CV887115

Overview
NameCV887115
Unique NameCV887115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887115 vs. ExPASy Swiss-Prot
Match: ACBP_YEAST (Acyl-CoA-binding protein OS=Saccharomyces cerevisiae GN=ACB1 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.252e-15
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = -3
Query:  196 FEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQL 423
            FEE A+    LP   + +  L LY LYKQATVG  +  +PG+FNM+DR KW+AW+ ++GKS+E+A  +YI  V QL
Sbjct:    6 FEEKAKAVNELPTKPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWENLKGKSQEDAEKEYIALVDQL 81          
BLAST of CV887115 vs. ExPASy Swiss-Prot
Match: ACBP_SCHPO (Putative acyl-CoA-binding protein OS=Schizosaccharomyces pombe GN=SPBC1539.06 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.758e-15
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = -3
Query:  178 LQEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEEAGV 435
            +   FE+ A   K L E+  ++  L LY L+KQATVG  NT +PG+ +++ + KW+AW+ ++GKSKE+A S+YI+ V +L+ + G+
Sbjct:    1 MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGDNNTEKPGLLDLKGKFKWNAWEELKGKSKEDAASEYISFVDELKTKYGM 86          
BLAST of CV887115 vs. ExPASy Swiss-Prot
Match: ACBD7_HUMAN (Acyl-CoA-binding domain-containing protein 7 OS=Homo sapiens GN=ACBD7 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.084e-14
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = -3
Query:  178 MGLQEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEEAGV 441
            M LQ +F+  AE  + L     +     LYGLYKQA VG +N   PGM +++ +AKW+AW   +G S E+A S YI+K K+L E+ G+
Sbjct:    1 MALQADFDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNLKKGLSTEDATSAYISKAKELIEKYGI 88          
BLAST of CV887115 vs. ExPASy Swiss-Prot
Match: ACBD7_BOVIN (Acyl-CoA-binding domain-containing protein 7 OS=Bos taurus GN=ACBD7 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.260e-14
Identity = 34/88 (38.64%), Postives = 57/88 (64.77%), Query Frame = -3
Query:  178 MGLQEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEEAGV 441
            M LQ +F++ A+  + L     +E    LYGLYKQ+ +G ++   P + +++ +AKW+AW   +G SKE+AM+ YI+K K+L E+ G+
Sbjct:    1 MSLQADFDKAAKDVRKLKTRPDDEELKELYGLYKQSVIGDIDIECPALLDLKGKAKWEAWNLQKGLSKEDAMNAYISKAKELIEKYGI 88          
BLAST of CV887115 vs. ExPASy Swiss-Prot
Match: PECI_HUMAN (Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Homo sapiens GN=PECI PE=1 SV=4)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = -3
Query:  196 QEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQL 432
            Q++FE    + K L +   NE KL LY LYKQAT GP N  +PG+F++ ++AKWDAW A+    KE A  +Y+  V  L
Sbjct:   40 QKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSSL 118          
BLAST of CV887115 vs. ExPASy Swiss-Prot
Match: PECI_MOUSE (Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Mus musculus GN=Peci PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.611e-13
Identity = 36/83 (43.37%), Postives = 48/83 (57.83%), Query Frame = -3
Query:  184 QEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEEA 432
            Q++FE    + K L +   NE KL LY LYKQAT GP N  +PGM +  ++AKWDAW A+    KE A  +Y+  V  L   +
Sbjct:   38 QQDFENALNQVKLLKKDPGNEVKLRLYALYKQATEGPCNMPKPGMLDFVNKAKWDAWNALGSLPKETARQNYVDLVSSLSSSS 120          
BLAST of CV887115 vs. ExPASy Swiss-Prot
Match: PECI_RAT (Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Rattus norvegicus GN=Peci PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = -3
Query:  172 QEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEEAGVSA 432
