EY665675

Overview
NameEY665675
Unique NameEY665675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665675 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.731e-21
Identity = 56/98 (57.14%), Postives = 67/98 (68.37%), Query Frame = 3
Query:  498 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGWQL*SIWVWLKTRRLLLNSRVKKSRMGRVVMFSLFGF----LRSGPGP 776
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPG     +   L         +VK+ + GR+ MFS+FGF    + +G GP
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPL-ASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 97          
BLAST of EY665675 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.319e-20
Identity = 53/90 (58.89%), Postives = 64/90 (71.11%), Query Frame = 3
Query:  519 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGWQL*SIWVWLKTRRLLLNSRVKKSRMGRVVMFSLFGF----LRSGPGP 776
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPG     + +  +        +VK+ + GR+ MFS+FGF    + +G GP
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGL-AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240          
BLAST of EY665675 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.319e-20
Identity = 53/90 (58.89%), Postives = 64/90 (71.11%), Query Frame = 3
Query:  519 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGWQL*SIWVWLKTRRLLLNSRVKKSRMGRVVMFSLFGF----LRSGPGP 776
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPG     + +  +        +VK+ + GR+ MFS+FGF    + +G GP
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGL-AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240          
BLAST of EY665675 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.319e-20
Identity = 53/90 (58.89%), Postives = 64/90 (71.11%), Query Frame = 3
Query:  519 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGWQL*SIWVWLKTRRLLLNSRVKKSRMGRVVMFSLFGF----LRSGPGP 776
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPG     + +  +        +VK+ + GR+ MFS+FGF    + +G GP
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGL-AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 89          
BLAST of EY665675 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.319e-20
Identity = 53/90 (58.89%), Postives = 64/90 (71.11%), Query Frame = 3
Query:  519 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGWQL*SIWVWLKTRRLLLNSRVKKSRMGRVVMFSLFGF----LRSGPGP 776
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPG     + +  +        +VK+ + GR+ MFS+FGF    + +G GP
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGL-AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238          
BLAST of EY665675 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.319e-20
Identity = 53/90 (58.89%), Postives = 64/90 (71.11%), Query Frame = 3
Query:  519 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGWQL*SIWVWLKTRRLLLNSRVKKSRMGRVVMFSLFGF----LRSGPGP 776
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPG     + +  +        +VK+ + GR+ MFS+FGF    + +G GP
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGL-AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238          
BLAST of EY665675 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.561e-13
Identity = 58/189 (30.69%), Postives = 91/189 (48.15%), Query Frame = 3
Query:  267 PKLLDW*VPCDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPLYPGWQL*SIWV------WLK-------TRRLLLNSRVKKSRMGRVVMFSLFG----FLRSGPGP 776
            P  LD  +P D+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q       +Y  + +         ++  ++VL+G  EG R A    P    TDP++P  +L    V      W         +   +   R K+ + GR+ M ++ G     + +G GP
Sbjct:   75 PPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ-------EYFTDTT--------TLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 247          
BLAST of EY665675 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.023e-12
Identity = 57/189 (30.16%), Postives = 88/189 (46.56%), Query Frame = 3
Query:  267 PKLLDW*VPCDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPLYPGWQL*SIWV------WLK-------TRRLLLNSRVKKSRMGRVVMFSLFG----FLRSGPGP 776
            P+ LD  +P D+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q       +Y  + +         ++  ++VL+G  EG R A    P    TDP++P  +L    V      W         +   +   R K+ + GR+ M ++ G     + +G GP
Sbjct:   75 PEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ-------EYFTDTT--------TLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 247          
The following BLAST results are available for this feature:
BLAST of EY665675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB21_RAPSA7.731e-2157.14Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB2F_SOLLC1.319e-2058.89Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.319e-2058.89Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC1.319e-2058.89Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.319e-2058.89Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC1.319e-2058.89Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB12_SOLLC1.561e-1330.69Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY5.023e-1230.16Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-092-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665675 ID=EY665675; Name=EY665675; organism=Citrus sinensis; type=EST; length=885bp
GGAGCGCAGTACGGTCCGGATTCCGGGTCGACCCCGCGTCCGCTAGAGCT
CACCAACAACTCCGATCATTGTAAAATGGCAACCTCGACCATGGCTCTCT
CCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAG
CTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGT
TTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTC
CATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGTGACT
ACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAG
AACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCT
TGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTG
AGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTT
GACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCAT
CTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTG
CTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGGTGGCAG
CTTTGATCCATTTGGGTTTGGCTGAAGACCCGGAGGCTTTTGCTGAACTC
AAGGGTTAAGAAATCAAGAATGGGAAGGGTGGTTATGTTCTCCTTGTTTG
GTTTCCTCCGTTCAGGCCCTGGGCCCCCGGCAAGGGACCCGTTAAAAAAC
TTGGGCCGACCCCTTGGGTTGACCCCTGTAAAAAAACAATGGCCTGGGCC
TACCCCCCCAATTTTTTCCCCCCGAAAAGGGAACT
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