CV887134

Overview
NameCV887134
Unique NameCV887134
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887134 vs. ExPASy Swiss-Prot
Match: STX7_PONAB (Syntaxin-7 OS=Pongo abelii GN=STX7 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.395e-11
Identity = 33/90 (36.67%), Postives = 53/90 (58.89%), Query Frame = -2
Query:  337 QKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 606
            Q  +Q Q      D L  I ER  ++R LE  ++++ +IF D+ +++  QGD++D+IE+ V +A  HVQ  N  L +A   Q+ SRK +C
Sbjct:  150 QPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSRAADYQRKSRKTLC 239          
BLAST of CV887134 vs. ExPASy Swiss-Prot
Match: STX7_HUMAN (Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 2.395e-11
Identity = 33/90 (36.67%), Postives = 53/90 (58.89%), Query Frame = -2
Query:  337 QKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 606
            Q  +Q Q      D L  I ER  ++R LE  ++++ +IF D+ +++  QGD++D+IE+ V +A  HVQ  N  L +A   Q+ SRK +C
Sbjct:  150 QPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSRAADYQRKSRKTLC 239          
BLAST of CV887134 vs. ExPASy Swiss-Prot
Match: STX7_BOVIN (Syntaxin-7 OS=Bos taurus GN=STX7 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.395e-11
Identity = 31/77 (40.26%), Postives = 50/77 (64.94%), Query Frame = -2
Query:  337 DTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 567
            D L  IQER  ++R LE  ++++ +IF D+ +++  QGD++D+IE+ V +A  HVQ  N  L +A   Q+ SRK +C
Sbjct:  163 DDLRLIQERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSRAADYQRKSRKTLC 239          
BLAST of CV887134 vs. ExPASy Swiss-Prot
Match: STX1B_SHEEP (Syntaxin-1B OS=Ovis aries GN=STX1B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.395e-11
Identity = 47/165 (28.48%), Postives = 82/165 (49.70%), Query Frame = -2
Query:  346 QKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQXXXXXXXXXXXXXTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK 840
            Q+ G  + +   R R      L +KF + M E+   +   ++             TG+    E ++ ++E+G    IF   I+   +      L EI+ RH+ +  LE  + EL  +F+DMA+LV++QG+M+D IE  V  +VD+V+   +  +KA K Q  +R+
Sbjct:  101 QEEGLNRSSADLRIRKTQHSTLSRKFVEVMTEYNATQSK-YRDRCKDRIQRQLEITGRTTTNEELEDMLESGKLA-IFTDDIKMDSQ-MTKQALNEIETRHNEIIKLETSIRELHDMFVDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQSKARR 262          
BLAST of CV887134 vs. ExPASy Swiss-Prot
Match: STX1B_RAT (Syntaxin-1B OS=Rattus norvegicus GN=Stx1b PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.395e-11
Identity = 47/165 (28.48%), Postives = 82/165 (49.70%), Query Frame = -2
Query:  346 QKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQXXXXXXXXXXXXXTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK 840
            Q+ G  + +   R R      L +KF + M E+   +   ++             TG+    E ++ ++E+G    IF   I+   +      L EI+ RH+ +  LE  + EL  +F+DMA+LV++QG+M+D IE  V  +VD+V+   +  +KA K Q  +R+
Sbjct:  101 QEEGLNRSSADLRIRKTQHSTLSRKFVEVMTEYNATQSK-YRDRCKDRIQRQLEITGRTTTNEELEDMLESGKLA-IFTDDIKMDSQ-MTKQALNEIETRHNEIIKLETSIRELHDMFVDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQSKARR 262          
BLAST of CV887134 vs. ExPASy Swiss-Prot
Match: STX1B_MOUSE (Syntaxin-1B OS=Mus musculus GN=Stx1b PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.395e-11
Identity = 47/165 (28.48%), Postives = 82/165 (49.70%), Query Frame = -2
Query:  346 QKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQXXXXXXXXXXXXXTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK 840
            Q+ G  + +   R R      L +KF + M E+   +   ++             TG+    E ++ ++E+G    IF   I+   +      L EI+ RH+ +  LE  + EL  +F+DMA+LV++QG+M+D IE  V  +VD+V+   +  +KA K Q  +R+
