CV887119

Overview
NameCV887119
Unique NameCV887119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887119 vs. ExPASy Swiss-Prot
Match: RL15_PROMS (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain AS9601) GN=rplO PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.761e-26
Identity = 70/148 (47.30%), Postives = 91/148 (61.49%), Query Frame = 3
Query:  264 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 707
            LN L    GS          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            +  +NL+ +    F + D V++++L KKGLI     + K PLKILG+G+++ KL  +A +F+  AK+K+E AG
Sbjct:    5 LNTLKSNSGSRKKKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFE---IINQKNFSIINLEKLN--DFKDNDTVNIDSLVKKGLI----FKPKFPLKILGNGKINVKLKVQAHSFTKVAKQKIEDAG 143          
BLAST of CV887119 vs. ExPASy Swiss-Prot
Match: RL15_PROMA (50S ribosomal protein L15 OS=Prochlorococcus marinus GN=rplO PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.761e-26
Identity = 71/149 (47.65%), Postives = 89/149 (59.73%), Query Frame = 3
Query:  264 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFL-EGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 707
            L++L P  G+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L       L ++ +   L EG  V+L++L K G++       K PLK+LG+G L  KL  +A AF+ SAK K+E AG
Sbjct:    6 LDSLKPNKGARKRKTRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLVNSKSFTLINVASLNSLKEGSTVNLDSLVKTGIVT----SPKYPLKVLGNGNLKVKLVVQAAAFTASAKTKIEGAG 144          
BLAST of CV887119 vs. ExPASy Swiss-Prot
Match: RL15_SYNS9 (50S ribosomal protein L15 OS=Synechococcus sp. (strain CC9902) GN=rplO PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.606e-26
Identity = 78/162 (48.15%), Postives = 99/162 (61.11%), Query Frame = 3
Query:  261 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGL--PKYVPV----NLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELS-KKLNFKARAFSTSAKEKLEAAGCTLTVL 725
            RL++L    G+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L  PK+  V     LKD++     +G  V+L++L K G++       K PLK+LG+GEL+ K L  +A AF+TSA+ K+EAAG T   L
Sbjct:    4 RLDSLKANKGARRRKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLVNPKHFTVLNVSALKDLK-----DGATVNLDSLVKDGIVT----SPKHPLKMLGNGELTVKNLTVQASAFTTSARTKIEAAGGTCETL 150          
BLAST of CV887119 vs. ExPASy Swiss-Prot
Match: RL15_SYNSC (50S ribosomal protein L15 OS=Synechococcus sp. (strain CC9605) GN=rplO PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 74/157 (47.13%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  261 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFL-EGDEVSLETLKKKGLINPSGRERKLPLKILGDGEL-SKKLNFKARAFSTSAKEKLEAAGCTLTVL 725
            RL++L    G+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L       + ++ A   L +G  V+L++L K G++       K PLK+LG+GEL +KKL  +A AF++SA  K+EAAG T  +L
Sbjct:    4 RLDSLKSNKGARRRKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLVNPKHFTVLNVSALNDLKDGSTVNLDSLVKDGIVT----SPKHPLKMLGNGELTAKKLTVQAAAFTSSALTKIEAAGGTCDIL 150          
BLAST of CV887119 vs. ExPASy Swiss-Prot
Match: RL15_SYNR3 (50S ribosomal protein L15 OS=Synechococcus sp. (strain RCC307) GN=rplO PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.150e-26
Identity = 71/148 (47.97%), Postives = 88/148 (59.46%), Query Frame = 3
Query:  264 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 707
            L +L PQ G+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+           ++  VN+   E A    G  V+ ++L + G++       K  LK+LGDGEL  KL   A AF+ SA+EK+EAAG
Sbjct:    5 LQSLKPQKGARRRKMRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFT---LVNPKRFTVVNVG--ELAELKAGTVVTRDSLTEAGILT----SPKHALKVLGDGELKVKLTVHAAAFTASAREKIEAAG 143          
BLAST of CV887119 vs. ExPASy Swiss-Prot
Match: RL15_SYNPX (50S ribosomal protein L15 OS=Synechococcus sp. (strain WH8102) GN=rplO PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.789e-25
Identity = 72/151 (47.68%), Postives = 92/151 (60.93%), Query Frame = 3
Query:  261 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFL-EGDEVSLETLKKKGLINPSGRERKLPLKILGDGEL-SKKLNFKARAFSTSAKEKLEAAG 707
            RL +L    G+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L       + ++ A   L +G  V+L++L K G++       K PLKILG+G+L +KKL  +A AF+ SA+ K+EAAG
Sbjct:    5 RLESLKANKGARRRKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLVNPKHFTVLNVSALNSLKDGSTVNLDSLVKDGVVT----SPKHPLKILGNGDLTAKKLTVQAAAFTASARTKIEAAG 145          
BLAST of CV887119 vs. ExPASy Swiss-Prot
Match: RL15_PROM5 (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplO PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.052e-25
