CV887120

Overview
NameCV887120
Unique NameCV887120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_SYNJB (50S ribosomal protein L15 OS=Synechococcus sp. GN=rplO PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.168e-25
Identity = 70/152 (46.05%), Postives = 93/152 (61.18%), Query Frame = -3
Query:  345 NLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 800
            ++ PQ GS         G++AGQG SCG GMRGQK+R G   R GFEGGQ PLYRR+PKL+      +    +Y  VNL+ +  A    G EVSLE+L ++G++  +      PLKILGDGE+S  L  +A A + SAK K+EAAG  + +L
Sbjct:    5 DIRPQAGSTRRRRRLGRGVSAGQGASCGKGMRGQKARKGGSTRPGFEGGQTPLYRRLPKLKHFP--RYRRRLEYTLVNLRAL--ADLPAGSEVSLESLMERGIVTTNDG----PLKILGDGEVSVPLTIRAAAITASAKVKVEAAGGRVEIL 148          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_SYNR3 (50S ribosomal protein L15 OS=Synechococcus sp. (strain RCC307) GN=rplO PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.992e-25
Identity = 71/146 (48.63%), Postives = 88/146 (60.27%), Query Frame = -3
Query:  363 NLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 800
            +L PQ G+         GIAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+           ++  VN+   E A    G  V+ ++L + G++       K  LK+LGDGEL  KL   A AF+ SA+EK+EAAG
Sbjct:    7 SLKPQKGARRRKMRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFT---LVNPKRFTVVNVG--ELAELKAGTVVTRDSLTEAGILT----SPKHALKVLGDGELKVKLTVHAAAFTASAREKIEAAG 143          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_NOSP7 (50S ribosomal protein L15 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplO PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.601e-25
Identity = 71/153 (46.41%), Postives = 92/153 (60.13%), Query Frame = -3
Query:  345 NNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 803
            +++ PQ GS         GI+AGQG S G GMRGQKSRSG G R GFEGGQ PLYRR+PKL+G           Y  +N++ +  A      EV+L +LK  G++       K PLKILG+GELS  L  +A AF+ +A+ K+EAAG +  VL
Sbjct:    4 HDVKPQKGSKKRKKRVARGISAGQGASAGLGMRGQKSRSGSGTRPGFEGGQQPLYRRLPKLKGFP---IVNQKIYTTINVEKL--ASLPANTEVTLASLKAAGILTAV----KGPLKILGNGELSTPLKVQAAAFTGTARSKIEAAGGSCEVL 147          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_SYNS9 (50S ribosomal protein L15 OS=Synechococcus sp. (strain CC9902) GN=rplO PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.397e-25
Identity = 74/141 (52.48%), Postives = 92/141 (65.25%), Query Frame = -3
Query:  345 IAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGL--PKYVPV----NLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELS-KKLNFKARAFSTSAKEKLEAAGCTLTVL 746
            IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L  PK+  V     LKD++     +G  V+L++L K G++       K PLK+LG+GEL+ K L  +A AF+TSA+ K+EAAG T   L
Sbjct:   25 IAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLVNPKHFTVLNVSALKDLK-----DGATVNLDSLVKDGIVT----SPKHPLKMLGNGELTVKNLTVQASAFTTSARTKIEAAGGTCETL 150          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_SYNSC (50S ribosomal protein L15 OS=Synechococcus sp. (strain CC9605) GN=rplO PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.437e-25
Identity = 70/136 (51.47%), Postives = 89/136 (65.44%), Query Frame = -3
Query:  345 IAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFL-EGDEVSLETLKKKGLINPSGRERKLPLKILGDGEL-SKKLNFKARAFSTSAKEKLEAAGCTLTVL 746
            IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L       + ++ A   L +G  V+L++L K G++       K PLK+LG+GEL +KKL  +A AF++SA  K+EAAG T  +L
Sbjct:   25 IAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLVNPKHFTVLNVSALNDLKDGSTVNLDSLVKDGIVT----SPKHPLKMLGNGELTAKKLTVQAAAFTSSALTKIEAAGGTCDIL 150          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_PROM5 (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplO PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.884e-25
Identity = 74/154 (48.05%), Postives = 92/154 (59.74%), Query Frame = -3
Query:  345 NNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETL-KKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 803
            N L    GS         GIAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            Y  VNL  +  + F + + V++++L KKK L  P     K PLKILG+G +  KL  +A AF+  A+EK+E+AG +  VL
Sbjct:    6 NTLKSNLGSRKKKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFE---IINQKNYSIVNLSKL--SEFKDNEIVNIDSLVKKKLLFKP-----KFPLKILGNGVVKVKLKVQAHAFTKVAQEKIESAGGSCEVL 149          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_SYNPX (50S ribosomal protein L15 OS=Synechococcus sp. (strain WH8102) GN=rplO PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.291e-24
Identity = 68/130 (52.31%), Postives = 86/130 (66.15%), Query Frame = -3
Query:  363 IAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFL-EGDEVSLETLKKKGLINPSGRERKLPLKILGDGEL-SKKLNFKARAFSTSAKEKLEAAG 746
            IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L       + ++ A   L +G  V+L++L K G++       K PLKILG+G+L +KKL  +A AF+ SA+ K+EAAG
Sbjct:   26 IAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLVNPKHFTVLNVSALNSLKDGSTVNLDSLVKDGVVT----SPKHPLKILGNGDLTAKKLTVQAAAFTASARTKIEAAG 145          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_PROMT (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain NATL2A) GN=rplO PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.905e-24
Identity = 68/146 (46.58%), Postives = 87/146 (59.59%), Query Frame = -3
Query:  363 NLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 800
            +L    GS         GIAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            +  +N+  + A    +G  V+L+ L K+G++     + K PLKILG+G+L  KL  +A AF+ SAK K+E  G
Sbjct:    7 SLQSNKGSRRKKMRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFP---IVNQKNFTVLNVSRLNA--LKDGTIVNLDLLVKEGILT----KPKNPLKILGNGKLEVKLTVQAAAFTASAKNKIEEVG 143          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_PROM1 (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain NATL1A) GN=rplO PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.905e-24
Identity = 68/146 (46.58%), Postives = 87/146 (59.59%), Query Frame = -3
Query:  363 NLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 800
            +L    GS         GIAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            +  +N+  + A    +G  V+L+ L K+G++     + K PLKILG+G L  KL  +A AF+ SAK+K+E  G
Sbjct:    7 SLQSNKGSRRKKMRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFP---IVNQKNFTVLNVSRLNA--LKDGTIVNLDLLVKEGILT----KPKNPLKILGNGNLEVKLTVQAAAFTASAKKKIEEVG 143          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_CYAA5 (50S ribosomal protein L15 OS=Cyanothece sp. (strain ATCC 51142) GN=rplO PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.905e-24
Identity = 68/149 (45.64%), Postives = 90/149 (60.40%), Query Frame = -3
Query:  363 NNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLR--GIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 803
            + + PQ GS         GI+AGQG S GFGMRGQKSRSG G + GFEGGQMPLYRR+PKL+   +    H     Y  +N+  + +       EV+LE+L + GLI  +      PLK+LG+GEL+  L  +A  F+ SAK K+E+AG
Sbjct:    4 HEVNPQKGSTKRRRRIGRGISAGQGASGGFGMRGQKSRSGTGTKAGFEGGQMPLYRRVPKLKHFPLVNPSH-----YTIINVGKLNSLS--PNTEVTLESLMEVGLITSNDG----PLKVLGNGELTVPLTVRAPKFTASAKAKIESAG 141          
The following BLAST results are available for this feature:
BLAST of CV887120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_SYNJB1.168e-2546.0550S ribosomal protein L15 OS=Synechococcus sp. GN=... [more]
RL15_SYNR31.992e-2548.6350S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_NOSP72.601e-2546.4150S ribosomal protein L15 OS=Nostoc punctiforme (s... [more]
RL15_SYNS93.397e-2552.4850S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_SYNSC4.437e-2551.4750S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_PROM59.884e-2548.0550S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_SYNPX1.291e-2452.3150S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_PROMT4.905e-2446.5850S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_PROM14.905e-2446.5850S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_CYAA54.905e-2445.6450S ribosomal protein L15 OS=Cyanothece sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_029C05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T7_C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887120 ID=CV887120; Name=CV887120; organism=Citrus sinensis; type=EST; length=805bp
TAATAACTGAGATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACAT
TGAGAGTTTAGCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAA
ATTCCAGAAATTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGA
AAACCTAAAACCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTT
AGTTACAGTGAGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGG
ATGCAGCTGCAGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCA
AGGTTCTTAGCTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGAC
AGTGAGGGTACAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGA
AGGCACGAGCCTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGA
ATCTTTAAAGGCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTT
CTTCTTCAAAGTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTG
CTTCTATGTCTTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGC
ATACCTCCGGCAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCAT
TTGACCACCTTCAAAACCCTTTCTAACGCCAGGACCAGACCTCGATTTCT
GACCTCTCATTCCAAACCCACAGCTGTTACCTTGCCCAGCTGCTATTCCT
CTCCCCTTTCTCTTCCCTCTCTTTCTCGAACCCGGTTGTGGGCCCAGGTT
ATTTA
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