Sbjct:  101 QEEGLNRSSADLRIRKTQHSTLSRKFVEVMTEYNATQSK-YRDRCKDRIQRQLEITGRTTTNEELEDMLESGKLA-IFTDDIKMDSQ-MTKQALNEIETRHNEIIKLETSIRELHDMFVDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQSKARR 262          
BLAST of CV887134 vs. ExPASy Swiss-Prot
Match: STX1B_HUMAN (Syntaxin-1B OS=Homo sapiens GN=STX1B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.395e-11
Identity = 47/165 (28.48%), Postives = 82/165 (49.70%), Query Frame = -2
Query:  346 QKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQXXXXXXXXXXXXXTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK 840
            Q+ G  + +   R R      L +KF + M E+   +   ++             TG+    E ++ ++E+G    IF   I+   +      L EI+ RH+ +  LE  + EL  +F+DMA+LV++QG+M+D IE  V  +VD+V+   +  +KA K Q  +R+
Sbjct:  101 QEEGLNRSSADLRIRKTQHSTLSRKFVEVMTEYNATQSK-YRDRCKDRIQRQLEITGRTTTNEELEDMLESGKLA-IFTDDIKMDSQ-MTKQALNEIETRHNEIIKLETSIRELHDMFVDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQSKARR 262          
BLAST of CV887134 vs. ExPASy Swiss-Prot
Match: STX1B_BOVIN (Syntaxin-1B OS=Bos taurus GN=STX1B PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.395e-11
Identity = 47/165 (28.48%), Postives = 82/165 (49.70%), Query Frame = -2
Query:  346 QKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQXXXXXXXXXXXXXTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK 840
            Q+ G  + +   R R      L +KF + M E+   +   ++             TG+    E ++ ++E+G    IF   I+   +      L EI+ RH+ +  LE  + EL  +F+DMA+LV++QG+M+D IE  V  +VD+V+   +  +KA K Q  +R+
Sbjct:  101 QEEGLNRSSADLRIRKTQHSTLSRKFVEVMTEYNATQSK-YRDRCKDRIQRQLEITGRTTTNEELEDMLESGKLA-IFTDDIKMDSQ-MTKQALNEIETRHNEIIKLETSIRELHDMFVDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQSKARR 262          
The following BLAST results are available for this feature:
BLAST of CV887134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
STX7_PONAB2.395e-1136.67Syntaxin-7 OS=Pongo abelii GN=STX7 PE=2 SV=3[more]
STX7_HUMAN2.395e-1136.67Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4[more]
STX7_BOVIN2.395e-1140.26Syntaxin-7 OS=Bos taurus GN=STX7 PE=2 SV=1[more]
STX1B_SHEEP2.395e-1128.48Syntaxin-1B OS=Ovis aries GN=STX1B PE=2 SV=1[more]
STX1B_RAT2.395e-1128.48Syntaxin-1B OS=Rattus norvegicus GN=Stx1b PE=1 SV=... [more]
STX1B_MOUSE2.395e-1128.48Syntaxin-1B OS=Mus musculus GN=Stx1b PE=1 SV=1[more]
STX1B_HUMAN2.395e-1128.48Syntaxin-1B OS=Homo sapiens GN=STX1B PE=2 SV=1[more]
STX1B_BOVIN2.395e-1128.48Syntaxin-1B OS=Bos taurus GN=STX1B PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_029D02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T7_D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887134 ID=CV887134; Name=CV887134; organism=Citrus sinensis; type=EST; length=862bp
TTTTTTTTTTAAAGCCAACAAATTCAAATGTTACATAAAGTATGTCAAAG
AATATAGAAATATATACTTCAGTTAAAATCGCATGACACAGAGTTGACTT
GATCAGAAAAGGGTGAGGGAGGGAAGGAAAGAGCTACAGGATTGGAATAT
GGAACTCAAATGACAGAAATTGGCGGGAAGGGTTAAAAAAAAGGAAAATG
ACCATTGACGGATTGACCAAAACACATATCTATACAAACAAATGTCGAGC
AGCTAAGCACCTTTGTTGCTACTCCATGGCTTGATTACCGCAACAACTAT
GATTGCAACAATGATGAGAAGGATGATGATGGCAATGCACATCCATTTCC
TGGAGTTCTTCTGTAGCTTTTTCGCCTTTTGGAGGGCAGTATTGCCTGAC
TGCACGTGATCTACAGCACTTGACACCTGAGATTCTATATTGTCCAGCAT
GTCTCCCTGTGCATCTACCAACACCGCCATATCCAGAAAGATCTGTTGTA
ACTCAAGAAGCTTCCTTTCCAAATCTCTAACGGCATCATGGCGTTCTTGA
ATTTCAGCCAGAGTGTCCATTATCTGGCCTCGACCTTGTTCTTGGATTGC
TTTCTGGAATATCTGTTCACTGTCCCCGGTCTCAATCAATTGGTCAATTG
TCTCTTCATCAGCCCTTTTGCCGGTTACTGTATAAACTCGCCTCTCCACC
ACCTCTCGATACTCTTGATGGATGTTTTCCCTTAGAACCTGAAATTCACC
CATTTTGTCTTTGAACTTCTTTTTCAAGCCAAGAGTTGTTGCTGTTCTTG
ATCGATCTACTCCTGTTCCTTTTCCACAGCCAGGCTTCTGCCTACTTGTT
AAATTCTCTCTA
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