CV887139

Overview
NameCV887139
Unique NameCV887139
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887139 vs. ExPASy Swiss-Prot
Match: NAC4_ARATH (NAC domain-containing protein 4 OS=Arabidopsis thaliana GN=NAC004 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.696e-14
Identity = 58/175 (33.14%), Postives = 86/175 (49.14%), Query Frame = 1
Query:    1 LTPKVFDGCFSA--RAIGEVDLNKCEPWDLPRRAKMGEKE--WYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKA---LVGMKKTLVFYRGRAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGSFGNGIGS-SALPPLMDSS 501
            L PK  D   S     I  VD+   EPWDLP ++ +  ++  WYFF V++ KY  G +  R T +G+WK TGK   + + +     +G K+ LVF   +   G KT+WVMHEY     +            + +C+V  K   G++T I       S G+ I    +L PL++SS
Sbjct:   21 LRPKNLDSDTSHVDEVISTVDICSFEPWDLPSKSMIKSRDGVWYFFSVKEMKYNRGDQQRRRTNSGFWKKTGKTMTVMRKRGNREKIGEKRVLVF---KNRDGSKTDWVMHEYHATSLF------PNQMMTYTVCKVEFK---GEETEISS----SSTGSEIEQIHSLIPLVNSS 179          
BLAST of CV887139 vs. ExPASy Swiss-Prot
Match: NAC3_ARATH (NAC domain-containing protein 3 OS=Arabidopsis thaliana GN=NAC003 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.935e-14
Identity = 58/195 (29.74%), Postives = 93/195 (47.69%), Query Frame = 1
Query:   37 RAIGEVDLNKCEPWDLP--RRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYRGRAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGSFGNGIGSSALPPLMDSSPYNSETRTTINETSHVTCFSDAL-----EDQKAQEDMI 600
            R I  V + + +PW+LP   R K+ +  W FF  ++ KY  G +  R T++G+WK+TG+ K I + +  +G KK L+FY     K  K++WV+HEY        + H +     + +C+V    G  +K+         S  +GI  S    L+     NSE  +   E    + F D L     ED K  E+++
Sbjct:   35 RFINTVPVCRLDPWELPCQSRIKLKDVAWCFFRPKENKYGRGDQQMRKTKSGFWKSTGRPKPIMRNRQQIGEKKILMFY---TSKESKSDWVIHEYH------GFSHNQMMMT-YTLCKVMFNGGMREKS---SSSPSSSGVSGIEQSRRDSLIPQLVNNSEGSSLHREDP--SQFGDVLQEAPIEDAKLTEELV 214          
BLAST of CV887139 vs. ExPASy Swiss-Prot
Match: NAC5_ARATH (NAC domain-containing protein 5 OS=Arabidopsis thaliana GN=NAC005 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.216e-12
Identity = 57/192 (29.69%), Postives = 94/192 (48.96%), Query Frame = 1
Query:   43 IGEVDLNKCEPWDLPRRAKMGEKE--WYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKA---KALVGMKKTLVFYRGRAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGSFGNGIGSSALPPLMDSSPYNSETRTTI---NETSHVTCFSDALEDQKAQED 594
            I  VD+   +PWDLP  ++M  ++  WYFF  ++ KY  G R  R T++G+WK TG   +I +    +  +G K+ LVF   +   G K++W MHEY     ++ +  P      + +C+V  K  G ++   +  V  GS G     S +PP  +S   + ET  ++    E+ + + FS  L+      D
Sbjct:   37 ISTVDICSFDPWDLPSHSRMKTRDQVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTGDREKIGEKRVLVF---KNHGGSKSDWAMHEY-----HATFSSPNQIMT-YTLCKV--KFKGERR---EFSVATGS-GIKHTHSLIPPTNNSGVLSVETEGSLFHSQESQNPSQFSGFLDVDALDRD 213          
BLAST of CV887139 vs. ExPASy Swiss-Prot
Match: NAC1_ARATH (NAC domain-containing protein 1 OS=Arabidopsis thaliana GN=NAC001 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.879e-12
Identity = 52/176 (29.55%), Postives = 81/176 (46.02%), Query Frame = 1
Query:   40 AIGEVDLNKCEPWDLPRRAKMGEKE--WYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKA--------KALVGMKKTLVFYRGRAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKTHIQGMVKLGSFGNGIGSSALPPLMDSSPYNSETRTTINE 537
            AI EV++   +PW+L  ++K   ++  WYFF  R+     G R +R T +G WK TG+  E+           +  +G K+ LVF  GR P   K++WV+HE+        YD     +  +VICR+  K           +    +F   + SSA   +  S   NS +  T +E
Sbjct:   36 AISEVNICSYDPWNLRFQSKYKSRDAMWYFFSRRENN--KGNRQSRTTVSGKWKLTGESVEVKDQWGFCSEGFRGKIGHKRVLVFLDGRYPDKTKSDWVIHEFH-------YDLLPEHQRTYVICRLEYKGDDADILSAYAIDPTPAFVPNMTSSAGSVVNQSRQRNSGSYNTYSE 202          
The following BLAST results are available for this feature:
BLAST of CV887139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
NAC4_ARATH1.696e-1433.14NAC domain-containing protein 4 OS=Arabidopsis tha... [more]
NAC3_ARATH4.935e-1429.74NAC domain-containing protein 3 OS=Arabidopsis tha... [more]
NAC5_ARATH1.216e-1229.69NAC domain-containing protein 5 OS=Arabidopsis tha... [more]
NAC1_ARATH7.879e-1229.55NAC domain-containing protein 1 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_029D05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T3_D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887139 ID=CV887139; Name=CV887139; organism=Citrus sinensis; type=EST; length=836bp
CTTACACCAAAGGTTTTTGATGGTTGTTTTTCAGCTAGAGCTATCGGTGA
AGTTGATTTGAACAAGTGTGAGCCCTGGGATTTGCCTCGGAGAGCTAAAA
TGGGTGAAAAGGAATGGTATTTTTTTTGTGTTAGGGACAGAAAGTACCCA
ACTGGATTGAGAACAAATAGAGCTACTGAAGCAGGTTACTGGAAAGCCAC
AGGCAAAGATAAGGAGATTTACAAAGCAAAAGCACTTGTGGGGATGAAGA
AAACTTTGGTTTTTTACAGAGGAAGAGCCCCGAAAGGTCAAAAAACCAAC
TGGGTCATGCATGAATATCGTTTAGAAGGCAAATATTCTGCCTACGACCA
CCCCAAAACAGCCAAAAATGAGTGGGTGATTTGTAGGGTGTTTCAAAAGA
GTGGTGGAGGAAAGAAAACACATATTCAAGGGATGGTGAAATTAGGCTCA
TTCGGGAACGGCATCGGCTCTTCTGCGTTGCCTCCATTGATGGATTCATC
TCCTTACAATAGTGAAACGAGAACCACCATTAATGAAACCTCTCACGTGA
CCTGCTTCTCCGATGCCCTGGAGGACCAGAAAGCTCAGGAAGACATGATC
GATAGCTTTAACAACTCTCTTTTAGCTTCTTCATCTTCCTCAAACCCTCA
CTCCGAAATCTCCCCTGCCTCAATTTTCTTTTCCAAATCCTCTTTTTCAA
ACTCACTCTACGCCGATCAAATCCTCCCACGTATTGCAAATATGCAATAC
CCAGATTCTTTTTTGATGCAAGACCAATCCATTTTGAAGATGTTGCTGGA
GAATCATGGACCCAGCACGAAGAAAAATTCAAAAGC
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