CV887120

Overview
NameCV887120
Unique NameCV887120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_ANASP (50S ribosomal protein L15 OS=Anabaena sp. (strain PCC 7120) GN=rplO PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.086e-27
Identity = 73/153 (47.71%), Postives = 93/153 (60.78%), Query Frame = -3
Query:  345 NNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 803
            N++ PQ GS         GI+AGQG S G GMRGQKSRSG G R GFEGGQ PLYRRIPKL+G           Y  +N++ +  A      EV+LE+L+  G++  +    K PLKILG+G+L   LN KA AF+  A+ K+EAAG +  VL
Sbjct:    4 NDVKPQKGSKKRRRRVGRGISAGQGASAGLGMRGQKSRSGSGTRPGFEGGQQPLYRRIPKLKGFP---VVNRKIYTTINVEKL--ADLPANTEVTLESLRAAGILTAA----KGPLKILGNGDLGVALNVKAAAFTGQARSKIEAAGGSCEVL 147          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_SYNJA (50S ribosomal protein L15 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplO PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.056e-26
Identity = 71/146 (48.63%), Postives = 90/146 (61.64%), Query Frame = -3
Query:  363 NLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 800
            ++ PQPGS         GIAAGQG SCG GMRGQK+R G G R GFEGGQ PLYRR+PKL+      +   P+Y  +NL+ +  A    G EVSLE+L   G++  +      PLKILGDGE+   L  +A A + SA+ K+EAAG
Sbjct:    5 DIRPQPGSTRRRRRLGRGIAAGQGASCGKGMRGQKARKGGGPRPGFEGGQTPLYRRLPKLKHFP--RYVRRPQYTLINLRAL--AKLPAGSEVSLESLMDLGIVTTNDG----PLKILGDGEVGVPLTIRAAAITPSARAKVEAAG 142          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_PROM0 (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplO PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.379e-26
Identity = 73/147 (49.66%), Postives = 91/147 (61.90%), Query Frame = -3
Query:  363 NNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 803
            N L    GS         GIAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            +  +NL+ +    F + D V+L++L KKGLI     + K PLKILG+G+L+ KL  +A AF+  AK+K+E AG
Sbjct:    6 NTLKSNSGSRKKKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFE---IINQKNFSIINLEKLN--DFKDNDTVNLDSLVKKGLI----FKPKFPLKILGNGKLNVKLKVQAHAFTKVAKQKIEDAG 143          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_ANAVT (50S ribosomal protein L15 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplO PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.801e-26
Identity = 72/153 (47.06%), Postives = 92/153 (60.13%), Query Frame = -3
Query:  345 NNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 803
            N++ PQ GS         GI+AGQG S G GMRGQKSRSG G R GFEGGQ PLYRRIPKL+G           Y  +N++ +  A      EV+LE+L+  G++       K PLK+LG+G+L   LN KA AF+  A+ K+EAAG +  VL
Sbjct:    4 NDVKPQKGSKKRRRRVGRGISAGQGASAGLGMRGQKSRSGSGTRPGFEGGQQPLYRRIPKLKGFP---VVNRKIYTTINVEKL--ADLPANTEVTLESLRASGILTAV----KGPLKVLGNGDLGVALNVKAAAFTGQARSKIEAAGGSCEVL 147          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_PROMP (50S ribosomal protein L15 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplO PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.073e-26
Identity = 75/154 (48.70%), Postives = 93/154 (60.39%), Query Frame = -3
Query:  345 NNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETL-KKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 803
            N L    GS         GIAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            +  VNL  +  + F E + V++++L KKK L  P     K PLKILG+GE+  KL  +A AF+  AKEK+EAAG +  ++
Sbjct:    6 NTLKSNTGSRKKKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFE---IINQKNFSIVNLSKL--SEFKESEVVNIDSLVKKKLLFKP-----KFPLKILGNGEVKVKLKVQAHAFTKVAKEKIEAAGGSCEII 149          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_PROMM (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplO PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.073e-26
Identity = 69/140 (49.29%), Postives = 87/140 (62.14%), Query Frame = -3
Query:  345 IAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKD---IEAAGFLE---GDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 746
            IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            +  VN K+   +  A   E   G  ++L+TL K G++       K PLK+LG+GEL  KL  +A AF+ +A+ K+EAAG T  +L
Sbjct:   26 IAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK-----------HFTTVNSKEFTVVNVAALNELKAGSTINLDTLVKNGVVT----SPKYPLKVLGNGELKVKLTIQAAAFTATARSKIEAAGGTCEIL 150          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_SYNPW (50S ribosomal protein L15 OS=Synechococcus sp. (strain WH7803) GN=rplO PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.013e-26
Identity = 70/131 (53.44%), Postives = 85/131 (64.89%), Query Frame = -3
Query:  357 IAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLE-GDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCT 746
            IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L       + ++ A   L+ G  VSL++L K G++       K PLKILG+GEL  KL  +A AF+ SA+ K+EAAG T
Sbjct:   25 IAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLVNPKQFTVVNVSALNDLKAGSTVSLDSLVKDGIVT----SPKHPLKILGNGELKTKLTVQAAAFTASARTKIEAAGGT 145          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_PROM9 (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplO1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.013e-26
Identity = 73/153 (47.71%), Postives = 94/153 (61.44%), Query Frame = -3
Query:  345 NNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 803
            N L    GS         GIAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            +  +NL  ++   F + D V+L++L KKGLI     + K PLKILG+G+++ KL  +A AF+  AK+K+E AG +  +L
Sbjct:    6 NTLKSNSGSRKKKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFE---IINQKNFSIINLDKLK--DFNDNDTVNLDSLVKKGLI----FKPKFPLKILGNGKVNVKLTVQAHAFTKVAKQKIEDAGGSCELL 149          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_PROMS (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain AS9601) GN=rplO PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.940e-26
Identity = 70/147 (47.62%), Postives = 91/147 (61.90%), Query Frame = -3
Query:  363 NNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 803
            N L    GS         GIAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            +  +NL+ +    F + D V++++L KKGLI     + K PLKILG+G+++ KL  +A +F+  AK+K+E AG
Sbjct:    6 NTLKSNSGSRKKKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFE---IINQKNFSIINLEKLN--DFKDNDTVNIDSLVKKGLI----FKPKFPLKILGNGKINVKLKVQAHSFTKVAKQKIEDAG 143          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_PROMA (50S ribosomal protein L15 OS=Prochlorococcus marinus GN=rplO PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.940e-26
Identity = 71/148 (47.97%), Postives = 89/148 (60.14%), Query Frame = -3
Query:  363 NNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFL-EGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 803
            ++L P  G+         GIAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L       L ++ +   L EG  V+L++L K G++       K PLK+LG+G L  KL  +A AF+ SAK K+E AG
Sbjct:    7 DSLKPNKGARKRKTRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLVNSKSFTLINVASLNSLKEGSTVNLDSLVKTGIVT----SPKYPLKVLGNGNLKVKLVVQAAAFTASAKTKIEGAG 144          
The following BLAST results are available for this feature:
BLAST of CV887120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_ANASP8.086e-2747.7150S ribosomal protein L15 OS=Anabaena sp. (strain ... [more]
RL15_SYNJA1.056e-2648.6350S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_PROM01.379e-2649.6650S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_ANAVT1.801e-2647.0650S ribosomal protein L15 OS=Anabaena variabilis (... [more]
RL15_PROMP3.073e-2648.7050S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_PROMM3.073e-2649.2950S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_SYNPW4.013e-2653.4450S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_PROM94.013e-2647.7150S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_PROMS8.940e-2647.6250S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_PROMA8.940e-2647.9750S ribosomal protein L15 OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_029C05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T7_C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887120 ID=CV887120; Name=CV887120; organism=Citrus sinensis; type=EST; length=805bp
TAATAACTGAGATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACAT
TGAGAGTTTAGCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAA
ATTCCAGAAATTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGA
AAACCTAAAACCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTT
AGTTACAGTGAGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGG
ATGCAGCTGCAGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCA
AGGTTCTTAGCTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGAC
AGTGAGGGTACAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGA
AGGCACGAGCCTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGA
ATCTTTAAAGGCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTT
CTTCTTCAAAGTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTG
CTTCTATGTCTTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGC
ATACCTCCGGCAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCAT
TTGACCACCTTCAAAACCCTTTCTAACGCCAGGACCAGACCTCGATTTCT
GACCTCTCATTCCAAACCCACAGCTGTTACCTTGCCCAGCTGCTATTCCT
CTCCCCTTTCTCTTCCCTCTCTTTCTCGAACCCGGTTGTGGGCCCAGGTT
ATTTA
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