            Q++FE    + K L +   NE KL LY LYKQAT GP    +PG+F+  ++AKWDAW A+    KE A  +Y+  V  L   +  S+
Sbjct:   38 QQDFENAMNQVKLLKKDPGNEVKLRLYALYKQATEGPCTMPKPGVFDFVNKAKWDAWNALGSLPKETARQNYVDLVSSLSSSSEASS 124          
BLAST of CV887115 vs. ExPASy Swiss-Prot
Match: ACBP_DROME (Acyl-CoA-binding protein homolog OS=Drosophila melanogaster GN=Dbi PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 34/80 (42.50%), Postives = 54/80 (67.50%), Query Frame = -3
Query:  196 LQEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQL 435
            + E+F   AEK K+L +  +++  L LY L+KQA+VG  +T +PG+ +++ +AKW+AW   +GKS E A  +YIT V+ L
Sbjct:    2 VSEQFNAAAEKVKSLTKRPSDDEFLQLYALFKQASVGDNDTAKPGLLDLKGKAKWEAWNKQKGKSSEAAQQEYITFVEGL 81          
BLAST of CV887115 vs. ExPASy Swiss-Prot
Match: ACBD7_MOUSE (Acyl-CoA-binding domain-containing protein 7 OS=Mus musculus GN=Acbd7 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.816e-13
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  178 MGLQEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEEAGV 441
            M LQ +F++ A+  + L     +E    LYGLYKQ+ +G +N   P M +++ +AK +AW   +G SKE+AM  YI+K ++L E+ G+
Sbjct:    1 MSLQADFDQAAQDVRKLKSRPEDEELKELYGLYKQSVIGDINIACPAMLDLKGKAKCEAWNLQKGLSKEDAMCAYISKARELIEKYGI 88          
BLAST of CV887115 vs. ExPASy Swiss-Prot
Match: ACBP1_CAEEL (Acyl-CoA-binding protein homolog 1 OS=Caenorhabditis elegans GN=acbp-1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13
Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = -3
Query:  181 FEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEEAG 423
            F++ A   KTL  S +N+  L LY L+KQ TVG   T++PGMF+++ +AKW AW   +G +K++A   Y+  V++L  + G
Sbjct:    5 FDDAAATVKTLKTSPSNDELLKLYALFKQGTVGDNTTDKPGMFDLKGKAKWSAWDEKKGLAKDDAQKAYVALVEELIAKYG 85          
The following BLAST results are available for this feature:
BLAST of CV887115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
ACBP_YEAST1.252e-1550.00Acyl-CoA-binding protein OS=Saccharomyces cerevisi... [more]
ACBP_SCHPO4.758e-1541.86Putative acyl-CoA-binding protein OS=Schizosacchar... [more]
ACBD7_HUMAN3.084e-1443.18Acyl-CoA-binding domain-containing protein 7 OS=Ho... [more]
ACBD7_BOVIN5.260e-1438.64Acyl-CoA-binding domain-containing protein 7 OS=Bo... [more]
PECI_HUMAN1.172e-1345.57Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Homo ... [more]
PECI_MOUSE2.611e-1343.37Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Mus m... [more]
PECI_RAT3.410e-1341.38Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Rattu... [more]
ACBP_DROME3.410e-1342.50Acyl-CoA-binding protein homolog OS=Drosophila mel... [more]
ACBD7_MOUSE5.816e-1338.64Acyl-CoA-binding domain-containing protein 7 OS=Mu... [more]
ACBP1_CAEEL7.596e-1340.74Acyl-CoA-binding protein homolog 1 OS=Caenorhabdit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_029C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887115 ID=CV887115; Name=CV887115; organism=Citrus sinensis; type=EST; length=500bp
AATCATTTCAATGGACTTTAACCAAAGTACATATCATACATAATTTAAAC
AGAGACATAATTCAGATGTAACATCAATAGAACCAGTTTGCAAACAGCTT
AAACCTTTTTCAACTTATTTTGACTTCTCCGAATCATGAGATTTGGAAGA
TAAGCATACAGCGGAAGGTCAGGCAGAAACACCAGCTTCCTCCTGCAACT
GCTTTACCTTGGTAATGTAGTCACTCATTGCTTCCTCCTTAGATTTCCCT
TCGACAGCCTTCCATGCATCCCACTTAGCTCTGTCCCTCATGTTAAACAT
TCCAGGTCTGTTTGTGTTTACTGGTCCAACAGTGGCTTGCTTGTAGAGAC
CATAAAGGATAAGCTTGTTTTCGTTTGTTGTCGACTCTGGCAGGGTCTTT
GCTTTCTCAGCATGCTCCTCAAATTCCTCCTGCAAACCCATTTCCCCCTT
TCTTTTGTTTTTCTCTGAGATTTGAGAATTGAGATGTGATGTGCTTCGAA
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