTTGATCTCTGGAGCACCCACTACGCGA
AAATGCAAGAGTCGTACAGGAAACTGAAGGAGATCAATAATAAGCTAAGG
AAAGACATCAGGCAGAGGATGGGAGAGGATTTGGATGATCTAACCTTTGA
AGAACTGCGTGGTCTTGAGCAAAACATGTCTTCTTCTGCGGCTACCGTTC
GTGAAAGAAAGTTTCATGTGATCAAAACGCAGACAGATACCTACAAGAAG
AAGGTAAGAAACTTGGAGGAAAGGCATGGAAACATCCTGCTGGACTTTGA
AACAAAATATGACGATCCACATTACGGATTAGTTGACAATGGAGACTATC
AATCCGCAATGGCATTAGCAAATGGAGCGTCCAACCTGTATGCATTTCGC
ATGCAACAGCAAAACCTTCACCAGGGGACTGGGGGGTATGGATCCAGTGA
TCTTACCCTTGCCTGATTGCATTTGAGAGGTTAATTACATCGACCGATCT
CTTCAGGTTTCAAAATTAATTCTAAATGTGTGCTATC
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