Identity = 74/155 (47.74%), Postives = 92/155 (59.35%), Query Frame = 3
Query:  264 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETL-KKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 725
            LN L    GS          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            Y  VNL  +  + F + + V++++L KKK L  P     K PLKILG+G +  KL  +A AF+  A+EK+E+AG +  VL
Sbjct:    5 LNTLKSNLGSRKKKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFE---IINQKNYSIVNLSKL--SEFKDNEIVNIDSLVKKKLLFKP-----KFPLKILGNGVVKVKLKVQAHAFTKVAQEKIESAGGSCEVL 149          
BLAST of CV887119 vs. ExPASy Swiss-Prot
Match: RL15_CYAA5 (50S ribosomal protein L15 OS=Cyanothece sp. (strain ATCC 51142) GN=rplO PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.800e-25
Identity = 68/151 (45.03%), Postives = 91/151 (60.26%), Query Frame = 3
Query:  261 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLR--GIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 707
            R++ + PQ GS          I+AGQG S GFGMRGQKSRSG G + GFEGGQMPLYRR+PKL+   +    H     Y  +N+  + +       EV+LE+L + GLI  +      PLK+LG+GEL+  L  +A  F+ SAK K+E+AG
Sbjct:    2 RIHEVNPQKGSTKRRRRIGRGISAGQGASGGFGMRGQKSRSGTGTKAGFEGGQMPLYRRVPKLKHFPLVNPSH-----YTIINVGKLNSLS--PNTEVTLESLMEVGLITSNDG----PLKVLGNGELTVPLTVRAPKFTASAKAKIESAG 141          
BLAST of CV887119 vs. ExPASy Swiss-Prot
Match: RL15_PROMT (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain NATL2A) GN=rplO PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.881e-25
Identity = 68/149 (45.64%), Postives = 88/149 (59.06%), Query Frame = 3
Query:  261 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 707
            +L +L    GS          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            +  +N+  + A    +G  V+L+ L K+G++     + K PLKILG+G+L  KL  +A AF+ SAK K+E  G
Sbjct:    4 KLESLQSNKGSRRKKMRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFP---IVNQKNFTVLNVSRLNA--LKDGTIVNLDLLVKEGILT----KPKNPLKILGNGKLEVKLTVQAAAFTASAKNKIEEVG 143          
BLAST of CV887119 vs. ExPASy Swiss-Prot
Match: RL15_PROM1 (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain NATL1A) GN=rplO PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.881e-25
Identity = 68/149 (45.64%), Postives = 88/149 (59.06%), Query Frame = 3
Query:  261 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 707
            +L +L    GS          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            +  +N+  + A    +G  V+L+ L K+G++     + K PLKILG+G L  KL  +A AF+ SAK+K+E  G
Sbjct:    4 KLESLQSNKGSRRKKMRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFP---IVNQKNFTVLNVSRLNA--LKDGTIVNLDLLVKEGILT----KPKNPLKILGNGNLEVKLTVQAAAFTASAKKKIEEVG 143          
The following BLAST results are available for this feature:
BLAST of CV887119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_PROMS2.761e-2647.3050S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_PROMA2.761e-2647.6550S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_SYNS93.606e-2648.1550S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_SYNSC4.709e-2647.1350S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_SYNR36.150e-2647.9750S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_SYNPX1.789e-2547.6850S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_PROM53.052e-2547.7450S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_CYAA56.800e-2545.0350S ribosomal protein L15 OS=Cyanothece sp. (strai... [more]
RL15_PROMT8.881e-2545.6450S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_PROM18.881e-2545.6450S ribosomal protein L15 OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_029C05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T3_C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887119 ID=CV887119; Name=CV887119; organism=Citrus sinensis; type=EST; length=753bp
CTGAAGCATAAAATTTCATCATCGTAATCATCTCCATCATGGCATCTCTT
CTCTCAGTCACTGCAAATTCACTAAGCTTTCCATCAACTCCATTCAAGGG
CAATGTCAAAACCCTAATGCCAAAACCCCCATCAAGCCTTTGCGTCCCTC
TCAAAGTCCAACAAAGAAATAAACCACCCCAGCTCACTGTCTTAAACCAA
GCTGCTTCGGCTTCTGCTTCAGCAACTGTTGGTTCGGGTCCCGTTACGAA
TGTACGGTTCCGGTTAAATAACCTGGGCCCACAACCGGGTTCGAGAAAGA
GAGGGAAGAGAAAGGGGAGAGGAATAGCAGCTGGGCAAGGTAACAGCTGT
GGGTTTGGAATGAGAGGTCAGAAATCGAGGTCTGGTCCTGGCGTTAGAAA
GGGTTTTGAAGGTGGTCAAATGCCTCTTTATCGTCGAATTCCTAAGCTCC
GTGGGATTGCCGGAGGTATGCATGCTGGGTTACCTAAGTATGTCCCTGTT
AACTTGAAAGACATAGAAGCAGCTGGTTTTCTAGAGGGGGATGAAGTCTC
ACTAGAGACTTTGAAGAAGAAGGGCTTGATCAATCCCTCAGGAAGAGAAA
GGAAACTGCCTTTAAAGATTCTTGGTGATGGAGAATTAAGCAAGAAGCTG
AACTTCAAGGCTCGTGCCTTCTCTACATCAGCAAAGGAGAAGCTTGAAGC
TGCAGGCTGTACCCTCACTGTCTTACCTGGCCGAAAGAAGTGGGTGAAAC
CAT
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