CV887153

Overview
NameCV887153
Unique NameCV887153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887153 vs. ExPASy Swiss-Prot
Match: COPA1_ORYSJ (Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica GN=Os03g0711400 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.867e-23
Identity = 49/119 (41.18%), Postives = 71/119 (59.66%), Query Frame = 3
Query:  153 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 509
            K   +S RVK +  HP  PWILASL+SG + +W+Y+  T+   F+  + PVR   F A +   V+G DD  I+V+NY T   +     H DYIR V  H   P+++S+SDD  I++W+W
Sbjct:    4 KFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNW 122          
BLAST of CV887153 vs. ExPASy Swiss-Prot
Match: COPA2_ARATH (Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.423e-22
Identity = 49/119 (41.18%), Postives = 70/119 (58.82%), Query Frame = 3
Query:  153 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 509
            K   +S RVK +  HP  PWILASL+SG + +W+Y+  T+   F+  E PVR   F   +   V+G DD  I+V+NY T   +     H DYIR V  H   P+++S+SDD  I++W+W
Sbjct:    4 KFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNW 122          
BLAST of CV887153 vs. ExPASy Swiss-Prot
Match: COPA1_ARATH (Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.170e-22
Identity = 48/119 (40.34%), Postives = 69/119 (57.98%), Query Frame = 3
Query:  153 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 509
            K   +S RVK +  HP  PWILASL+SG + +W+Y+  T+   F+  E PVR   F   +   V+G DD  I+V+NY     +     H DYIR V  H   P+++S+SDD  I++W+W
Sbjct:    4 KFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNW 122          
BLAST of CV887153 vs. ExPASy Swiss-Prot
Match: COPA_SCHPO (Putative coatomer subunit alpha OS=Schizosaccharomyces pombe GN=SPBPJ4664.04 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.505e-21
Identity = 45/124 (36.29%), Postives = 70/124 (56.45%), Query Frame = 3
Query:  138 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 509
            +E+  K   RS R K V  HP++PWIL SL++G + +W+Y+  T+   F+  + PVR   F   +   V+G DD  + V+NY +   +     H DY+R    H   P++LS SDD  I++W+W
Sbjct:    1 MEMLTKFESRSSRAKGVAFHPTQPWILTSLHNGRIQLWDYRMGTLLDRFDGHDGPVRGIAFHPTQPLFVSGGDDYKVNVWNYKSRKLLFSLCGHMDYVRVCTFHHEYPWILSCSDDQTIRIWNW 124          
BLAST of CV887153 vs. ExPASy Swiss-Prot
Match: COPA_YEAST (Coatomer subunit alpha OS=Saccharomyces cerevisiae GN=RET1 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 4.577e-21
Identity = 44/124 (35.48%), Postives = 72/124 (58.06%), Query Frame = 3
Query:  138 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 509
            +++  K   +S R K +  HPS PW+L +L+S T+ +W+Y+  T+   FE  E PVR   F   +   V+  DD  I+V++ +T   +     H DY+R V  H  LP+++S+SDD  I++W+W
Sbjct:    1 MKMLTKFESKSTRAKGIAFHPSRPWVLVALFSSTIQLWDYRMGTLLHRFEDHEGPVRGLDFHPTQPIFVSAGDDYTIKVWSLDTNKCLYTLTGHLDYVRTVFFHRELPWIISASDDQTIRIWNW 124          
BLAST of CV887153 vs. ExPASy Swiss-Prot
Match: COPA_MOUSE (Coatomer subunit alpha OS=Mus musculus GN=Copa PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.807e-21
Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  153 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 509
            K   +S RVK +  HP  PWIL SL++G + +W+Y+  T+   F+  + PVR   F  ++   V+G DD  I+V+NY     +     H DYIR    H   P++LS+SDD  I++W+W
Sbjct:    4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNW 122          
BLAST of CV887153 vs. ExPASy Swiss-Prot
Match: COPA_HUMAN (Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 7.807e-21
Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  153 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 509
            K   +S RVK +  HP  PWIL SL++G + +W+Y+  T+   F+  + PVR   F  ++   V+G DD  I+V+NY     +     H DYIR    H   P++LS+SDD  I++W+W
Sbjct:    4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNW 122          
BLAST of CV887153 vs. ExPASy Swiss-Prot
Match: COPA_BOVIN (Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.807e-21
Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  153 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 509
            K   +S RVK +  HP  PWIL SL++G + +W+Y+  T+   F+  + PVR   F  ++   V+G DD  I+V+NY     +     H DYIR    H   P++LS+SDD  I++W+W
Sbjct:    4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNW 122          
The following BLAST results are available for this feature:
BLAST of CV887153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
COPA1_ORYSJ2.867e-2341.18Coatomer subunit alpha-1 OS=Oryza sativa subsp. ja... [more]
COPA2_ARATH1.423e-2241.18Coatomer subunit alpha-2 OS=Arabidopsis thaliana G... [more]
COPA1_ARATH3.170e-2240.34Coatomer subunit alpha-1 OS=Arabidopsis thaliana G... [more]
COPA_SCHPO3.505e-2136.29Putative coatomer subunit alpha OS=Schizosaccharom... [more]
COPA_YEAST4.577e-2135.48Coatomer subunit alpha OS=Saccharomyces cerevisiae... [more]
COPA_MOUSE7.807e-2137.82Coatomer subunit alpha OS=Mus musculus GN=Copa PE=... [more]
COPA_HUMAN7.807e-2137.82Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=... [more]
COPA_BOVIN7.807e-2137.82Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_029E02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T3_E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887153 ID=CV887153; Name=CV887153; organism=Citrus sinensis; type=EST; length=510bp
CCCCGGGCTGCAGGCGAATCCCTCCCCTCCCTCTCTTTATTACACCAAAT
TCTCTCTCTGGATCTATAATTTACAACTTCGCTGCAAAAACTTTGATCTC
GATTTCGCAAATCAGAAAATCGAAAATGCCTCTCAGACTCGAAATCAAGA
GAAAACTTGCTCAAAGATCAGAGAGAGTAAAGTCTGTGGATTTGCATCCA
TCTGAACCATGGATTCTAGCGAGTTTGTATTCAGGAACTGTGTGTATCTG
GAACTACCAGTCACAGACTATGGCTAAGTCTTTTGAGGTCACTGAGTTAC
CAGTTAGATCAGCTAAATTTGTGGCCCGCAAGCAATGGGTAGTTGCAGGA
GCTGATGACATGTTTATTCGTGTATACAATTACAATACTATGGACAAAGT
TAAAGTATTTGAGGCTCATACGGATTACATTAGATGTGTGGCTGTTCATC
CTACCCTTCCGTATGTGCTGTCATCATCTGATGATATGCTCATAAAGCTT
TGGGATTGGG
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